Wall clock time and date at job start Mon Mar 30 2020 07:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47600 * 2 1 4 4 H 1.08998 * 109.47362 * 306.04399 * 3 2 1 5 5 C 1.50699 * 109.47629 * 186.03329 * 3 2 1 6 6 H 1.07994 * 120.00419 * 244.90389 * 5 3 2 7 7 C 1.37883 * 119.99486 * 64.90594 * 5 3 2 8 8 N 1.31508 * 119.99764 * 193.18329 * 7 5 3 9 9 Si 1.86797 * 119.99936 * 13.17779 * 7 5 3 10 10 H 1.48507 * 109.46868 * 93.01770 * 9 7 5 11 11 H 1.48500 * 109.47101 * 213.01480 * 9 7 5 12 12 H 1.48497 * 109.47539 * 333.01847 * 9 7 5 13 13 N 1.46906 * 109.46501 * 66.03484 * 3 2 1 14 14 C 1.46905 * 110.99758 * 212.20214 * 13 3 2 15 15 H 1.08995 * 108.78815 * 316.40149 * 14 13 3 16 16 C 1.54069 * 108.72325 * 74.76163 * 14 13 3 17 17 C 1.50472 * 112.49416 * 162.51383 * 16 14 13 18 18 C 1.54234 * 108.51762 * 265.84249 * 17 16 14 19 19 C 1.45543 * 112.40803 * 79.99611 * 18 17 16 20 20 C 1.54245 * 112.40503 * 298.06474 * 19 18 17 21 21 C 1.50467 * 108.52556 * 79.98018 * 20 19 18 22 22 H 1.08998 * 108.87706 * 26.52873 * 21 20 19 23 23 C 1.53001 * 108.87791 * 145.07698 * 21 20 19 24 24 C 1.53004 * 109.47204 * 179.31265 * 23 21 20 25 25 C 1.52996 * 109.47060 * 299.30888 * 23 21 20 26 26 H 1.09006 * 109.46880 * 184.50011 * 1 2 3 27 27 H 1.08998 * 109.46831 * 304.49599 * 1 2 3 28 28 H 1.08994 * 109.47319 * 64.50207 * 1 2 3 29 29 H 1.09009 * 109.47036 * 240.00422 * 2 1 3 30 30 H 1.09002 * 109.47354 * 120.00537 * 2 1 3 31 31 H 0.97002 * 120.00285 * 180.02562 * 8 7 5 32 32 H 1.00897 * 111.00366 * 336.15934 * 13 3 2 33 33 H 1.09000 * 108.87214 * 283.29350 * 16 14 13 34 34 H 1.09001 * 108.87442 * 41.83616 * 16 14 13 35 35 H 1.08997 * 109.63138 * 25.55726 * 17 16 14 36 36 H 1.09005 * 109.62378 * 146.13984 * 17 16 14 37 37 H 1.08998 * 108.89669 * 200.74893 * 18 17 16 38 38 H 1.09000 * 108.90071 * 319.24093 * 18 17 16 39 39 H 1.08999 * 108.89877 * 177.30799 * 19 18 17 40 40 H 1.08998 * 108.89560 * 58.80928 * 19 18 17 41 41 H 1.09000 * 109.62515 * 320.27305 * 20 19 18 42 42 H 1.09000 * 109.62877 * 199.69676 * 20 19 18 43 43 H 1.08994 * 109.47472 * 59.31057 * 23 21 20 44 44 H 1.08998 * 109.47293 * 65.66585 * 24 23 21 45 45 H 1.08992 * 109.47255 * 185.66893 * 24 23 21 46 46 H 1.09003 * 109.47070 * 305.67169 * 24 23 21 47 47 H 1.09000 * 109.46964 * 66.57289 * 25 23 21 48 48 H 1.09001 * 109.47737 * 186.57608 * 25 23 21 49 49 H 1.09006 * 109.47552 * 306.57574 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5912 1.9866 -0.8309 5 6 3.5397 1.4450 -0.1493 6 1 4.1617 1.8127 0.6533 7 6 4.1175 0.9780 -1.3108 8 7 5.4094 0.7354 -1.3511 9 14 3.0654 0.6898 -2.8271 10 1 3.0803 1.9065 -3.6785 11 1 3.6088 -0.4588 -3.5957 12 1 1.6707 0.3927 -2.4128 13 7 1.6729 2.0915 1.2657 14 6 1.4246 3.5260 1.0690 15 1 2.2032 3.9317 0.4230 16 6 0.0609 3.7010 0.3737 17 6 -0.4752 5.1012 0.5019 18 6 -1.4139 5.1562 1.7245 19 6 -0.6849 5.2715 2.9789 20 6 0.2334 4.0598 3.2388 21 6 1.4937 4.2341 2.4356 22 1 1.6630 5.2983 2.2714 23 6 2.6701 3.6631 3.2300 24 6 3.9573 3.8180 2.4176 25 6 2.8076 4.4200 4.5525 26 1 -0.3633 -1.0246 0.0806 27 1 -0.3633 0.5820 0.8470 28 1 -0.3633 0.4424 -0.9275 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 5.8161 0.4072 -2.1683 32 1 0.8737 1.6403 1.6850 33 1 0.1709 3.4609 -0.6838 34 1 -0.6536 3.0091 0.8195 35 1 0.3509 5.7981 0.6428 36 1 -1.0306 5.3644 -0.3983 37 1 -2.0775 6.0148 1.6217 38 1 -2.0160 4.2479 1.7485 39 1 -1.4006 5.3539 3.7969 40 1 -0.0768 6.1758 2.9520 41 1 -0.2726 3.1445 2.9320 42 1 0.4794 4.0076 4.2994 43 1 2.4932 2.6069 3.4326 44 1 4.1883 4.8768 2.3011 45 1 4.7770 3.3224 2.9376 46 1 3.8236 3.3651 1.4351 47 1 1.9405 4.2149 5.1803 48 1 3.7127 4.0942 5.0652 49 1 2.8676 5.4902 4.3542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691154522.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:36 Heat of formation + Delta-G solvation = -26.844113 kcal Electronic energy + Delta-G solvation = -23050.772894 eV Core-core repulsion = 20204.571355 eV Total energy + Delta-G solvation = -2846.201539 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.62582 -36.15955 -35.16817 -32.66538 -31.80038 -30.57829 -28.92251 -26.83352 -26.60153 -24.15515 -23.38600 -22.35554 -20.48292 -20.10330 -19.64887 -18.24718 -16.73553 -15.80283 -14.97166 -14.81966 -14.51061 -14.00910 -13.87921 -13.41767 -13.38470 -13.21345 -12.81187 -12.63239 -12.45299 -12.01058 -11.80806 -11.75162 -11.66655 -11.48980 -11.24299 -10.94763 -10.78700 -10.74915 -10.53942 -10.48603 -10.39047 -10.20649 -10.05473 -9.88484 -9.68495 -9.58686 -9.53255 -9.31518 -8.94527 -8.41539 -7.15326 -6.00024 -3.92471 3.29528 3.39336 3.42005 4.47460 4.79858 4.86902 5.03204 5.22160 5.30181 5.33259 5.36519 5.52048 5.59515 5.63745 5.69527 5.75411 5.84459 5.90131 5.91410 5.98491 6.04797 6.06980 6.16310 6.23280 6.28231 6.31684 6.33690 6.37151 6.43004 6.48786 6.52172 6.56207 6.59676 6.60532 6.64182 6.72237 6.83346 6.89691 6.97021 7.04360 7.22387 7.30112 7.45577 7.86345 8.10785 8.39993 8.84366 9.19442 9.66980 11.12759 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.007331 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.709099 B = 3818.258495 C = 4537.944345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.132 4.132 3 C 0.192 3.808 4 H -0.001 1.001 5 C -0.498 4.498 6 H 0.090 0.910 7 C 0.070 3.930 8 N -0.897 5.897 9 Si 0.855 3.145 10 H -0.285 1.285 11 H -0.290 1.290 12 H -0.253 1.253 13 N -0.663 5.663 14 C 0.100 3.900 15 H 0.081 0.919 16 C -0.148 4.148 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.116 4.116 20 C -0.115 4.115 21 C -0.066 4.066 22 H 0.058 0.942 23 C -0.073 4.073 24 C -0.154 4.154 25 C -0.150 4.150 26 H 0.041 0.959 27 H 0.046 0.954 28 H 0.042 0.958 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.260 0.740 32 H 0.316 0.684 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.065 0.935 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.060 0.940 42 H 0.065 0.935 43 H 0.083 0.917 44 H 0.029 0.971 45 H 0.039 0.961 46 H 0.099 0.901 47 H 0.048 0.952 48 H 0.047 0.953 49 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.045 7.232 7.404 15.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.170 4.170 3 C 0.083 3.917 4 H 0.017 0.983 5 C -0.536 4.536 6 H 0.107 0.893 7 C -0.131 4.131 8 N -0.535 5.535 9 Si 0.682 3.318 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.177 1.177 13 N -0.293 5.293 14 C -0.011 4.011 15 H 0.099 0.901 16 C -0.188 4.188 17 C -0.151 4.151 18 C -0.151 4.151 19 C -0.154 4.154 20 C -0.152 4.152 21 C -0.085 4.085 22 H 0.076 0.924 23 C -0.091 4.091 24 C -0.211 4.211 25 C -0.207 4.207 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.135 0.865 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.084 0.916 36 H 0.072 0.928 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.101 0.899 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.118 0.882 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.219 7.232 7.487 15.304 hybrid contribution -1.340 -0.228 -1.558 2.068 sum -12.559 7.004 5.929 15.554 Atomic orbital electron populations 1.21921 0.98762 1.00102 1.00397 1.22191 0.92319 1.00633 1.01897 1.19546 0.96570 0.89166 0.86416 0.98301 1.21181 0.89407 1.40865 1.02130 0.89252 1.24924 0.94598 0.95132 0.98462 1.69953 1.10775 1.45380 1.27428 0.87366 0.82363 0.77726 0.84295 1.21117 1.21673 1.17744 1.60779 1.40233 1.00872 1.27386 1.21987 0.94118 0.90386 0.94645 0.90105 1.22171 0.98906 0.96514 1.01200 1.21275 0.98826 0.97929 0.97030 1.20467 0.98125 1.01201 0.95347 1.20481 0.98780 0.99029 0.97079 1.21513 0.95984 0.97566 1.00138 1.20969 0.94412 0.98649 0.94461 0.92396 1.20926 0.94765 1.00454 0.93001 1.22033 0.95960 0.99415 1.03654 1.22013 1.00502 0.99910 0.98309 0.93991 0.93534 0.93907 0.92242 0.92053 0.92974 0.86537 0.92634 0.92655 0.91632 0.92811 0.93168 0.92619 0.93152 0.92481 0.92154 0.91611 0.89858 0.95223 0.94159 0.88219 0.93340 0.93429 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.61 9.82 37.16 0.36 -2.25 16 2 C -0.13 -2.73 4.68 -26.73 -0.13 -2.86 16 3 C 0.19 4.20 1.30 -68.86 -0.09 4.11 16 4 H 0.00 -0.01 5.29 -51.93 -0.27 -0.29 16 5 C -0.50 -13.25 8.68 -34.44 -0.30 -13.55 16 6 H 0.09 2.59 6.07 -52.49 -0.32 2.27 16 7 C 0.07 1.96 5.35 -17.82 -0.10 1.86 16 8 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 9 Si 0.85 20.93 25.75 -169.99 -4.38 16.55 16 10 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 12 H -0.25 -5.80 5.38 56.52 0.30 -5.49 16 13 N -0.66 -12.27 4.02 -99.78 -0.40 -12.67 16 14 C 0.10 1.65 1.22 -66.59 -0.08 1.57 16 15 H 0.08 1.59 6.99 -51.93 -0.36 1.22 16 16 C -0.15 -2.22 4.43 -27.44 -0.12 -2.34 16 17 C -0.11 -1.43 5.61 -27.35 -0.15 -1.58 16 18 C -0.11 -1.27 5.26 -29.60 -0.16 -1.43 16 19 C -0.12 -1.28 5.26 -29.60 -0.16 -1.44 16 20 C -0.11 -1.42 4.97 -27.34 -0.14 -1.56 16 21 C -0.07 -0.95 1.17 -91.32 -0.11 -1.05 16 22 H 0.06 0.83 6.63 -51.93 -0.34 0.49 16 23 C -0.07 -1.13 2.01 -90.62 -0.18 -1.31 16 24 C -0.15 -2.78 8.87 37.16 0.33 -2.45 16 25 C -0.15 -1.98 8.79 37.16 0.33 -1.65 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.71 6.44 -51.93 -0.33 0.38 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.33 4.81 -51.92 -0.25 1.08 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 32 H 0.32 5.41 5.67 -39.29 -0.22 5.19 16 33 H 0.05 0.92 7.20 -51.93 -0.37 0.55 16 34 H 0.05 0.80 6.30 -51.93 -0.33 0.47 16 35 H 0.06 0.85 6.97 -51.93 -0.36 0.49 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.63 7.47 -51.93 -0.39 0.24 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.63 7.47 -51.93 -0.39 0.25 16 41 H 0.06 0.78 6.49 -51.93 -0.34 0.45 16 42 H 0.07 0.78 5.56 -51.93 -0.29 0.49 16 43 H 0.08 1.43 7.34 -51.93 -0.38 1.04 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 46 H 0.10 2.13 3.26 -51.93 -0.17 1.96 16 47 H 0.05 0.57 6.25 -51.93 -0.32 0.25 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 336.67 15.07 5.07 5.07 Total: -1.00 -27.47 336.67 -8.52 -35.99 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -8.91 Total: 7.18 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: -0.68 Total: -25.91 kcal Atomic # 7 Polarization: -39.25 SS G_CDS: 0.37 Total: -38.88 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.38 Total: 16.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.47 -8.52 -35.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691154522.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.142 kcal (2) G-P(sol) polarization free energy of solvation -27.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds