Wall clock time and date at job start Mon Mar 30 2020 07:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47262 * 2 1 4 4 C 1.52998 * 109.47262 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47167 * 304.99929 * 4 3 2 6 6 C 1.53005 * 109.47251 * 64.99906 * 4 3 2 7 7 C 1.52998 * 109.47384 * 185.00070 * 4 3 2 8 8 C 1.53001 * 109.47409 * 175.00129 * 7 4 3 9 9 C 1.52998 * 109.47409 * 180.02562 * 8 7 4 10 10 N 1.46897 * 109.47268 * 180.02562 * 9 8 7 11 11 C 1.46854 * 110.99665 * 293.95495 * 10 9 8 12 12 C 1.53037 * 109.51886 * 185.84309 * 11 10 9 13 13 C 1.53126 * 109.27801 * 300.81620 * 12 11 10 14 14 C 1.53124 * 109.15878 * 57.65645 * 13 12 11 15 15 H 1.08999 * 109.50059 * 62.28737 * 14 13 12 16 16 C 1.50696 * 109.50007 * 182.40592 * 14 13 12 17 17 H 1.07997 * 120.00077 * 120.00524 * 16 14 13 18 18 C 1.37872 * 120.00039 * 299.99707 * 16 14 13 19 19 N 1.31516 * 120.00300 * 0.02562 * 18 16 14 20 20 Si 1.86803 * 120.00131 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.46842 * 90.00399 * 20 18 16 22 22 H 1.48495 * 109.47554 * 210.00488 * 20 18 16 23 23 H 1.48498 * 109.47227 * 330.00616 * 20 18 16 24 24 C 1.46844 * 111.00090 * 58.16171 * 10 9 8 25 25 H 1.09007 * 109.46949 * 299.99758 * 1 2 3 26 26 H 1.09002 * 109.47293 * 59.99603 * 1 2 3 27 27 H 1.09005 * 109.47173 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47176 * 239.99769 * 2 1 3 29 29 H 1.09002 * 109.47293 * 120.00397 * 2 1 3 30 30 H 1.08997 * 109.46985 * 60.00293 * 3 2 1 31 31 H 1.09002 * 109.47291 * 300.00399 * 3 2 1 32 32 H 1.08990 * 109.47103 * 180.02562 * 6 4 3 33 33 H 1.09006 * 109.46915 * 300.00409 * 6 4 3 34 34 H 1.09004 * 109.46393 * 59.99825 * 6 4 3 35 35 H 1.08999 * 109.47139 * 54.99850 * 7 4 3 36 36 H 1.09004 * 109.47207 * 295.00173 * 7 4 3 37 37 H 1.08999 * 109.47199 * 59.99757 * 8 7 4 38 38 H 1.09004 * 109.46972 * 300.00187 * 8 7 4 39 39 H 1.08998 * 109.46651 * 59.99512 * 9 8 7 40 40 H 1.09003 * 109.46734 * 300.00278 * 9 8 7 41 41 H 1.08994 * 109.46310 * 65.82535 * 11 10 9 42 42 H 1.09004 * 109.45281 * 305.84691 * 11 10 9 43 43 H 1.09000 * 109.50480 * 180.88135 * 12 11 10 44 44 H 1.09002 * 109.53848 * 60.77851 * 12 11 10 45 45 H 1.08998 * 109.52297 * 177.56592 * 13 12 11 46 46 H 1.08999 * 109.51925 * 297.75795 * 13 12 11 47 47 H 0.97000 * 120.00526 * 179.97438 * 19 18 16 48 48 H 1.09002 * 109.46133 * 294.17882 * 24 10 9 49 49 H 1.09002 * 109.46165 * 54.15521 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 6 4.0806 0.8326 -1.3064 7 6 4.0800 2.8794 0.1264 8 6 5.6048 2.8703 0.2524 9 6 6.1147 4.3073 0.3788 10 7 7.5787 4.2985 0.4991 11 6 7.9996 3.6666 1.7562 12 6 9.5153 3.8049 1.9156 13 6 10.2118 3.1351 0.7277 14 6 9.7197 3.7788 -0.5716 15 1 9.9908 4.8345 -0.5800 16 6 10.3559 3.0857 -1.7488 17 1 9.7370 2.5987 -2.4878 18 6 11.7281 3.0735 -1.8826 19 7 12.4818 3.6663 -0.9825 20 14 12.5166 2.2149 -3.3422 21 1 12.6648 3.1785 -4.4624 22 1 13.8539 1.7011 -2.9511 23 1 11.6581 1.0826 -3.7735 24 6 8.1981 3.6414 -0.6588 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5139 0.8900 30 1 1.6767 1.9562 0.8900 31 1 1.6766 1.9563 -0.8900 32 1 5.1705 0.8322 -1.3057 33 1 3.7172 -0.1912 -1.3960 34 1 3.7175 1.4220 -2.1484 35 1 3.6450 3.3432 1.0117 36 1 3.7920 3.4460 -0.7592 37 1 6.0398 2.4066 -0.6329 38 1 5.8928 2.3037 1.1380 39 1 5.6796 4.7705 1.2643 40 1 5.8266 4.8742 -0.5066 41 1 7.7310 2.6104 1.7394 42 1 7.5004 4.1551 2.5930 43 1 9.8295 3.3221 2.8410 44 1 9.7838 4.8609 1.9467 45 1 11.2900 3.2687 0.8149 46 1 9.9751 2.0711 0.7194 47 1 13.4473 3.6574 -1.0764 48 1 7.9285 2.5853 -0.6642 49 1 7.8431 4.1115 -1.5760 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599470026.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:20 Heat of formation + Delta-G solvation = -61.957024 kcal Electronic energy + Delta-G solvation = -21158.417440 eV Core-core repulsion = 18310.693291 eV Total energy + Delta-G solvation = -2847.724149 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16300 -38.39698 -36.05214 -34.55296 -33.32166 -31.68079 -30.73179 -27.62735 -26.96331 -26.75714 -24.54280 -23.20634 -22.47985 -21.81150 -20.78658 -19.90921 -18.42518 -16.87753 -16.49055 -16.21567 -16.06750 -15.61920 -15.42160 -15.10304 -14.74653 -14.53373 -14.42589 -14.14297 -13.87522 -13.43034 -13.23055 -13.07183 -12.89236 -12.81389 -12.66522 -12.60137 -12.55333 -12.39802 -12.14486 -11.94059 -11.77549 -11.71327 -11.43956 -11.41587 -11.32872 -11.18607 -11.09874 -10.81636 -10.64855 -10.37839 -8.99867 -8.07960 -6.22326 1.40693 1.40816 1.51266 2.42540 3.18634 3.21539 3.72507 3.93228 4.01646 4.14061 4.19846 4.26049 4.31730 4.36990 4.41315 4.46899 4.58091 4.63604 4.66431 4.68801 4.78150 4.83834 4.87417 4.90687 4.93531 4.96179 5.00498 5.06020 5.08070 5.14162 5.17295 5.20190 5.25124 5.28498 5.33509 5.36818 5.41888 5.47384 5.53401 5.58613 5.59910 5.63515 5.97960 6.14255 6.22963 6.43569 6.47949 6.90703 7.45529 8.96739 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.022082 B = 0.003716 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.673026 B = 7533.337312 C = 8411.954608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.090 4.090 5 H 0.062 0.938 6 C -0.149 4.149 7 C -0.102 4.102 8 C -0.151 4.151 9 C 0.057 3.943 10 N -0.552 5.552 11 C 0.067 3.933 12 C -0.112 4.112 13 C -0.104 4.104 14 C 0.051 3.949 15 H -0.007 1.007 16 C -0.536 4.536 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.275 1.275 22 H -0.282 1.282 23 H -0.268 1.268 24 C 0.085 3.915 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.039 0.961 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.062 0.938 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.028 0.972 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.021 0.979 47 H 0.260 0.740 48 H 0.019 0.981 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.797 -4.537 4.516 21.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.147 4.147 4 C -0.108 4.108 5 H 0.080 0.920 6 C -0.207 4.207 7 C -0.140 4.140 8 C -0.190 4.190 9 C -0.071 4.071 10 N -0.275 5.275 11 C -0.061 4.061 12 C -0.150 4.150 13 C -0.142 4.142 14 C 0.032 3.968 15 H 0.011 0.989 16 C -0.574 4.574 17 H 0.068 0.932 18 C -0.186 4.186 19 N -0.556 5.556 20 Si 0.779 3.221 21 H -0.201 1.201 22 H -0.208 1.208 23 H -0.193 1.193 24 C -0.042 4.042 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.104 0.896 40 H 0.087 0.913 41 H 0.046 0.954 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.040 0.960 47 H 0.069 0.931 48 H 0.037 0.963 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.449 -4.002 4.570 21.332 hybrid contribution 0.797 -1.196 -0.914 1.703 sum -19.652 -5.198 3.656 20.654 Atomic orbital electron populations 1.21774 0.95372 1.01819 1.01932 1.21590 0.96229 0.96832 1.01868 1.21615 0.93894 0.96990 1.02163 1.21138 0.95783 0.96097 0.97789 0.91953 1.21917 1.00258 1.00955 0.97532 1.21508 0.93610 0.96574 1.02270 1.22219 0.97210 0.98298 1.01303 1.22273 0.86251 0.95914 1.02652 1.62145 1.07937 1.54933 1.02483 1.22008 0.95496 0.96624 0.91957 1.21607 0.95119 1.00269 0.98024 1.21455 1.01010 0.96552 0.95167 1.18604 0.90390 0.94444 0.93347 0.98881 1.21521 0.92122 1.35037 1.08740 0.93167 1.25732 0.97925 0.96118 0.98776 1.70039 1.04839 1.44774 1.35911 0.85622 0.77762 0.78939 0.79733 1.20116 1.20799 1.19294 1.21908 0.95639 0.94866 0.91825 0.92536 0.92678 0.92502 0.92133 0.92349 0.91591 0.91958 0.94179 0.92114 0.92713 0.90979 0.91888 0.93168 0.92651 0.89605 0.91252 0.95379 0.89527 0.91314 0.93254 0.92455 0.96022 0.93064 0.96266 0.93187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.13 -1.85 5.69 30.59 0.17 -1.68 16 3 C -0.11 -1.68 4.68 30.59 0.14 -1.54 16 4 C -0.09 -1.67 2.39 -10.79 -0.03 -1.70 16 5 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 6 C -0.15 -3.08 8.70 71.98 0.63 -2.45 16 7 C -0.10 -2.01 4.68 30.59 0.14 -1.87 16 8 C -0.15 -3.90 4.27 30.59 0.13 -3.77 16 9 C 0.06 1.60 5.36 86.30 0.46 2.06 16 10 N -0.55 -20.25 4.86 -896.36 -4.35 -24.60 16 11 C 0.07 2.28 5.05 86.32 0.44 2.71 16 12 C -0.11 -4.44 6.09 30.65 0.19 -4.25 16 13 C -0.10 -5.12 5.02 30.68 0.15 -4.97 16 14 C 0.05 2.68 2.26 -11.49 -0.03 2.66 16 15 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 16 C -0.54 -30.51 8.56 25.60 0.22 -30.29 16 17 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 18 C 0.01 0.74 5.30 84.65 0.45 1.19 16 19 N -0.92 -54.35 11.35 21.45 0.24 -54.11 16 20 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 23 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 24 C 0.09 3.72 4.06 86.33 0.35 4.07 16 25 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 26 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.91 6.57 -2.39 -0.02 0.90 16 29 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.97 6.57 -2.39 -0.02 0.96 16 33 H 0.06 1.13 6.57 -2.38 -0.02 1.11 16 34 H 0.05 1.09 8.14 -2.38 -0.02 1.07 16 35 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.24 8.14 -2.38 -0.02 1.22 16 37 H 0.05 1.51 4.93 -2.39 -0.01 1.50 16 38 H 0.05 1.47 6.68 -2.38 -0.02 1.46 16 39 H 0.09 2.07 8.06 -2.39 -0.02 2.05 16 40 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.03 0.95 6.75 -2.39 -0.02 0.93 16 42 H 0.09 2.46 8.06 -2.38 -0.02 2.44 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.06 3.20 6.15 -2.39 -0.01 3.18 16 46 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 47 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 48 H 0.02 0.84 6.61 -2.39 -0.02 0.83 16 49 H 0.05 2.20 8.12 -2.39 -0.02 2.18 16 Total: -1.00 -61.08 362.36 2.91 -58.18 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: 0.86 Total: 15.01 kcal Atomic # 6 Polarization: -45.14 SS G_CDS: 4.14 Total: -41.01 kcal Atomic # 7 Polarization: -74.60 SS G_CDS: -4.11 Total: -78.71 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -61.08 2.91 -58.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599470026.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.782 kcal (2) G-P(sol) polarization free energy of solvation -61.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds