Wall clock time and date at job start Mon Mar 30 2020 07:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47304 * 2 1 4 4 C 1.52997 * 109.47384 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47208 * 54.99879 * 4 3 2 6 6 C 1.53001 * 109.47094 * 294.99673 * 4 3 2 7 7 C 1.53008 * 109.47266 * 174.99961 * 4 3 2 8 8 C 1.52999 * 109.46965 * 184.99915 * 7 4 3 9 9 C 1.52999 * 109.46926 * 179.97438 * 8 7 4 10 10 N 1.46899 * 109.47036 * 179.97438 * 9 8 7 11 11 C 1.46847 * 110.99862 * 66.05037 * 10 9 8 12 12 C 1.53044 * 109.51335 * 174.15436 * 11 10 9 13 13 C 1.53119 * 109.27589 * 59.18419 * 12 11 10 14 14 C 1.53120 * 109.16202 * 302.34077 * 13 12 11 15 15 H 1.08996 * 109.50004 * 297.72216 * 14 13 12 16 16 C 1.50697 * 109.50290 * 177.63586 * 14 13 12 17 17 H 1.07997 * 120.00495 * 240.00286 * 16 14 13 18 18 C 1.37880 * 119.99487 * 60.00267 * 16 14 13 19 19 N 1.31518 * 120.00428 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99610 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.46967 * 60.00324 * 20 18 16 22 22 H 1.48503 * 109.46839 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47286 * 300.00184 * 20 18 16 24 24 C 1.46847 * 110.99299 * 301.84195 * 10 9 8 25 25 H 1.09000 * 109.46586 * 60.00357 * 1 2 3 26 26 H 1.09002 * 109.46934 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.47362 * 300.00340 * 1 2 3 28 28 H 1.08991 * 109.47362 * 239.99660 * 2 1 3 29 29 H 1.09000 * 109.46586 * 119.99643 * 2 1 3 30 30 H 1.09004 * 109.47446 * 59.99465 * 3 2 1 31 31 H 1.08999 * 109.47524 * 299.99950 * 3 2 1 32 32 H 1.08996 * 109.47070 * 179.97438 * 6 4 3 33 33 H 1.09000 * 109.47262 * 300.00173 * 6 4 3 34 34 H 1.09002 * 109.46994 * 59.99833 * 6 4 3 35 35 H 1.08999 * 109.46834 * 64.99917 * 7 4 3 36 36 H 1.08996 * 109.46703 * 305.00392 * 7 4 3 37 37 H 1.08999 * 109.47343 * 60.00314 * 8 7 4 38 38 H 1.08997 * 109.47101 * 300.00074 * 8 7 4 39 39 H 1.09004 * 109.47161 * 60.00228 * 9 8 7 40 40 H 1.08996 * 109.47358 * 300.00580 * 9 8 7 41 41 H 1.09002 * 109.46448 * 54.14158 * 11 10 9 42 42 H 1.08994 * 109.45958 * 294.16523 * 11 10 9 43 43 H 1.09000 * 109.49745 * 179.12223 * 12 11 10 44 44 H 1.08999 * 109.49729 * 299.20033 * 12 11 10 45 45 H 1.08993 * 109.52284 * 62.25342 * 13 12 11 46 46 H 1.09003 * 109.51690 * 182.37761 * 13 12 11 47 47 H 0.97001 * 119.99568 * 179.97438 * 19 18 16 48 48 H 1.09005 * 109.46836 * 65.83946 * 24 10 9 49 49 H 1.08995 * 109.45748 * 305.85482 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9338 0.8529 -0.8409 6 6 4.0795 0.8331 1.3083 7 6 4.0801 2.8795 -0.1251 8 6 5.6050 2.8703 -0.2498 9 6 6.1150 4.3072 -0.3762 10 7 7.5791 4.2984 -0.4953 11 6 8.0011 3.6663 -1.7518 12 6 9.5170 3.8047 -1.9098 13 6 10.2123 3.1352 -0.7212 14 6 9.7191 3.7792 0.5775 15 1 9.9900 4.8349 0.5859 16 6 10.3550 3.0870 1.7554 17 1 9.7360 2.5997 2.4941 18 6 11.7271 3.0758 1.8899 19 7 12.4810 3.6696 0.9906 20 14 12.5154 2.2184 3.3504 21 1 12.1442 0.7806 3.3397 22 1 13.9920 2.3496 3.2635 23 1 12.0365 2.8439 4.6093 24 6 8.1973 3.6415 0.6634 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6768 1.9563 -0.8900 32 1 5.1695 0.8327 1.3086 33 1 3.7158 1.4227 2.1499 34 1 3.7161 -0.1907 1.3980 35 1 3.7914 3.4462 0.7601 36 1 3.6458 3.3429 -1.0109 37 1 5.8938 2.3035 -1.1350 38 1 6.0392 2.4068 0.6360 39 1 5.8263 4.8744 0.5088 40 1 5.6807 4.7703 -1.2621 41 1 7.5025 4.1544 -2.5893 42 1 7.7326 2.6101 -1.7349 43 1 9.8320 3.3218 -2.8349 44 1 9.7846 4.8609 -1.9412 45 1 9.9760 2.0713 -0.7130 46 1 11.2907 3.2681 -0.8081 47 1 13.4463 3.6619 1.0855 48 1 7.9280 2.5853 0.6687 49 1 7.8414 4.1118 1.5800 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599470034.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:21:26 Heat of formation + Delta-G solvation = -61.878018 kcal Electronic energy + Delta-G solvation = -21158.026616 eV Core-core repulsion = 18310.305893 eV Total energy + Delta-G solvation = -2847.720723 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.16324 -38.39698 -36.05129 -34.55238 -33.32157 -31.68005 -30.73210 -27.62721 -26.96158 -26.75702 -24.54306 -23.20565 -22.47992 -21.81194 -20.78674 -19.91000 -18.42148 -16.87648 -16.49072 -16.21804 -16.06759 -15.62031 -15.42141 -15.10224 -14.74383 -14.53214 -14.42579 -14.14019 -13.87497 -13.42917 -13.23051 -13.07341 -12.87479 -12.81187 -12.67298 -12.60253 -12.55296 -12.40924 -12.14493 -11.94628 -11.77508 -11.71077 -11.43595 -11.41546 -11.32853 -11.18601 -11.09913 -10.81781 -10.65464 -10.37285 -8.99871 -8.07748 -6.22188 1.40777 1.42318 1.49929 2.42699 3.18732 3.21544 3.72499 3.93258 4.01608 4.14084 4.19823 4.26050 4.31764 4.36981 4.41298 4.46884 4.58088 4.63582 4.66407 4.68788 4.78140 4.83859 4.87425 4.90688 4.93514 4.96152 5.00479 5.06027 5.08071 5.14155 5.17292 5.20175 5.25148 5.28492 5.33544 5.36824 5.41861 5.47398 5.53401 5.58622 5.59914 5.63433 5.97981 6.14276 6.22948 6.43560 6.47931 6.90692 7.45576 8.96759 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.022090 B = 0.003715 C = 0.003327 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.220470 B = 7534.660549 C = 8412.945903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C -0.109 4.109 4 C -0.090 4.090 5 H 0.062 0.938 6 C -0.149 4.149 7 C -0.102 4.102 8 C -0.151 4.151 9 C 0.057 3.943 10 N -0.552 5.552 11 C 0.067 3.933 12 C -0.112 4.112 13 C -0.103 4.103 14 C 0.051 3.949 15 H -0.007 1.007 16 C -0.537 4.537 17 H 0.050 0.950 18 C 0.013 3.987 19 N -0.916 5.916 20 Si 0.954 3.046 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.271 1.271 24 C 0.085 3.915 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.072 0.928 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.028 0.972 43 H 0.068 0.932 44 H 0.049 0.951 45 H 0.021 0.979 46 H 0.057 0.943 47 H 0.260 0.740 48 H 0.019 0.981 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.781 -4.547 -4.525 21.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.147 4.147 4 C -0.108 4.108 5 H 0.080 0.920 6 C -0.207 4.207 7 C -0.140 4.140 8 C -0.190 4.190 9 C -0.071 4.071 10 N -0.275 5.275 11 C -0.061 4.061 12 C -0.150 4.150 13 C -0.142 4.142 14 C 0.033 3.967 15 H 0.011 0.989 16 C -0.576 4.576 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.555 5.555 20 Si 0.779 3.221 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.196 1.196 24 C -0.042 4.042 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.104 0.896 41 H 0.105 0.895 42 H 0.046 0.954 43 H 0.087 0.913 44 H 0.067 0.933 45 H 0.040 0.960 46 H 0.075 0.925 47 H 0.069 0.931 48 H 0.037 0.963 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -20.429 -4.006 -4.578 21.315 hybrid contribution 0.786 -1.208 0.913 1.706 sum -19.643 -5.214 -3.665 20.651 Atomic orbital electron populations 1.21772 0.95373 1.01820 1.01931 1.21590 0.96229 0.96832 1.01868 1.21616 0.93896 0.96990 1.02162 1.21139 0.95785 0.96098 0.97788 0.91954 1.21915 1.00266 1.00957 0.97523 1.21508 0.93610 0.96574 1.02270 1.22217 0.97208 0.98294 1.01306 1.22274 0.86249 0.95918 1.02653 1.62145 1.07941 1.54933 1.02481 1.22009 0.95493 0.96619 0.91967 1.21606 0.95122 1.00269 0.98020 1.21452 1.01009 0.96542 0.95170 1.18597 0.90384 0.94441 0.93326 0.98888 1.21499 0.92138 1.35148 1.08780 0.93154 1.25734 0.97912 0.96090 0.98792 1.70036 1.04858 1.44635 1.36005 0.85683 0.77215 0.79179 0.80006 1.19639 1.20858 1.19630 1.21909 0.95645 0.94871 0.91813 0.92537 0.92502 0.92678 0.92348 0.92131 0.91966 0.91587 0.94171 0.92713 0.92115 0.91888 0.90981 0.92652 0.93160 0.91254 0.89607 0.89525 0.95385 0.91316 0.93251 0.96042 0.92464 0.93055 0.96254 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.91 71.98 0.71 -1.17 16 2 C -0.13 -1.85 5.69 30.59 0.17 -1.68 16 3 C -0.11 -1.68 4.68 30.59 0.14 -1.54 16 4 C -0.09 -1.67 2.39 -10.79 -0.03 -1.70 16 5 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 6 C -0.15 -3.07 8.70 71.98 0.63 -2.45 16 7 C -0.10 -2.01 4.68 30.60 0.14 -1.87 16 8 C -0.15 -3.90 4.27 30.59 0.13 -3.77 16 9 C 0.06 1.60 5.36 86.30 0.46 2.06 16 10 N -0.55 -20.25 4.86 -896.35 -4.35 -24.61 16 11 C 0.07 2.28 5.05 86.33 0.44 2.71 16 12 C -0.11 -4.44 6.09 30.65 0.19 -4.26 16 13 C -0.10 -5.12 5.02 30.67 0.15 -4.97 16 14 C 0.05 2.70 2.26 -11.49 -0.03 2.68 16 15 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 16 C -0.54 -30.60 8.57 25.60 0.22 -30.38 16 17 H 0.05 2.81 7.74 -2.91 -0.02 2.78 16 18 C 0.01 0.76 5.30 84.65 0.45 1.21 16 19 N -0.92 -54.36 11.35 21.45 0.24 -54.12 16 20 Si 0.95 44.48 29.54 68.60 2.03 46.50 16 21 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 C 0.09 3.72 4.06 86.33 0.35 4.07 16 25 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.06 0.91 6.56 -2.39 -0.02 0.90 16 30 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.97 6.57 -2.39 -0.02 0.96 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.06 1.13 6.56 -2.39 -0.02 1.11 16 35 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.05 1.47 6.68 -2.39 -0.02 1.46 16 38 H 0.05 1.51 4.93 -2.39 -0.01 1.50 16 39 H 0.07 1.94 8.14 -2.38 -0.02 1.92 16 40 H 0.09 2.07 8.06 -2.39 -0.02 2.05 16 41 H 0.09 2.46 8.06 -2.39 -0.02 2.44 16 42 H 0.03 0.95 6.76 -2.39 -0.02 0.93 16 43 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 44 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.06 3.19 6.15 -2.39 -0.01 3.18 16 47 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 48 H 0.02 0.85 6.61 -2.38 -0.02 0.83 16 49 H 0.05 2.20 8.12 -2.39 -0.02 2.18 16 Total: -1.00 -61.05 362.36 2.91 -58.15 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.86 Total: 15.13 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 4.14 Total: -41.05 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -4.11 Total: -78.72 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Total: -61.05 2.91 -58.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599470034.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.733 kcal (2) G-P(sol) polarization free energy of solvation -61.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds