Wall clock time and date at job start Mon Mar 30 2020 07:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47304 * 2 1 4 4 C 1.52997 * 109.47384 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47208 * 54.99879 * 4 3 2 6 6 C 1.53001 * 109.47094 * 294.99673 * 4 3 2 7 7 C 1.53008 * 109.47266 * 174.99961 * 4 3 2 8 8 C 1.52999 * 109.46965 * 184.99915 * 7 4 3 9 9 C 1.52999 * 109.46926 * 179.97438 * 8 7 4 10 10 N 1.46899 * 109.47036 * 179.97438 * 9 8 7 11 11 C 1.46847 * 110.99862 * 66.05037 * 10 9 8 12 12 C 1.53044 * 109.51335 * 174.15436 * 11 10 9 13 13 C 1.53119 * 109.27589 * 59.18419 * 12 11 10 14 14 C 1.53120 * 109.16202 * 302.34077 * 13 12 11 15 15 H 1.08996 * 109.50004 * 297.72216 * 14 13 12 16 16 C 1.50697 * 109.50290 * 177.63586 * 14 13 12 17 17 H 1.07997 * 120.00495 * 240.00286 * 16 14 13 18 18 C 1.37880 * 119.99487 * 60.00267 * 16 14 13 19 19 N 1.31518 * 120.00428 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99610 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46967 * 60.00324 * 20 18 16 22 22 H 1.48503 * 109.46839 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47286 * 300.00184 * 20 18 16 24 24 C 1.46847 * 110.99299 * 301.84195 * 10 9 8 25 25 H 1.09000 * 109.46586 * 60.00357 * 1 2 3 26 26 H 1.09002 * 109.46934 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47362 * 300.00340 * 1 2 3 28 28 H 1.08991 * 109.47362 * 239.99660 * 2 1 3 29 29 H 1.09000 * 109.46586 * 119.99643 * 2 1 3 30 30 H 1.09004 * 109.47446 * 59.99465 * 3 2 1 31 31 H 1.08999 * 109.47524 * 299.99950 * 3 2 1 32 32 H 1.08996 * 109.47070 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47262 * 300.00173 * 6 4 3 34 34 H 1.09002 * 109.46994 * 59.99833 * 6 4 3 35 35 H 1.08999 * 109.46834 * 64.99917 * 7 4 3 36 36 H 1.08996 * 109.46703 * 305.00392 * 7 4 3 37 37 H 1.08999 * 109.47343 * 60.00314 * 8 7 4 38 38 H 1.08997 * 109.47101 * 300.00074 * 8 7 4 39 39 H 1.09004 * 109.47161 * 60.00228 * 9 8 7 40 40 H 1.08996 * 109.47358 * 300.00580 * 9 8 7 41 41 H 1.09002 * 109.46448 * 54.14158 * 11 10 9 42 42 H 1.08994 * 109.45958 * 294.16523 * 11 10 9 43 43 H 1.09000 * 109.49745 * 179.12223 * 12 11 10 44 44 H 1.08999 * 109.49729 * 299.20033 * 12 11 10 45 45 H 1.08993 * 109.52284 * 62.25342 * 13 12 11 46 46 H 1.09003 * 109.51690 * 182.37761 * 13 12 11 47 47 H 0.97001 * 119.99568 * 179.97438 * 19 18 16 48 48 H 1.09005 * 109.46836 * 65.83946 * 24 10 9 49 49 H 1.08995 * 109.45748 * 305.85482 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 4.0801 2.8795 -0.1251 8 6 5.6050 2.8703 -0.2498 9 6 6.1150 4.3072 -0.3762 10 7 7.5791 4.2984 -0.4953 11 6 8.0011 3.6663 -1.7518 12 6 9.5170 3.8047 -1.9098 13 6 10.2123 3.1352 -0.7212 14 6 9.7191 3.7792 0.5775 15 1 9.9900 4.8349 0.5859 16 6 10.3550 3.0870 1.7554 17 1 9.7360 2.5997 2.4941 18 6 11.7271 3.0758 1.8899 19 7 12.4810 3.6696 0.9906 20 14 12.5154 2.2184 3.3504 21 1 12.1442 0.7806 3.3397 22 1 13.9920 2.3496 3.2635 23 1 12.0365 2.8439 4.6093 24 6 8.1973 3.6415 0.6634 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 5.1695 0.8327 1.3086 33 1 3.7158 1.4227 2.1499 34 1 3.7161 -0.1907 1.3980 35 1 3.7914 3.4462 0.7601 36 1 3.6458 3.3429 -1.0109 37 1 5.8938 2.3035 -1.1350 38 1 6.0392 2.4068 0.6360 39 1 5.8263 4.8744 0.5088 40 1 5.6807 4.7703 -1.2621 41 1 7.5025 4.1544 -2.5893 42 1 7.7326 2.6101 -1.7349 43 1 9.8320 3.3218 -2.8349 44 1 9.7846 4.8609 -1.9412 45 1 9.9760 2.0713 -0.7130 46 1 11.2907 3.2681 -0.8081 47 1 13.4463 3.6619 1.0855 48 1 7.9280 2.5853 0.6687 49 1 7.8414 4.1118 1.5800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599470034.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:27 Heat of formation + Delta-G solvation = -48.441212 kcal Electronic energy + Delta-G solvation = -21157.443952 eV Core-core repulsion = 18310.305893 eV Total energy + Delta-G solvation = -2847.138059 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -38.70310 -37.43110 -34.57081 -33.17772 -31.85357 -29.85914 -29.52644 -26.86172 -25.60509 -24.89979 -23.31998 -21.58400 -21.29200 -20.57306 -19.96740 -18.21197 -16.35438 -15.72928 -15.26636 -14.87659 -14.62721 -14.46574 -14.09221 -13.82068 -13.57503 -13.40459 -12.87123 -12.62804 -12.44486 -12.32769 -12.05254 -11.89815 -11.66125 -11.58361 -11.51497 -11.28479 -11.02564 -10.92113 -10.79922 -10.63961 -10.60171 -10.52839 -10.35956 -10.21409 -9.93761 -9.75182 -9.40736 -8.97477 -8.66123 -8.26099 -7.50861 -5.93627 -3.99744 3.34223 3.38854 3.41267 4.43491 4.51040 4.70196 4.70677 4.81994 4.96256 5.10398 5.19983 5.26271 5.36126 5.43546 5.50885 5.58095 5.59320 5.70906 5.71789 5.74597 5.78865 5.85034 5.86864 5.94415 5.99111 6.03778 6.07904 6.13381 6.14125 6.19828 6.30432 6.34595 6.46190 6.48993 6.55939 6.60514 6.78932 6.82544 7.04103 7.27514 7.46331 7.74717 7.79812 7.91539 8.13925 8.22464 8.52987 9.04354 9.64232 11.12307 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.003715 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.220470 B = 7534.660549 C = 8412.945903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.127 4.127 3 C -0.114 4.114 4 C -0.092 4.092 5 H 0.066 0.934 6 C -0.150 4.150 7 C -0.108 4.108 8 C -0.160 4.160 9 C 0.056 3.944 10 N -0.538 5.538 11 C 0.062 3.938 12 C -0.118 4.118 13 C -0.110 4.110 14 C 0.054 3.946 15 H 0.032 0.968 16 C -0.514 4.514 17 H 0.052 0.948 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.288 1.288 23 H -0.277 1.277 24 C 0.067 3.933 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.052 0.948 34 H 0.052 0.948 35 H 0.060 0.940 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.024 0.976 43 H 0.044 0.956 44 H 0.059 0.941 45 H 0.028 0.972 46 H 0.090 0.910 47 H 0.260 0.740 48 H 0.022 0.978 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.839 -4.058 -4.070 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.152 4.152 4 C -0.111 4.111 5 H 0.085 0.915 6 C -0.208 4.208 7 C -0.147 4.147 8 C -0.199 4.199 9 C -0.073 4.073 10 N -0.261 5.261 11 C -0.066 4.066 12 C -0.156 4.156 13 C -0.148 4.148 14 C 0.035 3.965 15 H 0.051 0.949 16 C -0.553 4.553 17 H 0.070 0.930 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.718 3.282 21 H -0.204 1.204 22 H -0.213 1.213 23 H -0.203 1.203 24 C -0.060 4.060 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.078 0.922 45 H 0.047 0.953 46 H 0.108 0.892 47 H 0.070 0.930 48 H 0.040 0.960 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.465 -3.518 -4.119 19.243 hybrid contribution 0.177 -1.387 0.783 1.603 sum -18.288 -4.905 -3.336 19.226 Atomic orbital electron populations 1.21782 0.96191 1.01364 1.01659 1.21594 0.95495 0.97306 1.02085 1.21666 0.95240 0.96482 1.01789 1.21172 0.94688 0.96788 0.98439 0.91515 1.21928 1.01596 1.00255 0.96975 1.21562 0.95708 0.95879 1.01507 1.22340 0.95370 0.99685 1.02520 1.22185 0.88810 0.94809 1.01455 1.62220 1.05479 1.55184 1.03233 1.22017 0.97125 0.95985 0.91447 1.21686 0.93617 1.01316 0.98988 1.21643 1.02627 0.96787 0.93759 1.18662 0.87546 0.97144 0.93122 0.94937 1.21121 0.91495 1.34799 1.07871 0.92964 1.24935 0.97356 0.95438 0.96115 1.69887 1.04725 1.43714 1.34448 0.86705 0.78149 0.80093 0.83298 1.20400 1.21334 1.20314 1.22295 0.98225 0.94860 0.90594 0.92907 0.92990 0.92852 0.92214 0.91789 0.92115 0.92230 0.92192 0.92845 0.92908 0.92123 0.92381 0.92250 0.91083 0.91388 0.91879 0.92701 0.95737 0.93694 0.92191 0.95274 0.89186 0.93043 0.95974 0.92552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.13 -1.04 5.69 -26.73 -0.15 -1.20 16 3 C -0.11 -1.01 4.68 -26.74 -0.13 -1.13 16 4 C -0.09 -0.95 2.39 -90.62 -0.22 -1.16 16 5 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 6 C -0.15 -1.61 8.70 37.16 0.32 -1.29 16 7 C -0.11 -1.20 4.68 -26.73 -0.13 -1.32 16 8 C -0.16 -2.19 4.27 -26.73 -0.11 -2.31 16 9 C 0.06 0.85 5.36 -3.83 -0.02 0.83 16 10 N -0.54 -10.16 4.86 -234.67 -1.14 -11.30 16 11 C 0.06 1.12 5.05 -3.83 -0.02 1.10 16 12 C -0.12 -2.37 6.09 -26.65 -0.16 -2.54 16 13 C -0.11 -2.66 5.02 -26.61 -0.13 -2.79 16 14 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 15 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 16 C -0.51 -14.26 8.57 -34.44 -0.30 -14.56 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 19 N -0.89 -25.66 11.35 55.43 0.63 -25.03 16 20 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C 0.07 1.45 4.06 -3.83 -0.02 1.43 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.53 6.56 -51.93 -0.34 0.19 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.73 6.57 -51.93 -0.34 0.39 16 33 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.05 0.52 6.56 -51.93 -0.34 0.17 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.85 6.68 -51.93 -0.35 0.50 16 38 H 0.07 1.09 4.93 -51.93 -0.26 0.83 16 39 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 41 H 0.05 0.88 8.06 -51.93 -0.42 0.46 16 42 H 0.02 0.44 6.76 -51.93 -0.35 0.09 16 43 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 2.42 6.15 -51.93 -0.32 2.10 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.02 0.48 6.61 -51.93 -0.34 0.14 16 49 H 0.06 1.22 8.12 -51.93 -0.42 0.79 16 LS Contribution 362.36 15.07 5.46 5.46 Total: -1.00 -27.89 362.36 -10.84 -38.73 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -9.78 Total: -1.44 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -0.99 Total: -22.84 kcal Atomic # 7 Polarization: -35.82 SS G_CDS: -0.51 Total: -36.33 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -27.89 -10.84 -38.73 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599470034.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.714 kcal (2) G-P(sol) polarization free energy of solvation -27.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds