Wall clock time and date at job start Mon Mar 30 2020 07:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47546 * 2 1 4 4 C 1.52998 * 109.47546 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.46839 * 54.99918 * 4 3 2 6 6 C 1.52996 * 109.47041 * 295.00232 * 4 3 2 7 7 C 1.52994 * 109.47387 * 175.00235 * 4 3 2 8 8 C 1.52998 * 109.47433 * 184.99888 * 7 4 3 9 9 C 1.53004 * 109.47463 * 179.97438 * 8 7 4 10 10 N 1.46898 * 109.46850 * 180.02562 * 9 8 7 11 11 C 1.46845 * 111.00565 * 45.79157 * 10 9 8 12 12 C 1.53034 * 109.52676 * 185.84030 * 11 10 9 13 13 C 1.53126 * 109.27454 * 300.81918 * 12 11 10 14 14 C 1.53119 * 109.16048 * 57.65518 * 13 12 11 15 15 H 1.09004 * 109.50364 * 62.32521 * 14 13 12 16 16 C 1.50705 * 109.50316 * 182.40389 * 14 13 12 17 17 H 1.07990 * 119.99883 * 119.99811 * 16 14 13 18 18 C 1.37878 * 119.99667 * 300.00057 * 16 14 13 19 19 N 1.31517 * 119.99544 * 179.97438 * 18 16 14 20 20 Si 1.86795 * 120.00340 * 359.97438 * 18 16 14 21 21 H 1.48501 * 109.47550 * 89.99860 * 20 18 16 22 22 H 1.48497 * 109.47188 * 210.00399 * 20 18 16 23 23 H 1.48505 * 109.47004 * 330.00168 * 20 18 16 24 24 C 1.46850 * 110.99813 * 170.00223 * 10 9 8 25 25 H 1.09004 * 109.47236 * 59.99638 * 1 2 3 26 26 H 1.08995 * 109.47287 * 179.97438 * 1 2 3 27 27 H 1.09002 * 109.47137 * 300.00357 * 1 2 3 28 28 H 1.08997 * 109.46939 * 240.00346 * 2 1 3 29 29 H 1.08998 * 109.46826 * 120.00200 * 2 1 3 30 30 H 1.09011 * 109.47159 * 59.99915 * 3 2 1 31 31 H 1.09004 * 109.47149 * 300.00416 * 3 2 1 32 32 H 1.09000 * 109.47417 * 179.97438 * 6 4 3 33 33 H 1.09004 * 109.47562 * 299.99969 * 6 4 3 34 34 H 1.09003 * 109.47385 * 59.99893 * 6 4 3 35 35 H 1.09006 * 109.47136 * 65.00090 * 7 4 3 36 36 H 1.08999 * 109.47418 * 305.00072 * 7 4 3 37 37 H 1.09006 * 109.46795 * 59.99992 * 8 7 4 38 38 H 1.08999 * 109.46969 * 300.00458 * 8 7 4 39 39 H 1.08995 * 109.46637 * 60.00012 * 9 8 7 40 40 H 1.09001 * 109.46762 * 299.99969 * 9 8 7 41 41 H 1.08995 * 109.46315 * 65.81881 * 11 10 9 42 42 H 1.09005 * 109.45975 * 305.85394 * 11 10 9 43 43 H 1.08997 * 109.50792 * 180.88024 * 12 11 10 44 44 H 1.09006 * 109.50471 * 60.75677 * 12 11 10 45 45 H 1.08999 * 109.52028 * 177.55723 * 13 12 11 46 46 H 1.09000 * 109.52072 * 297.68377 * 13 12 11 47 47 H 0.96999 * 119.99553 * 179.97438 * 19 18 16 48 48 H 1.09005 * 109.46186 * 54.13967 * 24 10 9 49 49 H 1.09004 * 109.45360 * 294.17122 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0806 0.8326 1.3063 7 6 4.0800 2.8794 -0.1263 8 6 5.6048 2.8703 -0.2523 9 6 6.1148 4.3073 -0.3786 10 7 7.5787 4.2983 -0.5002 11 6 8.0205 3.2839 -1.4657 12 6 9.5487 3.2027 -1.4590 13 6 10.1292 4.5712 -1.8266 14 6 9.6151 5.6181 -0.8345 15 1 9.9617 5.3699 0.1687 16 6 10.1345 6.9782 -1.2241 17 1 9.4427 7.7724 -1.4622 18 6 11.4929 7.2082 -1.2764 19 7 11.9462 8.3950 -1.6169 20 14 12.6896 5.8345 -0.8639 21 1 13.0211 5.0792 -2.0987 22 1 13.9303 6.4145 -0.2901 23 1 12.0684 4.9175 0.1254 24 6 8.0850 5.6292 -0.8593 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 5.1706 0.8321 1.3058 33 1 3.7176 1.4218 2.1485 34 1 3.7173 -0.1912 1.3959 35 1 3.7921 3.4459 0.7593 36 1 3.6451 3.3432 -1.0116 37 1 5.8928 2.3038 -1.1380 38 1 6.0398 2.4064 0.6330 39 1 5.8268 4.8741 0.5067 40 1 5.6798 4.7706 -1.2642 41 1 7.6756 3.5571 -2.4629 42 1 7.6042 2.3149 -1.1903 43 1 9.8769 2.4608 -2.1869 44 1 9.8936 2.9161 -0.4655 45 1 11.2174 4.5294 -1.7809 46 1 9.8171 4.8401 -2.8358 47 1 12.9018 8.5569 -1.6533 48 1 7.7155 6.3636 -0.1435 49 1 7.7398 5.8913 -1.8595 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599470031.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:22 Heat of formation + Delta-G solvation = -55.325769 kcal Electronic energy + Delta-G solvation = -20902.015485 eV Core-core repulsion = 18054.578889 eV Total energy + Delta-G solvation = -2847.436596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.17630 -38.45893 -36.14943 -34.59433 -33.58774 -32.04718 -31.03529 -27.60233 -27.08632 -26.78938 -24.51303 -23.40469 -22.37457 -21.21351 -20.74336 -20.48545 -18.82281 -17.27270 -16.60294 -16.19745 -16.03180 -15.75083 -15.38144 -15.18681 -14.98081 -14.80679 -14.48462 -14.17571 -14.05385 -13.72246 -13.27832 -13.05868 -12.96089 -12.91372 -12.70575 -12.60428 -12.48925 -12.22773 -12.02397 -11.97655 -11.78984 -11.72910 -11.44943 -11.37638 -11.35115 -11.18819 -11.07834 -10.98291 -10.69589 -10.59973 -9.15718 -8.31250 -6.34852 1.29430 1.35945 1.47526 2.32450 3.03668 3.04559 3.76481 3.96603 4.01736 4.03128 4.12569 4.17857 4.22745 4.34173 4.37852 4.45836 4.49112 4.57652 4.61307 4.68503 4.73311 4.79850 4.81084 4.82646 4.88877 4.93802 4.95068 5.03271 5.05634 5.07205 5.11280 5.15180 5.19633 5.24549 5.31224 5.31865 5.36863 5.37644 5.44587 5.48210 5.60869 5.64132 5.65257 5.72682 6.17608 6.30614 6.36723 6.72384 7.30767 8.85643 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.048581 B = 0.003035 C = 0.002948 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 576.214363 B = 9222.664529 C = 9497.057110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C -0.113 4.113 4 C -0.087 4.087 5 H 0.068 0.932 6 C -0.149 4.149 7 C -0.109 4.109 8 C -0.113 4.113 9 C 0.055 3.945 10 N -0.548 5.548 11 C 0.058 3.942 12 C -0.115 4.115 13 C -0.123 4.123 14 C 0.020 3.980 15 H 0.025 0.975 16 C -0.520 4.520 17 H 0.031 0.969 18 C 0.011 3.989 19 N -0.950 5.950 20 Si 0.954 3.046 21 H -0.266 1.266 22 H -0.299 1.299 23 H -0.248 1.248 24 C 0.088 3.912 25 H 0.052 0.948 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.024 0.976 41 H 0.025 0.975 42 H 0.102 0.898 43 H 0.082 0.918 44 H 0.063 0.937 45 H 0.035 0.965 46 H 0.046 0.954 47 H 0.266 0.734 48 H 0.056 0.944 49 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.251 -19.982 3.383 27.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.150 4.150 4 C -0.106 4.106 5 H 0.086 0.914 6 C -0.206 4.206 7 C -0.147 4.147 8 C -0.150 4.150 9 C -0.073 4.073 10 N -0.273 5.273 11 C -0.070 4.070 12 C -0.153 4.153 13 C -0.160 4.160 14 C 0.001 3.999 15 H 0.043 0.957 16 C -0.559 4.559 17 H 0.050 0.950 18 C -0.186 4.186 19 N -0.591 5.591 20 Si 0.781 3.219 21 H -0.192 1.192 22 H -0.227 1.227 23 H -0.172 1.172 24 C -0.040 4.040 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.042 0.958 41 H 0.043 0.957 42 H 0.120 0.880 43 H 0.101 0.899 44 H 0.082 0.918 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.074 0.926 49 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges -18.933 -20.000 3.812 27.803 hybrid contribution 0.607 0.750 -0.851 1.286 sum -18.326 -19.251 2.961 26.743 Atomic orbital electron populations 1.21787 0.95763 1.01795 1.01758 1.21579 0.95927 0.96712 1.02104 1.21643 0.94552 0.97024 1.01830 1.21108 0.95312 0.95620 0.98545 0.91354 1.21921 1.01030 1.00797 0.96868 1.21566 0.94272 0.96984 1.01857 1.21726 0.95875 0.94725 1.02679 1.22188 0.86246 0.98659 1.00168 1.62027 1.10819 1.05494 1.48967 1.22191 0.95199 0.96458 0.93135 1.21655 0.95462 0.96210 1.01986 1.21924 0.98435 0.96081 0.99575 1.19071 0.92877 0.92804 0.95175 0.95735 1.21342 0.92167 0.96723 1.45661 0.95046 1.25876 1.00347 0.97894 0.94452 1.70053 1.14549 1.24026 1.50452 0.85760 0.77392 0.79324 0.79463 1.19235 1.22663 1.17164 1.21773 0.95575 0.89501 0.97135 0.92891 0.92420 0.92774 0.92192 0.91658 0.92150 0.92283 0.92775 0.92938 0.92088 0.91978 0.92240 0.91382 0.90922 0.91229 0.95781 0.95699 0.87991 0.89904 0.91777 0.94663 0.93493 0.92549 0.92565 0.96832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.91 71.98 0.71 -0.96 16 2 C -0.13 -1.49 5.69 30.59 0.17 -1.32 16 3 C -0.11 -1.49 4.68 30.59 0.14 -1.35 16 4 C -0.09 -1.26 2.39 -10.80 -0.03 -1.29 16 5 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 6 C -0.15 -2.12 8.70 71.98 0.63 -1.49 16 7 C -0.11 -1.85 4.68 30.59 0.14 -1.70 16 8 C -0.11 -2.30 4.22 30.59 0.13 -2.17 16 9 C 0.05 1.48 5.27 86.30 0.46 1.94 16 10 N -0.55 -18.48 4.81 -896.37 -4.31 -22.79 16 11 C 0.06 1.71 4.85 86.33 0.42 2.13 16 12 C -0.12 -3.79 6.09 30.65 0.19 -3.60 16 13 C -0.12 -5.25 4.73 30.68 0.15 -5.10 16 14 C 0.02 0.96 1.85 -11.49 -0.02 0.94 16 15 H 0.02 1.23 7.21 -2.38 -0.02 1.22 16 16 C -0.52 -30.64 9.15 25.60 0.23 -30.40 16 17 H 0.03 2.03 7.99 -2.92 -0.02 2.01 16 18 C 0.01 0.66 5.45 84.65 0.46 1.13 16 19 N -0.95 -60.74 13.96 21.45 0.30 -60.44 16 20 Si 0.95 46.43 24.35 68.60 1.67 48.10 16 21 H -0.27 -12.28 6.89 99.48 0.69 -11.60 16 22 H -0.30 -14.44 7.11 99.48 0.71 -13.73 16 23 H -0.25 -11.34 6.53 99.48 0.65 -10.69 16 24 C 0.09 3.69 4.65 86.32 0.40 4.09 16 25 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.06 0.75 6.57 -2.39 -0.02 0.74 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.05 0.83 6.57 -2.39 -0.02 0.81 16 33 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.06 0.76 6.57 -2.39 -0.02 0.75 16 35 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.07 1.34 6.21 -2.38 -0.01 1.32 16 38 H 0.07 1.51 6.57 -2.39 -0.02 1.50 16 39 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.02 0.67 8.08 -2.39 -0.02 0.65 16 41 H 0.02 0.75 8.14 -2.39 -0.02 0.74 16 42 H 0.10 2.43 5.81 -2.38 -0.01 2.41 16 43 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 45 H 0.04 1.57 3.34 -2.39 -0.01 1.56 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 48 H 0.06 2.41 8.12 -2.38 -0.02 2.39 16 49 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -65.25 357.56 2.63 -62.62 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 0.78 Total: 11.67 kcal Atomic # 6 Polarization: -43.34 SS G_CDS: 4.18 Total: -39.16 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -4.01 Total: -83.23 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.67 Total: 48.10 kcal Total: -65.25 2.63 -62.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599470031.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.293 kcal (2) G-P(sol) polarization free energy of solvation -65.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds