Wall clock time and date at job start Mon Mar 30 2020 07:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47600 * 2 1 4 4 H 1.08998 * 109.47362 * 306.04399 * 3 2 1 5 5 C 1.50699 * 109.47629 * 186.03329 * 3 2 1 6 6 H 1.07994 * 120.00419 * 244.90389 * 5 3 2 7 7 C 1.37883 * 119.99486 * 64.90594 * 5 3 2 8 8 N 1.31508 * 119.99764 * 193.18329 * 7 5 3 9 9 Si 1.86797 * 119.99936 * 13.17779 * 7 5 3 10 10 H 1.48507 * 109.46868 * 93.01770 * 9 7 5 11 11 H 1.48500 * 109.47101 * 213.01480 * 9 7 5 12 12 H 1.48497 * 109.47539 * 333.01847 * 9 7 5 13 13 N 1.46906 * 109.46501 * 66.03484 * 3 2 1 14 14 C 1.46905 * 110.99758 * 212.20214 * 13 3 2 15 15 H 1.08995 * 108.78815 * 316.40149 * 14 13 3 16 16 C 1.54069 * 108.72325 * 74.76163 * 14 13 3 17 17 C 1.50472 * 112.49416 * 162.51383 * 16 14 13 18 18 C 1.54234 * 108.51762 * 265.84249 * 17 16 14 19 19 C 1.45543 * 112.40803 * 79.99611 * 18 17 16 20 20 C 1.54245 * 112.40503 * 298.06474 * 19 18 17 21 21 C 1.50467 * 108.52556 * 79.98018 * 20 19 18 22 22 H 1.08998 * 108.87706 * 26.52873 * 21 20 19 23 23 C 1.53001 * 108.87791 * 145.07698 * 21 20 19 24 24 C 1.53004 * 109.47204 * 179.31265 * 23 21 20 25 25 C 1.52996 * 109.47060 * 299.30888 * 23 21 20 26 26 H 1.09006 * 109.46880 * 184.50011 * 1 2 3 27 27 H 1.08998 * 109.46831 * 304.49599 * 1 2 3 28 28 H 1.08994 * 109.47319 * 64.50207 * 1 2 3 29 29 H 1.09009 * 109.47036 * 240.00422 * 2 1 3 30 30 H 1.09002 * 109.47354 * 120.00537 * 2 1 3 31 31 H 0.97002 * 120.00285 * 180.02562 * 8 7 5 32 32 H 1.00897 * 111.00366 * 336.15934 * 13 3 2 33 33 H 1.09000 * 108.87214 * 283.29350 * 16 14 13 34 34 H 1.09001 * 108.87442 * 41.83616 * 16 14 13 35 35 H 1.08997 * 109.63138 * 25.55726 * 17 16 14 36 36 H 1.09005 * 109.62378 * 146.13984 * 17 16 14 37 37 H 1.08998 * 108.89669 * 200.74893 * 18 17 16 38 38 H 1.09000 * 108.90071 * 319.24093 * 18 17 16 39 39 H 1.08999 * 108.89877 * 177.30799 * 19 18 17 40 40 H 1.08998 * 108.89560 * 58.80928 * 19 18 17 41 41 H 1.09000 * 109.62515 * 320.27305 * 20 19 18 42 42 H 1.09000 * 109.62877 * 199.69676 * 20 19 18 43 43 H 1.08994 * 109.47472 * 59.31057 * 23 21 20 44 44 H 1.08998 * 109.47293 * 65.66585 * 24 23 21 45 45 H 1.08992 * 109.47255 * 185.66893 * 24 23 21 46 46 H 1.09003 * 109.47070 * 305.67169 * 24 23 21 47 47 H 1.09000 * 109.46964 * 66.57289 * 25 23 21 48 48 H 1.09001 * 109.47737 * 186.57608 * 25 23 21 49 49 H 1.09006 * 109.47552 * 306.57574 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5912 1.9866 -0.8309 5 6 3.5397 1.4450 -0.1493 6 1 4.1617 1.8127 0.6533 7 6 4.1175 0.9780 -1.3108 8 7 5.4094 0.7354 -1.3511 9 14 3.0654 0.6898 -2.8271 10 1 3.0803 1.9065 -3.6785 11 1 3.6088 -0.4588 -3.5957 12 1 1.6707 0.3927 -2.4128 13 7 1.6729 2.0915 1.2657 14 6 1.4246 3.5260 1.0690 15 1 2.2032 3.9317 0.4230 16 6 0.0609 3.7010 0.3737 17 6 -0.4752 5.1012 0.5019 18 6 -1.4139 5.1562 1.7245 19 6 -0.6849 5.2715 2.9789 20 6 0.2334 4.0598 3.2388 21 6 1.4937 4.2341 2.4356 22 1 1.6630 5.2983 2.2714 23 6 2.6701 3.6631 3.2300 24 6 3.9573 3.8180 2.4176 25 6 2.8076 4.4200 4.5525 26 1 -0.3633 -1.0246 0.0806 27 1 -0.3633 0.5820 0.8470 28 1 -0.3633 0.4424 -0.9275 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 5.8161 0.4072 -2.1683 32 1 0.8737 1.6403 1.6850 33 1 0.1709 3.4609 -0.6838 34 1 -0.6536 3.0091 0.8195 35 1 0.3509 5.7981 0.6428 36 1 -1.0306 5.3644 -0.3983 37 1 -2.0775 6.0148 1.6217 38 1 -2.0160 4.2479 1.7485 39 1 -1.4006 5.3539 3.7969 40 1 -0.0768 6.1758 2.9520 41 1 -0.2726 3.1445 2.9320 42 1 0.4794 4.0076 4.2994 43 1 2.4932 2.6069 3.4326 44 1 4.1883 4.8768 2.3011 45 1 4.7770 3.3224 2.9376 46 1 3.8236 3.3651 1.4351 47 1 1.9405 4.2149 5.1803 48 1 3.7127 4.0942 5.0652 49 1 2.8676 5.4902 4.3542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691154522.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:35 Heat of formation + Delta-G solvation = -41.617851 kcal Electronic energy + Delta-G solvation = -23051.413531 eV Core-core repulsion = 20204.571355 eV Total energy + Delta-G solvation = -2846.842176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.84906 -37.68731 -36.34263 -34.41634 -33.46767 -31.75280 -30.31912 -28.48848 -27.98966 -25.30158 -24.76429 -23.94031 -21.68848 -21.49127 -21.00800 -19.53971 -18.77831 -17.02455 -16.72949 -15.99792 -15.74634 -15.66004 -15.29590 -14.86174 -14.56317 -14.42426 -14.33668 -14.02741 -13.83382 -13.45521 -13.36970 -12.99632 -12.88115 -12.73210 -12.71163 -12.57174 -12.34759 -12.24747 -11.94364 -11.71008 -11.64139 -11.59533 -11.39032 -11.26730 -11.18063 -11.02470 -10.91467 -10.68134 -10.59068 -10.53367 -8.72286 -8.18862 -6.13728 1.31052 1.36253 1.43818 2.39231 3.13980 3.63780 3.80547 3.87952 4.07695 4.18901 4.27048 4.36007 4.39701 4.44479 4.50478 4.52568 4.57591 4.60476 4.65504 4.81640 4.83936 4.93677 4.96411 4.98761 5.06928 5.13563 5.14703 5.16998 5.19224 5.24321 5.31244 5.32294 5.36159 5.40480 5.42482 5.47119 5.55187 5.56585 5.63585 5.64717 5.69293 5.85348 5.92638 5.94863 6.28350 6.72104 6.98774 7.12007 7.49647 8.97547 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.018554 B = 0.007331 C = 0.006169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1508.709099 B = 3818.258495 C = 4537.944345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.200 3.800 4 H -0.007 1.007 5 C -0.491 4.491 6 H 0.053 0.947 7 C 0.011 3.989 8 N -0.949 5.949 9 Si 0.914 3.086 10 H -0.288 1.288 11 H -0.294 1.294 12 H -0.225 1.225 13 N -0.665 5.665 14 C 0.103 3.897 15 H 0.040 0.960 16 C -0.140 4.140 17 C -0.112 4.112 18 C -0.110 4.110 19 C -0.113 4.113 20 C -0.111 4.111 21 C -0.056 4.056 22 H 0.061 0.939 23 C -0.069 4.069 24 C -0.150 4.150 25 C -0.143 4.143 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.259 0.741 32 H 0.329 0.671 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.066 0.934 44 H 0.038 0.962 45 H 0.026 0.974 46 H 0.062 0.938 47 H 0.069 0.931 48 H 0.044 0.956 49 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.723 8.048 8.572 19.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.171 4.171 3 C 0.090 3.910 4 H 0.011 0.989 5 C -0.529 4.529 6 H 0.071 0.929 7 C -0.185 4.185 8 N -0.591 5.591 9 Si 0.740 3.260 10 H -0.215 1.215 11 H -0.220 1.220 12 H -0.148 1.148 13 N -0.296 5.296 14 C -0.008 4.008 15 H 0.059 0.941 16 C -0.179 4.179 17 C -0.150 4.150 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.148 4.148 21 C -0.074 4.074 22 H 0.080 0.920 23 C -0.087 4.087 24 C -0.207 4.207 25 C -0.200 4.200 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.045 0.955 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.063 0.937 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.937 8.057 8.675 19.060 hybrid contribution -0.094 -0.435 -1.845 1.898 sum -15.031 7.621 6.830 18.184 Atomic orbital electron populations 1.21819 0.95133 1.01995 1.01260 1.22065 0.95526 0.98746 1.00719 1.19295 0.93338 0.90573 0.87756 0.98937 1.21535 0.92017 1.38637 1.00751 0.92885 1.25674 0.95592 0.95616 1.01609 1.70105 1.12886 1.47957 1.28162 0.86398 0.82169 0.77119 0.80307 1.21451 1.22015 1.14789 1.60587 1.41288 1.01942 1.25778 1.21942 0.94094 0.89033 0.95712 0.94119 1.22064 0.97792 0.98534 0.99531 1.21270 0.99137 0.95978 0.98605 1.20436 0.97831 1.02170 0.94300 1.20457 0.98847 0.98072 0.97699 1.21477 0.94816 0.98342 1.00149 1.20883 0.95273 0.98183 0.93106 0.92044 1.20862 0.93635 1.00074 0.94159 1.21952 0.97392 0.99335 1.02024 1.21929 1.01390 0.99914 0.96773 0.91782 0.91724 0.93814 0.94066 0.92739 0.93235 0.85108 0.94728 0.91527 0.92218 0.91994 0.91461 0.92293 0.91208 0.92356 0.92401 0.90534 0.91562 0.94313 0.95509 0.91876 0.91266 0.93677 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.44 9.82 71.98 0.71 -3.73 16 2 C -0.13 -5.33 4.68 30.59 0.14 -5.19 16 3 C 0.20 8.83 1.30 44.17 0.06 8.89 16 4 H -0.01 -0.31 5.29 -2.39 -0.01 -0.33 16 5 C -0.49 -27.34 8.68 25.60 0.22 -27.12 16 6 H 0.05 3.30 6.07 -2.91 -0.02 3.28 16 7 C 0.01 0.65 5.35 84.66 0.45 1.10 16 8 N -0.95 -60.04 13.96 21.45 0.30 -59.74 16 9 Si 0.91 44.26 25.75 68.60 1.77 46.02 16 10 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 11 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.23 -9.77 5.38 99.48 0.54 -9.24 16 13 N -0.67 -24.59 4.02 -469.60 -1.89 -26.48 16 14 C 0.10 3.40 1.22 45.64 0.06 3.45 16 15 H 0.04 1.67 6.99 -2.39 -0.02 1.65 16 16 C -0.14 -3.95 4.43 30.14 0.13 -3.82 16 17 C -0.11 -2.56 5.61 30.19 0.17 -2.39 16 18 C -0.11 -2.02 5.26 28.73 0.15 -1.87 16 19 C -0.11 -2.03 5.26 28.74 0.15 -1.88 16 20 C -0.11 -2.38 4.97 30.20 0.15 -2.23 16 21 C -0.06 -1.52 1.17 -11.25 -0.01 -1.53 16 22 H 0.06 1.66 6.63 -2.39 -0.02 1.65 16 23 C -0.07 -2.09 2.01 -10.79 -0.02 -2.12 16 24 C -0.15 -5.67 8.87 71.98 0.64 -5.04 16 25 C -0.14 -3.46 8.79 71.98 0.63 -2.83 16 26 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 27 H 0.06 1.74 6.44 -2.39 -0.02 1.72 16 28 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.80 4.81 -2.38 -0.01 1.79 16 30 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 32 H 0.33 10.73 5.67 -89.70 -0.51 10.22 16 33 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 34 H 0.07 1.73 6.30 -2.39 -0.02 1.71 16 35 H 0.06 1.44 6.97 -2.39 -0.02 1.42 16 36 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.06 1.07 7.47 -2.39 -0.02 1.06 16 39 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.06 1.06 7.47 -2.39 -0.02 1.04 16 41 H 0.06 1.29 6.49 -2.39 -0.02 1.28 16 42 H 0.08 1.51 5.56 -2.39 -0.01 1.50 16 43 H 0.07 2.25 7.34 -2.39 -0.02 2.24 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.06 2.89 3.26 -2.39 -0.01 2.88 16 47 H 0.07 1.41 6.25 -2.39 -0.01 1.39 16 48 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 Total: -1.00 -63.05 336.67 4.04 -59.01 By element: Atomic # 1 Polarization: 27.25 SS G_CDS: 0.23 Total: 27.48 kcal Atomic # 6 Polarization: -49.92 SS G_CDS: 3.63 Total: -46.29 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.59 Total: -86.22 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.77 Total: 46.02 kcal Total: -63.05 4.04 -59.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691154522.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.387 kcal (2) G-P(sol) polarization free energy of solvation -63.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds