Wall clock time and date at job start Mon Mar 30 2020 07:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52996 * 109.46975 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47140 * 55.00356 * 4 3 2 6 6 C 1.53002 * 109.47351 * 294.99856 * 4 3 2 7 7 C 1.53003 * 109.47304 * 174.99953 * 4 3 2 8 8 C 1.52993 * 109.47571 * 184.99964 * 7 4 3 9 9 C 1.53003 * 109.47571 * 180.02562 * 8 7 4 10 10 N 1.46895 * 109.47389 * 180.02562 * 9 8 7 11 11 C 1.46853 * 110.99822 * 294.21105 * 10 9 8 12 12 C 1.53042 * 109.52142 * 174.16208 * 11 10 9 13 13 C 1.53114 * 109.27770 * 59.17770 * 12 11 10 14 14 C 1.50709 * 109.57237 * 182.40923 * 13 12 11 15 15 H 1.07994 * 120.00076 * 119.71738 * 14 13 12 16 16 C 1.37878 * 119.99507 * 299.71364 * 14 13 12 17 17 N 1.31515 * 120.00387 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99462 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47174 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47072 * 120.00354 * 18 16 14 21 21 H 1.48502 * 109.46850 * 239.99932 * 18 16 14 22 22 C 1.53114 * 109.16180 * 302.34290 * 13 12 11 23 23 C 1.46839 * 111.00078 * 170.00230 * 10 9 8 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09002 * 109.47069 * 179.97438 * 6 4 3 32 32 H 1.08998 * 109.47407 * 300.00337 * 6 4 3 33 33 H 1.09000 * 109.46682 * 60.00160 * 6 4 3 34 34 H 1.08998 * 109.47292 * 305.00593 * 7 4 3 35 35 H 1.09011 * 109.46801 * 64.99982 * 7 4 3 36 36 H 1.08998 * 109.47326 * 300.00608 * 8 7 4 37 37 H 1.09011 * 109.47043 * 60.00166 * 8 7 4 38 38 H 1.08998 * 109.46857 * 300.00316 * 9 8 7 39 39 H 1.09002 * 109.46535 * 60.00021 * 9 8 7 40 40 H 1.08995 * 109.45988 * 294.17674 * 11 10 9 41 41 H 1.09004 * 109.46380 * 54.14561 * 11 10 9 42 42 H 1.09001 * 109.49908 * 299.23794 * 12 11 10 43 43 H 1.08998 * 109.50090 * 179.12380 * 12 11 10 44 44 H 1.09003 * 109.52626 * 62.25163 * 13 12 11 45 45 H 0.96998 * 119.99418 * 180.02562 * 17 16 14 46 46 H 1.08997 * 109.50624 * 297.71394 * 22 13 12 47 47 H 1.09004 * 109.50423 * 177.59799 * 22 13 12 48 48 H 1.08997 * 109.46502 * 305.85392 * 23 10 9 49 49 H 1.09003 * 109.46405 * 65.83334 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8330 1.3083 7 6 4.0802 2.8794 -0.1251 8 6 5.6050 2.8703 -0.2498 9 6 6.1152 4.3073 -0.3749 10 7 7.5792 4.2984 -0.4953 11 6 8.2057 3.8058 0.7381 12 6 9.7156 3.6727 0.5270 13 6 10.2953 5.0382 0.1481 14 6 11.7723 4.9031 -0.1192 15 1 12.1708 5.1571 -1.0903 16 6 12.6148 4.4552 0.8761 17 7 12.1294 4.1455 2.0586 18 14 14.4457 4.2884 0.5451 19 1 14.7351 4.6966 -0.8531 20 1 15.1995 5.1598 1.4818 21 1 14.8578 2.8755 0.7432 22 6 9.5922 5.5507 -1.1119 23 6 8.0858 5.6294 -0.8532 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 5.1695 0.8326 1.3085 32 1 3.7159 1.4225 2.1499 33 1 3.7161 -0.1907 1.3978 34 1 3.6459 3.3430 -1.0109 35 1 3.7914 3.4462 0.7602 36 1 6.0393 2.4067 0.6359 37 1 5.8937 2.3035 -1.1351 38 1 5.6809 4.7712 -1.2605 39 1 5.8265 4.8736 0.5105 40 1 8.0129 4.5082 1.5489 41 1 7.7875 2.8322 0.9941 42 1 9.9094 2.9599 -0.2746 43 1 10.1822 3.3218 1.4474 44 1 10.1359 5.7413 0.9657 45 1 12.7223 3.8308 2.7588 46 1 9.7841 4.8675 -1.9392 47 1 9.9707 6.5418 -1.3623 48 1 7.5807 5.9804 -1.7530 49 1 7.8938 6.3233 -0.0348 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599356745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:17 Heat of formation + Delta-G solvation = -49.476873 kcal Electronic energy + Delta-G solvation = -20792.259199 eV Core-core repulsion = 17945.076231 eV Total energy + Delta-G solvation = -2847.182969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.50406 -37.51611 -34.66717 -33.30261 -31.63863 -29.78876 -29.72431 -26.90342 -26.33690 -24.58960 -22.58432 -22.01248 -21.28314 -20.25323 -19.98933 -18.52358 -16.34672 -15.77478 -15.33866 -15.13815 -14.61809 -14.44448 -14.17972 -13.75549 -13.60488 -13.27314 -12.80256 -12.66869 -12.53358 -12.37498 -12.04660 -11.97598 -11.85055 -11.61415 -11.27873 -11.19565 -11.15215 -10.93915 -10.70159 -10.65828 -10.59428 -10.50243 -10.25780 -10.15607 -10.07877 -9.91630 -9.35685 -8.90491 -8.63130 -8.25590 -7.66423 -5.93578 -3.98622 3.32581 3.40539 3.44897 4.34686 4.48318 4.66366 4.68045 4.78185 4.94292 5.08556 5.17556 5.27742 5.36592 5.42100 5.48274 5.54312 5.56858 5.65860 5.69529 5.76291 5.79860 5.83845 5.85620 5.91924 5.96949 6.00048 6.04257 6.09731 6.16426 6.23854 6.24754 6.31301 6.38467 6.44804 6.50561 6.69078 6.71510 6.91521 7.14174 7.23170 7.50394 7.68899 7.78705 7.89823 8.10252 8.21218 8.52972 9.05424 9.65540 11.12643 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036676 B = 0.002970 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.263939 B = 9424.194004 C = 9927.639728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.092 4.092 5 H 0.069 0.931 6 C -0.151 4.151 7 C -0.112 4.112 8 C -0.117 4.117 9 C 0.055 3.945 10 N -0.537 5.537 11 C 0.056 3.944 12 C -0.104 4.104 13 C 0.047 3.953 14 C -0.508 4.508 15 H 0.055 0.945 16 C 0.059 3.941 17 N -0.892 5.892 18 Si 0.889 3.111 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.106 4.106 23 C 0.061 3.939 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.023 0.977 40 H 0.020 0.980 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.091 0.909 44 H 0.019 0.981 45 H 0.258 0.742 46 H 0.056 0.944 47 H 0.048 0.952 48 H 0.055 0.945 49 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.983 -5.266 -2.894 20.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.110 4.110 5 H 0.088 0.912 6 C -0.208 4.208 7 C -0.150 4.150 8 C -0.154 4.154 9 C -0.073 4.073 10 N -0.262 5.262 11 C -0.071 4.071 12 C -0.142 4.142 13 C 0.028 3.972 14 C -0.546 4.546 15 H 0.073 0.927 16 C -0.141 4.141 17 N -0.532 5.532 18 Si 0.717 3.283 19 H -0.198 1.198 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.144 4.144 23 C -0.067 4.067 24 H 0.071 0.929 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.082 0.918 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.042 0.958 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.061 0.939 43 H 0.109 0.891 44 H 0.038 0.962 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.067 0.933 48 H 0.074 0.926 49 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -19.788 -5.641 -3.098 20.808 hybrid contribution 0.764 0.476 0.597 1.080 sum -19.023 -5.165 -2.501 19.870 Atomic orbital electron populations 1.21784 0.96203 1.01373 1.01662 1.21597 0.95496 0.97280 1.02101 1.21668 0.95235 0.96506 1.01807 1.21155 0.94701 0.96636 0.98523 0.91230 1.21937 1.01574 1.00299 0.96985 1.21608 0.95904 0.96004 1.01532 1.21651 0.94107 0.96941 1.02736 1.22071 0.89226 0.96492 0.99532 1.61999 1.03577 1.25367 1.35232 1.22303 0.98165 0.97858 0.88779 1.21654 0.89550 1.00159 1.02871 1.18691 0.93871 0.92881 0.91720 1.21262 0.92144 1.43329 0.97911 0.92712 1.24979 0.98487 0.95500 0.95155 1.69894 1.34624 1.45619 1.03049 0.86581 0.85825 0.77614 0.78242 1.19841 1.21174 1.21096 1.21677 0.91697 0.99987 1.01058 1.22099 0.97772 0.88561 0.98275 0.92886 0.92983 0.92884 0.91799 0.92145 0.92180 0.92169 0.92150 0.92926 0.92855 0.92241 0.92329 0.91533 0.91377 0.91788 0.95845 0.96223 0.92459 0.93891 0.89062 0.96244 0.93208 0.92522 0.93286 0.92605 0.96013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.97 5.69 -26.73 -0.15 -1.12 16 3 C -0.11 -0.94 4.68 -26.73 -0.13 -1.07 16 4 C -0.09 -0.86 2.39 -90.62 -0.22 -1.08 16 5 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 6 C -0.15 -1.45 8.70 37.16 0.32 -1.13 16 7 C -0.11 -1.17 4.68 -26.73 -0.13 -1.30 16 8 C -0.12 -1.51 4.90 -26.73 -0.13 -1.64 16 9 C 0.06 0.82 4.96 -3.82 -0.02 0.80 16 10 N -0.54 -9.90 4.66 -234.67 -1.09 -10.99 16 11 C 0.06 1.14 5.29 -3.83 -0.02 1.12 16 12 C -0.10 -2.52 5.12 -26.65 -0.14 -2.65 16 13 C 0.05 1.20 2.16 -91.65 -0.20 1.00 16 14 C -0.51 -14.21 8.57 -34.44 -0.29 -14.51 16 15 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 16 C 0.06 1.67 5.31 -17.82 -0.09 1.57 16 17 N -0.89 -25.77 11.37 55.43 0.63 -25.14 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.11 -2.30 5.32 -26.65 -0.14 -2.45 16 23 C 0.06 1.14 5.46 -3.84 -0.02 1.12 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.06 0.49 6.56 -51.93 -0.34 0.15 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.64 6.57 -51.93 -0.34 0.30 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.46 6.56 -51.93 -0.34 0.12 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.07 0.92 4.85 -51.93 -0.25 0.66 16 37 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.06 0.88 7.99 -51.93 -0.41 0.47 16 39 H 0.02 0.35 8.12 -51.93 -0.42 -0.07 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.07 6.21 -51.93 -0.32 0.74 16 42 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 2.44 6.17 -51.93 -0.32 2.12 16 44 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 47 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.92 8.01 -51.93 -0.42 0.51 16 49 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 365.56 15.07 5.51 5.51 Total: -1.00 -28.16 365.56 -10.86 -39.02 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -9.90 Total: -2.94 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: -0.98 Total: -22.00 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.46 Total: -36.13 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.16 -10.86 -39.02 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599356745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.457 kcal (2) G-P(sol) polarization free energy of solvation -28.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds