Wall clock time and date at job start Mon Mar 30 2020 07:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47262 * 2 1 4 4 C 1.52998 * 109.47262 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47167 * 304.99929 * 4 3 2 6 6 C 1.53005 * 109.47251 * 64.99906 * 4 3 2 7 7 C 1.52998 * 109.47384 * 185.00070 * 4 3 2 8 8 C 1.53001 * 109.47409 * 175.00129 * 7 4 3 9 9 C 1.52998 * 109.47409 * 180.02562 * 8 7 4 10 10 N 1.46897 * 109.47268 * 180.02562 * 9 8 7 11 11 C 1.46854 * 110.99665 * 293.95495 * 10 9 8 12 12 C 1.53037 * 109.51886 * 185.84309 * 11 10 9 13 13 C 1.53126 * 109.27801 * 300.81620 * 12 11 10 14 14 C 1.53124 * 109.15878 * 57.65645 * 13 12 11 15 15 H 1.08999 * 109.50059 * 62.28737 * 14 13 12 16 16 C 1.50696 * 109.50007 * 182.40592 * 14 13 12 17 17 H 1.07997 * 120.00077 * 120.00524 * 16 14 13 18 18 C 1.37872 * 120.00039 * 299.99707 * 16 14 13 19 19 N 1.31516 * 120.00300 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00131 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46842 * 90.00399 * 20 18 16 22 22 H 1.48495 * 109.47554 * 210.00488 * 20 18 16 23 23 H 1.48498 * 109.47227 * 330.00616 * 20 18 16 24 24 C 1.46844 * 111.00090 * 58.16171 * 10 9 8 25 25 H 1.09007 * 109.46949 * 299.99758 * 1 2 3 26 26 H 1.09002 * 109.47293 * 59.99603 * 1 2 3 27 27 H 1.09005 * 109.47173 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47176 * 239.99769 * 2 1 3 29 29 H 1.09002 * 109.47293 * 120.00397 * 2 1 3 30 30 H 1.08997 * 109.46985 * 60.00293 * 3 2 1 31 31 H 1.09002 * 109.47291 * 300.00399 * 3 2 1 32 32 H 1.08990 * 109.47103 * 180.02562 * 6 4 3 33 33 H 1.09006 * 109.46915 * 300.00409 * 6 4 3 34 34 H 1.09004 * 109.46393 * 59.99825 * 6 4 3 35 35 H 1.08999 * 109.47139 * 54.99850 * 7 4 3 36 36 H 1.09004 * 109.47207 * 295.00173 * 7 4 3 37 37 H 1.08999 * 109.47199 * 59.99757 * 8 7 4 38 38 H 1.09004 * 109.46972 * 300.00187 * 8 7 4 39 39 H 1.08998 * 109.46651 * 59.99512 * 9 8 7 40 40 H 1.09003 * 109.46734 * 300.00278 * 9 8 7 41 41 H 1.08994 * 109.46310 * 65.82535 * 11 10 9 42 42 H 1.09004 * 109.45281 * 305.84691 * 11 10 9 43 43 H 1.09000 * 109.50480 * 180.88135 * 12 11 10 44 44 H 1.09002 * 109.53848 * 60.77851 * 12 11 10 45 45 H 1.08998 * 109.52297 * 177.56592 * 13 12 11 46 46 H 1.08999 * 109.51925 * 297.75795 * 13 12 11 47 47 H 0.97000 * 120.00526 * 179.97438 * 19 18 16 48 48 H 1.09002 * 109.46133 * 294.17882 * 24 10 9 49 49 H 1.09002 * 109.46165 * 54.15521 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8326 -1.3064 7 6 4.0800 2.8794 0.1264 8 6 5.6048 2.8703 0.2524 9 6 6.1147 4.3073 0.3788 10 7 7.5787 4.2985 0.4991 11 6 7.9996 3.6666 1.7562 12 6 9.5153 3.8049 1.9156 13 6 10.2118 3.1351 0.7277 14 6 9.7197 3.7788 -0.5716 15 1 9.9908 4.8345 -0.5800 16 6 10.3559 3.0857 -1.7488 17 1 9.7370 2.5987 -2.4878 18 6 11.7281 3.0735 -1.8826 19 7 12.4818 3.6663 -0.9825 20 14 12.5166 2.2149 -3.3422 21 1 12.6648 3.1785 -4.4624 22 1 13.8539 1.7011 -2.9511 23 1 11.6581 1.0826 -3.7735 24 6 8.1981 3.6414 -0.6588 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 5.1705 0.8322 -1.3057 33 1 3.7172 -0.1912 -1.3960 34 1 3.7175 1.4220 -2.1484 35 1 3.6450 3.3432 1.0117 36 1 3.7920 3.4460 -0.7592 37 1 6.0398 2.4066 -0.6329 38 1 5.8928 2.3037 1.1380 39 1 5.6796 4.7705 1.2643 40 1 5.8266 4.8742 -0.5066 41 1 7.7310 2.6104 1.7394 42 1 7.5004 4.1551 2.5930 43 1 9.8295 3.3221 2.8410 44 1 9.7838 4.8609 1.9467 45 1 11.2900 3.2687 0.8149 46 1 9.9751 2.0711 0.7194 47 1 13.4473 3.6574 -1.0764 48 1 7.9285 2.5853 -0.6642 49 1 7.8431 4.1115 -1.5760 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599470026.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:21 Heat of formation + Delta-G solvation = -48.503450 kcal Electronic energy + Delta-G solvation = -21157.834049 eV Core-core repulsion = 18310.693291 eV Total energy + Delta-G solvation = -2847.140758 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.70299 -37.43095 -34.57131 -33.17854 -31.85408 -29.86001 -29.52627 -26.86138 -25.60514 -24.90159 -23.31976 -21.58409 -21.29272 -20.57316 -19.96699 -18.21157 -16.35708 -15.72900 -15.26668 -14.87792 -14.62668 -14.46472 -14.08930 -13.82076 -13.57488 -13.40478 -12.87455 -12.62792 -12.44604 -12.32918 -12.05291 -11.89955 -11.66125 -11.58334 -11.51519 -11.28431 -11.02595 -10.94118 -10.79111 -10.63500 -10.59270 -10.52612 -10.35788 -10.21118 -9.93828 -9.75370 -9.40991 -8.97482 -8.65552 -8.26490 -7.50876 -5.93855 -3.99919 3.32767 3.39375 3.42302 4.43417 4.51043 4.70196 4.70664 4.82012 4.96239 5.10414 5.20017 5.26261 5.36026 5.43580 5.50863 5.58115 5.59314 5.70915 5.71806 5.74573 5.78864 5.85034 5.86875 5.94427 5.99121 6.03782 6.07901 6.13348 6.14139 6.19839 6.30444 6.34625 6.46217 6.48995 6.55911 6.60482 6.78864 6.82573 7.04110 7.27439 7.46239 7.74719 7.79881 7.91499 8.13779 8.22437 8.52913 9.04384 9.64170 11.12110 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.003716 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.673026 B = 7533.337312 C = 8411.954608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.092 4.092 5 H 0.066 0.934 6 C -0.150 4.150 7 C -0.108 4.108 8 C -0.160 4.160 9 C 0.056 3.944 10 N -0.538 5.538 11 C 0.062 3.938 12 C -0.118 4.118 13 C -0.110 4.110 14 C 0.054 3.946 15 H 0.032 0.968 16 C -0.513 4.513 17 H 0.053 0.947 18 C 0.062 3.938 19 N -0.889 5.889 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.067 3.933 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.068 0.932 41 H 0.025 0.975 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.059 0.941 45 H 0.090 0.910 46 H 0.029 0.971 47 H 0.259 0.741 48 H 0.022 0.978 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.859 -4.057 4.056 19.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.111 4.111 5 H 0.085 0.915 6 C -0.208 4.208 7 C -0.147 4.147 8 C -0.199 4.199 9 C -0.073 4.073 10 N -0.261 5.261 11 C -0.066 4.066 12 C -0.156 4.156 13 C -0.148 4.148 14 C 0.035 3.965 15 H 0.051 0.949 16 C -0.552 4.552 17 H 0.071 0.929 18 C -0.139 4.139 19 N -0.528 5.528 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.200 1.200 24 C -0.060 4.060 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.043 0.957 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.108 0.892 46 H 0.047 0.953 47 H 0.069 0.931 48 H 0.040 0.960 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.490 -3.524 4.106 19.265 hybrid contribution 0.188 -1.373 -0.782 1.591 sum -18.302 -4.897 3.324 19.235 Atomic orbital electron populations 1.21784 0.96191 1.01364 1.01657 1.21594 0.95494 0.97306 1.02085 1.21666 0.95241 0.96483 1.01788 1.21171 0.94684 0.96786 0.98444 0.91514 1.21929 1.01593 1.00252 0.96980 1.21561 0.95708 0.95880 1.01507 1.22342 0.95373 0.99686 1.02520 1.22184 0.88810 0.94808 1.01452 1.62220 1.05478 1.55186 1.03234 1.22016 0.97124 0.95988 0.91441 1.21686 0.93619 1.01318 0.98988 1.21646 1.02628 0.96789 0.93762 1.18669 0.87557 0.97143 0.93144 0.94939 1.21155 0.91494 1.34692 1.07848 0.92912 1.24935 0.97368 0.95460 0.96107 1.69894 1.04665 1.43866 1.34352 0.86644 0.78694 0.79876 0.83060 1.20725 1.21299 1.20030 1.22294 0.98212 0.94862 0.90606 0.92908 0.92853 0.92990 0.91789 0.92215 0.92235 0.92110 0.92192 0.92908 0.92846 0.92381 0.92124 0.91084 0.92250 0.91880 0.91389 0.95732 0.92702 0.93692 0.92192 0.89174 0.95264 0.93103 0.95971 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -1.04 5.69 -26.73 -0.15 -1.20 16 3 C -0.11 -1.01 4.68 -26.73 -0.13 -1.13 16 4 C -0.09 -0.95 2.39 -90.62 -0.22 -1.16 16 5 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.15 -1.62 8.70 37.16 0.32 -1.29 16 7 C -0.11 -1.20 4.68 -26.73 -0.13 -1.32 16 8 C -0.16 -2.19 4.27 -26.73 -0.11 -2.31 16 9 C 0.06 0.85 5.36 -3.83 -0.02 0.83 16 10 N -0.54 -10.16 4.86 -234.67 -1.14 -11.30 16 11 C 0.06 1.12 5.05 -3.83 -0.02 1.10 16 12 C -0.12 -2.37 6.09 -26.65 -0.16 -2.54 16 13 C -0.11 -2.66 5.02 -26.60 -0.13 -2.79 16 14 C 0.05 1.37 2.26 -91.69 -0.21 1.16 16 15 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.51 -14.23 8.56 -34.44 -0.29 -14.52 16 17 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 18 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -25.65 11.35 55.43 0.63 -25.03 16 20 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 24 C 0.07 1.45 4.06 -3.84 -0.02 1.43 16 25 H 0.05 0.36 8.14 -51.92 -0.42 -0.06 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 33 H 0.05 0.52 6.57 -51.93 -0.34 0.18 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.07 1.09 4.93 -51.93 -0.26 0.83 16 38 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 39 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.02 0.44 6.75 -51.93 -0.35 0.09 16 42 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 45 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 46 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 47 H 0.26 7.13 8.31 -40.82 -0.34 6.80 16 48 H 0.02 0.48 6.61 -51.93 -0.34 0.14 16 49 H 0.06 1.21 8.12 -51.93 -0.42 0.79 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -27.90 362.36 -10.84 -38.75 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -9.78 Total: -1.47 kcal Atomic # 6 Polarization: -21.84 SS G_CDS: -0.99 Total: -22.83 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.51 Total: -36.32 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.90 -10.84 -38.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599470026.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.756 kcal (2) G-P(sol) polarization free energy of solvation -27.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds