Wall clock time and date at job start Mon Mar 30 2020 07:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 C 1.52996 * 109.46975 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47140 * 55.00356 * 4 3 2 6 6 C 1.53002 * 109.47351 * 294.99856 * 4 3 2 7 7 C 1.53003 * 109.47304 * 174.99953 * 4 3 2 8 8 C 1.52993 * 109.47571 * 184.99964 * 7 4 3 9 9 C 1.53003 * 109.47571 * 180.02562 * 8 7 4 10 10 N 1.46895 * 109.47389 * 180.02562 * 9 8 7 11 11 C 1.46853 * 110.99822 * 294.21105 * 10 9 8 12 12 C 1.53042 * 109.52142 * 174.16208 * 11 10 9 13 13 C 1.53114 * 109.27770 * 59.17770 * 12 11 10 14 14 C 1.50709 * 109.57237 * 182.40923 * 13 12 11 15 15 H 1.07994 * 120.00076 * 119.71738 * 14 13 12 16 16 C 1.37878 * 119.99507 * 299.71364 * 14 13 12 17 17 N 1.31515 * 120.00387 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99462 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47174 * 359.97438 * 18 16 14 20 20 H 1.48491 * 109.47072 * 120.00354 * 18 16 14 21 21 H 1.48502 * 109.46850 * 239.99932 * 18 16 14 22 22 C 1.53114 * 109.16180 * 302.34290 * 13 12 11 23 23 C 1.46839 * 111.00078 * 170.00230 * 10 9 8 24 24 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 25 25 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 27 27 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 28 28 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 29 29 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 30 30 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 31 31 H 1.09002 * 109.47069 * 179.97438 * 6 4 3 32 32 H 1.08998 * 109.47407 * 300.00337 * 6 4 3 33 33 H 1.09000 * 109.46682 * 60.00160 * 6 4 3 34 34 H 1.08998 * 109.47292 * 305.00593 * 7 4 3 35 35 H 1.09011 * 109.46801 * 64.99982 * 7 4 3 36 36 H 1.08998 * 109.47326 * 300.00608 * 8 7 4 37 37 H 1.09011 * 109.47043 * 60.00166 * 8 7 4 38 38 H 1.08998 * 109.46857 * 300.00316 * 9 8 7 39 39 H 1.09002 * 109.46535 * 60.00021 * 9 8 7 40 40 H 1.08995 * 109.45988 * 294.17674 * 11 10 9 41 41 H 1.09004 * 109.46380 * 54.14561 * 11 10 9 42 42 H 1.09001 * 109.49908 * 299.23794 * 12 11 10 43 43 H 1.08998 * 109.50090 * 179.12380 * 12 11 10 44 44 H 1.09003 * 109.52626 * 62.25163 * 13 12 11 45 45 H 0.96998 * 119.99418 * 180.02562 * 17 16 14 46 46 H 1.08997 * 109.50624 * 297.71394 * 22 13 12 47 47 H 1.09004 * 109.50423 * 177.59799 * 22 13 12 48 48 H 1.08997 * 109.46502 * 305.85392 * 23 10 9 49 49 H 1.09003 * 109.46405 * 65.83334 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9337 0.8529 -0.8409 6 6 4.0795 0.8330 1.3083 7 6 4.0802 2.8794 -0.1251 8 6 5.6050 2.8703 -0.2498 9 6 6.1152 4.3073 -0.3749 10 7 7.5792 4.2984 -0.4953 11 6 8.2057 3.8058 0.7381 12 6 9.7156 3.6727 0.5270 13 6 10.2953 5.0382 0.1481 14 6 11.7723 4.9031 -0.1192 15 1 12.1708 5.1571 -1.0903 16 6 12.6148 4.4552 0.8761 17 7 12.1294 4.1455 2.0586 18 14 14.4457 4.2884 0.5451 19 1 14.7351 4.6966 -0.8531 20 1 15.1995 5.1598 1.4818 21 1 14.8578 2.8755 0.7432 22 6 9.5922 5.5507 -1.1119 23 6 8.0858 5.6294 -0.8532 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 5.1695 0.8326 1.3085 32 1 3.7159 1.4225 2.1499 33 1 3.7161 -0.1907 1.3978 34 1 3.6459 3.3430 -1.0109 35 1 3.7914 3.4462 0.7602 36 1 6.0393 2.4067 0.6359 37 1 5.8937 2.3035 -1.1351 38 1 5.6809 4.7712 -1.2605 39 1 5.8265 4.8736 0.5105 40 1 8.0129 4.5082 1.5489 41 1 7.7875 2.8322 0.9941 42 1 9.9094 2.9599 -0.2746 43 1 10.1822 3.3218 1.4474 44 1 10.1359 5.7413 0.9657 45 1 12.7223 3.8308 2.7588 46 1 9.7841 4.8675 -1.9392 47 1 9.9707 6.5418 -1.3623 48 1 7.5807 5.9804 -1.7530 49 1 7.8938 6.3233 -0.0348 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599356745.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:16 Heat of formation + Delta-G solvation = -62.733253 kcal Electronic energy + Delta-G solvation = -20792.834039 eV Core-core repulsion = 17945.076231 eV Total energy + Delta-G solvation = -2847.757809 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.96876 -38.43910 -36.12814 -34.58535 -33.18642 -31.47985 -31.01701 -27.96334 -27.56478 -25.98086 -24.07502 -23.56651 -22.39034 -21.37107 -20.76741 -20.33100 -18.44909 -16.91425 -16.54675 -16.32604 -16.13096 -15.71286 -15.18281 -14.90702 -14.81642 -14.63984 -14.25054 -14.20268 -14.07719 -13.35193 -13.20772 -13.02871 -12.91150 -12.84329 -12.64116 -12.53427 -12.42752 -12.26601 -12.04760 -11.98214 -11.90694 -11.83136 -11.50295 -11.37310 -11.28071 -11.14751 -11.01772 -10.77886 -10.60109 -10.37179 -9.15967 -8.08209 -6.21680 1.39596 1.41269 1.52985 2.43574 3.05279 3.18545 3.79304 3.96518 4.04696 4.12893 4.21151 4.26816 4.34096 4.36949 4.46784 4.50399 4.53287 4.62519 4.69787 4.74296 4.76212 4.84458 4.86506 4.89116 4.94281 4.96612 5.03029 5.07483 5.07696 5.11521 5.18275 5.23987 5.30306 5.33019 5.33850 5.38515 5.39138 5.50141 5.57071 5.61525 5.63130 5.64101 6.00316 6.03896 6.31863 6.38563 6.41041 6.90173 7.46048 8.96654 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036676 B = 0.002970 C = 0.002820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.263939 B = 9424.194004 C = 9927.639728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C -0.110 4.110 4 C -0.089 4.089 5 H 0.066 0.934 6 C -0.150 4.150 7 C -0.105 4.105 8 C -0.110 4.110 9 C 0.056 3.944 10 N -0.544 5.544 11 C 0.070 3.930 12 C -0.095 4.095 13 C 0.043 3.957 14 C -0.532 4.532 15 H 0.051 0.949 16 C 0.010 3.990 17 N -0.919 5.919 18 Si 0.955 3.045 19 H -0.268 1.268 20 H -0.280 1.280 21 H -0.280 1.280 22 C -0.100 4.100 23 C 0.065 3.935 24 H 0.055 0.945 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.025 0.975 40 H 0.009 0.991 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.060 0.940 44 H -0.014 1.014 45 H 0.260 0.740 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.088 0.912 49 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.335 -5.378 -3.901 22.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.148 4.148 4 C -0.108 4.108 5 H 0.085 0.915 6 C -0.208 4.208 7 C -0.143 4.143 8 C -0.148 4.148 9 C -0.072 4.072 10 N -0.269 5.269 11 C -0.058 4.058 12 C -0.134 4.134 13 C 0.024 3.976 14 C -0.570 4.570 15 H 0.069 0.931 16 C -0.188 4.188 17 N -0.558 5.558 18 Si 0.780 3.220 19 H -0.192 1.192 20 H -0.206 1.206 21 H -0.206 1.206 22 C -0.138 4.138 23 C -0.062 4.062 24 H 0.074 0.926 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.043 0.957 40 H 0.027 0.973 41 H 0.092 0.908 42 H 0.049 0.951 43 H 0.078 0.922 44 H 0.004 0.996 45 H 0.069 0.931 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.106 0.894 49 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges -21.155 -5.748 -4.113 22.304 hybrid contribution 1.181 0.515 0.917 1.581 sum -19.974 -5.234 -3.197 20.894 Atomic orbital electron populations 1.21777 0.95534 1.01794 1.01857 1.21593 0.96100 0.96821 1.01980 1.21622 0.94129 0.96983 1.02035 1.21125 0.95600 0.95886 0.98146 0.91540 1.21930 1.00652 1.00921 0.97260 1.21546 0.93902 0.96779 1.02087 1.21590 0.95847 0.95484 1.01890 1.22188 0.86587 0.97900 1.00500 1.61971 1.05858 1.25192 1.33870 1.22043 0.95594 0.98687 0.89488 1.21420 0.92371 0.98913 1.00652 1.18675 0.93595 0.92871 0.92460 1.21620 0.93805 1.43654 0.97910 0.93064 1.25773 1.02954 0.95141 0.94960 1.70031 1.36097 1.45955 1.03762 0.85558 0.80410 0.77687 0.78319 1.19182 1.20635 1.20573 1.21549 0.93779 0.99772 0.98682 1.22048 0.95790 0.88798 0.99593 0.92630 0.92500 0.92754 0.91979 0.92239 0.91755 0.92101 0.93532 0.92873 0.92076 0.91193 0.92176 0.92695 0.91935 0.89861 0.95686 0.97259 0.90839 0.95131 0.92158 0.99592 0.93101 0.93021 0.92830 0.89389 0.96351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 9.91 71.98 0.71 -1.08 16 2 C -0.13 -1.71 5.69 30.60 0.17 -1.54 16 3 C -0.11 -1.59 4.68 30.59 0.14 -1.44 16 4 C -0.09 -1.52 2.39 -10.79 -0.03 -1.54 16 5 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 6 C -0.15 -2.72 8.70 71.98 0.63 -2.10 16 7 C -0.11 -1.96 4.68 30.59 0.14 -1.81 16 8 C -0.11 -2.66 4.90 30.59 0.15 -2.51 16 9 C 0.06 1.53 4.96 86.31 0.43 1.95 16 10 N -0.54 -19.31 4.66 -896.36 -4.17 -23.48 16 11 C 0.07 2.82 5.29 86.33 0.46 3.27 16 12 C -0.10 -4.73 5.12 30.65 0.16 -4.57 16 13 C 0.04 2.23 2.16 -11.46 -0.02 2.20 16 14 C -0.53 -30.35 8.57 25.60 0.22 -30.13 16 15 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 16 C 0.01 0.56 5.31 84.65 0.45 1.01 16 17 N -0.92 -54.35 11.37 21.45 0.24 -54.10 16 18 Si 0.95 44.66 29.54 68.60 2.03 46.68 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 22 C -0.10 -4.31 5.32 30.65 0.16 -4.15 16 23 C 0.07 2.35 5.46 86.33 0.47 2.82 16 24 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.06 0.85 6.56 -2.39 -0.02 0.84 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 0.96 6.57 -2.39 -0.02 0.95 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 0.99 6.56 -2.39 -0.02 0.98 16 34 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 36 H 0.05 1.45 4.85 -2.39 -0.01 1.44 16 37 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.08 2.00 7.99 -2.39 -0.02 1.98 16 39 H 0.02 0.69 8.12 -2.39 -0.02 0.67 16 40 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.07 2.72 6.21 -2.38 -0.01 2.70 16 42 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.06 3.35 6.17 -2.39 -0.01 3.34 16 44 H -0.01 -0.82 8.14 -2.39 -0.02 -0.84 16 45 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 46 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.05 2.21 8.14 -2.38 -0.02 2.19 16 48 H 0.09 2.63 8.01 -2.39 -0.02 2.61 16 49 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -60.85 365.56 3.19 -57.65 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.85 Total: 12.86 kcal Atomic # 6 Polarization: -43.86 SS G_CDS: 4.24 Total: -39.61 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -3.93 Total: -77.59 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Total: -60.85 3.19 -57.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599356745.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.079 kcal (2) G-P(sol) polarization free energy of solvation -60.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds