Wall clock time and date at job start Mon Mar 30 2020 07:21:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47546 * 2 1 4 4 C 1.52998 * 109.47546 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46839 * 54.99918 * 4 3 2 6 6 C 1.52996 * 109.47041 * 295.00232 * 4 3 2 7 7 C 1.52994 * 109.47387 * 175.00235 * 4 3 2 8 8 C 1.52998 * 109.47433 * 184.99888 * 7 4 3 9 9 C 1.53004 * 109.47463 * 179.97438 * 8 7 4 10 10 N 1.46898 * 109.46850 * 180.02562 * 9 8 7 11 11 C 1.46845 * 111.00565 * 45.79157 * 10 9 8 12 12 C 1.53034 * 109.52676 * 185.84030 * 11 10 9 13 13 C 1.53126 * 109.27454 * 300.81918 * 12 11 10 14 14 C 1.53119 * 109.16048 * 57.65518 * 13 12 11 15 15 H 1.09004 * 109.50364 * 62.32521 * 14 13 12 16 16 C 1.50705 * 109.50316 * 182.40389 * 14 13 12 17 17 H 1.07990 * 119.99883 * 119.99811 * 16 14 13 18 18 C 1.37878 * 119.99667 * 300.00057 * 16 14 13 19 19 N 1.31517 * 119.99544 * 179.97438 * 18 16 14 20 20 Si 1.86795 * 120.00340 * 359.97438 * 18 16 14 21 21 H 1.48501 * 109.47550 * 89.99860 * 20 18 16 22 22 H 1.48497 * 109.47188 * 210.00399 * 20 18 16 23 23 H 1.48505 * 109.47004 * 330.00168 * 20 18 16 24 24 C 1.46850 * 110.99813 * 170.00223 * 10 9 8 25 25 H 1.09004 * 109.47236 * 59.99638 * 1 2 3 26 26 H 1.08995 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47137 * 300.00357 * 1 2 3 28 28 H 1.08997 * 109.46939 * 240.00346 * 2 1 3 29 29 H 1.08998 * 109.46826 * 120.00200 * 2 1 3 30 30 H 1.09011 * 109.47159 * 59.99915 * 3 2 1 31 31 H 1.09004 * 109.47149 * 300.00416 * 3 2 1 32 32 H 1.09000 * 109.47417 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.47562 * 299.99969 * 6 4 3 34 34 H 1.09003 * 109.47385 * 59.99893 * 6 4 3 35 35 H 1.09006 * 109.47136 * 65.00090 * 7 4 3 36 36 H 1.08999 * 109.47418 * 305.00072 * 7 4 3 37 37 H 1.09006 * 109.46795 * 59.99992 * 8 7 4 38 38 H 1.08999 * 109.46969 * 300.00458 * 8 7 4 39 39 H 1.08995 * 109.46637 * 60.00012 * 9 8 7 40 40 H 1.09001 * 109.46762 * 299.99969 * 9 8 7 41 41 H 1.08995 * 109.46315 * 65.81881 * 11 10 9 42 42 H 1.09005 * 109.45975 * 305.85394 * 11 10 9 43 43 H 1.08997 * 109.50792 * 180.88024 * 12 11 10 44 44 H 1.09006 * 109.50471 * 60.75677 * 12 11 10 45 45 H 1.08999 * 109.52028 * 177.55723 * 13 12 11 46 46 H 1.09000 * 109.52072 * 297.68377 * 13 12 11 47 47 H 0.96999 * 119.99553 * 179.97438 * 19 18 16 48 48 H 1.09005 * 109.46186 * 54.13967 * 24 10 9 49 49 H 1.09004 * 109.45360 * 294.17122 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0806 0.8326 1.3063 7 6 4.0800 2.8794 -0.1263 8 6 5.6048 2.8703 -0.2523 9 6 6.1148 4.3073 -0.3786 10 7 7.5787 4.2983 -0.5002 11 6 8.0205 3.2839 -1.4657 12 6 9.5487 3.2027 -1.4590 13 6 10.1292 4.5712 -1.8266 14 6 9.6151 5.6181 -0.8345 15 1 9.9617 5.3699 0.1687 16 6 10.1345 6.9782 -1.2241 17 1 9.4427 7.7724 -1.4622 18 6 11.4929 7.2082 -1.2764 19 7 11.9462 8.3950 -1.6169 20 14 12.6896 5.8345 -0.8639 21 1 13.0211 5.0792 -2.0987 22 1 13.9303 6.4145 -0.2901 23 1 12.0684 4.9175 0.1254 24 6 8.0850 5.6292 -0.8593 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 5.1706 0.8321 1.3058 33 1 3.7176 1.4218 2.1485 34 1 3.7173 -0.1912 1.3959 35 1 3.7921 3.4459 0.7593 36 1 3.6451 3.3432 -1.0116 37 1 5.8928 2.3038 -1.1380 38 1 6.0398 2.4064 0.6330 39 1 5.8268 4.8741 0.5067 40 1 5.6798 4.7706 -1.2642 41 1 7.6756 3.5571 -2.4629 42 1 7.6042 2.3149 -1.1903 43 1 9.8769 2.4608 -2.1869 44 1 9.8936 2.9161 -0.4655 45 1 11.2174 4.5294 -1.7809 46 1 9.8171 4.8401 -2.8358 47 1 12.9018 8.5569 -1.6533 48 1 7.7155 6.3636 -0.1435 49 1 7.7398 5.8913 -1.8595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599470031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:23 Heat of formation + Delta-G solvation = -38.743777 kcal Electronic energy + Delta-G solvation = -20901.296436 eV Core-core repulsion = 18054.578889 eV Total energy + Delta-G solvation = -2846.717547 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.78380 -37.63714 -34.81455 -33.22722 -32.05523 -30.41950 -29.90278 -26.97712 -25.93342 -24.97164 -23.30261 -21.89007 -21.47253 -20.10744 -19.95901 -18.83881 -16.67731 -15.86045 -15.67192 -15.31741 -14.69196 -14.33653 -14.25672 -14.03397 -13.67350 -13.51938 -13.08622 -12.91238 -12.68883 -12.40022 -12.28803 -12.07050 -11.95611 -11.83700 -11.72152 -11.34189 -11.16795 -11.01469 -10.96398 -10.76469 -10.65152 -10.53599 -10.32992 -10.26673 -10.00821 -9.87433 -9.63010 -9.03489 -8.87745 -8.47976 -7.73441 -6.03732 -4.02483 3.31184 3.42198 3.46214 4.28545 4.45781 4.56821 4.61784 4.70993 4.87226 5.00847 5.12477 5.15844 5.27893 5.29711 5.41798 5.43851 5.51017 5.52292 5.61250 5.62401 5.63641 5.71473 5.75913 5.81053 5.83082 5.90086 5.92761 5.97702 6.01384 6.08674 6.12055 6.17713 6.23274 6.33819 6.34616 6.38668 6.41056 6.55096 6.65736 6.86064 6.88625 7.25010 7.47401 7.69207 7.70218 7.91995 8.56089 8.99612 9.59341 11.09579 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.048581 B = 0.003035 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.214363 B = 9222.664529 C = 9497.057110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.115 4.115 4 C -0.092 4.092 5 H 0.067 0.933 6 C -0.150 4.150 7 C -0.113 4.113 8 C -0.123 4.123 9 C 0.056 3.944 10 N -0.543 5.543 11 C 0.058 3.942 12 C -0.120 4.120 13 C -0.122 4.122 14 C 0.020 3.980 15 H 0.035 0.965 16 C -0.513 4.513 17 H 0.072 0.928 18 C 0.069 3.931 19 N -0.903 5.903 20 Si 0.889 3.111 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.263 1.263 24 C 0.077 3.923 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.069 0.931 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.046 0.954 46 H 0.055 0.945 47 H 0.263 0.737 48 H 0.065 0.935 49 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.464 -16.764 3.028 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.153 4.153 4 C -0.110 4.110 5 H 0.086 0.914 6 C -0.207 4.207 7 C -0.151 4.151 8 C -0.161 4.161 9 C -0.072 4.072 10 N -0.267 5.267 11 C -0.070 4.070 12 C -0.158 4.158 13 C -0.160 4.160 14 C 0.001 3.999 15 H 0.053 0.947 16 C -0.551 4.551 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.542 5.542 20 Si 0.719 3.281 21 H -0.208 1.208 22 H -0.227 1.227 23 H -0.188 1.188 24 C -0.050 4.050 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.064 0.936 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.084 0.916 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -18.116 -16.764 3.457 24.923 hybrid contribution 0.451 -0.347 -0.734 0.929 sum -17.665 -17.111 2.723 24.743 Atomic orbital electron populations 1.21785 0.96150 1.01395 1.01731 1.21590 0.95565 0.97248 1.02024 1.21674 0.95148 0.96532 1.01933 1.21152 0.94831 0.96598 0.98423 0.91411 1.21932 1.01422 1.00301 0.97067 1.21614 0.95669 0.96028 1.01835 1.21810 0.94724 0.97027 1.02500 1.22095 0.88364 0.96466 1.00302 1.62070 1.08692 1.07301 1.48671 1.22091 0.96085 0.95481 0.93339 1.21666 0.94625 0.98400 1.01121 1.22020 0.98993 0.94159 1.00800 1.19159 0.90717 0.94672 0.95396 0.94705 1.21018 0.92479 0.95332 1.46319 0.91002 1.24994 0.98320 0.95396 0.94500 1.69907 1.13967 1.21644 1.48642 0.86810 0.80101 0.82264 0.78878 1.20767 1.22671 1.18798 1.22075 0.97547 0.87383 0.97961 0.92857 0.92974 0.92832 0.92204 0.91827 0.92055 0.92144 0.92245 0.92805 0.92901 0.91944 0.92243 0.91876 0.90974 0.91163 0.95552 0.95689 0.91283 0.92946 0.91896 0.93627 0.92651 0.92738 0.91608 0.95682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.91 37.16 0.37 -0.60 16 2 C -0.13 -0.88 5.69 -26.73 -0.15 -1.04 16 3 C -0.12 -0.88 4.68 -26.73 -0.13 -1.00 16 4 C -0.09 -0.77 2.39 -90.63 -0.22 -0.99 16 5 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 6 C -0.15 -1.25 8.70 37.16 0.32 -0.92 16 7 C -0.11 -1.09 4.68 -26.74 -0.13 -1.22 16 8 C -0.12 -1.42 4.22 -26.73 -0.11 -1.54 16 9 C 0.06 0.80 5.27 -3.82 -0.02 0.78 16 10 N -0.54 -9.62 4.81 -234.67 -1.13 -10.75 16 11 C 0.06 0.95 4.85 -3.84 -0.02 0.94 16 12 C -0.12 -2.18 6.09 -26.65 -0.16 -2.34 16 13 C -0.12 -2.71 4.73 -26.60 -0.13 -2.83 16 14 C 0.02 0.48 1.85 -91.69 -0.17 0.31 16 15 H 0.03 0.89 7.21 -51.93 -0.37 0.51 16 16 C -0.51 -14.61 9.15 -34.44 -0.31 -14.92 16 17 H 0.07 2.20 7.99 -52.49 -0.42 1.78 16 18 C 0.07 2.02 5.45 -17.82 -0.10 1.93 16 19 N -0.90 -28.00 13.96 55.43 0.77 -27.23 16 20 Si 0.89 22.47 24.35 -169.99 -4.14 18.34 16 21 H -0.28 -6.91 6.89 56.52 0.39 -6.52 16 22 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 23 H -0.26 -6.43 6.53 56.52 0.37 -6.06 16 24 C 0.08 1.61 4.65 -3.83 -0.02 1.60 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.44 6.57 -51.93 -0.34 0.10 16 30 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.53 6.57 -51.93 -0.34 0.19 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.05 0.40 6.57 -51.93 -0.34 0.06 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.74 6.21 -51.93 -0.32 0.41 16 38 H 0.07 0.86 6.57 -51.93 -0.34 0.52 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.03 0.38 8.08 -51.93 -0.42 -0.03 16 41 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.98 5.81 -51.93 -0.30 0.67 16 43 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.05 1.07 3.34 -51.93 -0.17 0.89 16 46 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 47 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 48 H 0.07 1.37 8.12 -51.93 -0.42 0.95 16 49 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 357.56 15.07 5.39 5.39 Total: -1.00 -29.74 357.56 -9.81 -39.55 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -9.74 Total: -3.44 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -0.97 Total: -21.86 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: -0.35 Total: -37.97 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.14 Total: 18.34 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.74 -9.81 -39.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599470031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.804 kcal (2) G-P(sol) polarization free energy of solvation -29.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds