Wall clock time and date at job start Mon Mar 30 2020 07:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46825 * 2 1 4 4 H 1.08995 * 109.47417 * 305.59031 * 3 2 1 5 5 C 1.50704 * 109.46922 * 185.59384 * 3 2 1 6 6 H 1.07999 * 119.99740 * 245.22986 * 5 3 2 7 7 C 1.37872 * 119.99968 * 65.22958 * 5 3 2 8 8 N 1.31512 * 120.00250 * 194.29853 * 7 5 3 9 9 Si 1.86803 * 120.00084 * 14.30060 * 7 5 3 10 10 H 1.48499 * 109.47018 * 87.26255 * 9 7 5 11 11 H 1.48501 * 109.47234 * 207.26278 * 9 7 5 12 12 H 1.48500 * 109.46873 * 327.26524 * 9 7 5 13 13 N 1.46904 * 109.47119 * 65.59863 * 3 2 1 14 14 C 1.46902 * 110.99830 * 214.88605 * 13 3 2 15 15 H 1.09003 * 108.85165 * 318.97931 * 14 13 3 16 16 C 1.54060 * 108.87971 * 77.44500 * 14 13 3 17 17 C 1.54068 * 112.81780 * 162.49137 * 16 14 13 18 18 C 1.50480 * 112.49689 * 41.72204 * 17 16 14 19 19 C 1.54248 * 108.52356 * 265.85391 * 18 17 16 20 20 C 1.45541 * 112.40198 * 79.98062 * 19 18 17 21 21 C 1.50474 * 108.87505 * 200.42418 * 14 13 3 22 22 H 1.08997 * 109.62883 * 264.96677 * 21 14 13 23 23 C 1.53003 * 109.63096 * 25.35654 * 21 14 13 24 24 C 1.53003 * 109.46880 * 66.35130 * 23 21 14 25 25 C 1.53000 * 109.47043 * 186.35367 * 23 21 14 26 26 H 1.09002 * 109.46549 * 174.86331 * 1 2 3 27 27 H 1.08999 * 109.47083 * 294.86656 * 1 2 3 28 28 H 1.09003 * 109.47043 * 54.86745 * 1 2 3 29 29 H 1.08996 * 109.47081 * 120.00068 * 2 1 3 30 30 H 1.08998 * 109.47429 * 240.00343 * 2 1 3 31 31 H 0.97002 * 120.00365 * 180.02562 * 8 7 5 32 32 H 1.00900 * 110.99599 * 338.83147 * 13 3 2 33 33 H 1.08996 * 108.81629 * 283.35714 * 16 14 13 34 34 H 1.09005 * 108.81296 * 41.63579 * 16 14 13 35 35 H 1.08998 * 108.87790 * 280.94022 * 17 16 14 36 36 H 1.09003 * 108.88033 * 162.49496 * 17 16 14 37 37 H 1.09001 * 109.62597 * 146.14152 * 18 17 16 38 38 H 1.08991 * 109.62640 * 25.56259 * 18 17 16 39 39 H 1.09004 * 108.89537 * 319.22120 * 19 18 17 40 40 H 1.08997 * 108.81276 * 200.67686 * 19 18 17 41 41 H 1.09001 * 108.89584 * 177.30471 * 20 19 18 42 42 H 1.08998 * 108.89567 * 58.81253 * 20 19 18 43 43 H 1.09003 * 109.46764 * 306.35536 * 23 21 14 44 44 H 1.08999 * 109.46899 * 67.76171 * 24 23 21 45 45 H 1.09004 * 109.46708 * 187.75901 * 24 23 21 46 46 H 1.08998 * 109.47278 * 307.75599 * 24 23 21 47 47 H 1.08991 * 109.46842 * 64.78699 * 25 23 21 48 48 H 1.08997 * 109.46663 * 184.79242 * 25 23 21 49 49 H 1.09001 * 109.46779 * 304.78637 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 -0.8356 5 6 3.5406 1.4448 -0.1385 6 1 4.1569 1.8097 0.6698 7 6 4.1267 0.9811 -1.2971 8 7 5.4148 0.7170 -1.3224 9 14 3.0911 0.7278 -2.8310 10 1 3.0246 1.9974 -3.5985 11 1 3.7058 -0.3287 -3.6744 12 1 1.7199 0.3135 -2.4396 13 7 1.6637 2.0949 1.2613 14 6 1.3550 3.5151 1.0477 15 1 2.0805 3.9321 0.3492 16 6 -0.0520 3.6322 0.4310 17 6 -0.6452 5.0481 0.5605 18 6 0.3688 6.1249 0.2832 19 6 0.9878 6.5719 1.6234 20 6 2.0190 5.6572 2.0906 21 6 1.4703 4.2412 2.3606 22 1 0.4885 4.3089 2.8291 23 6 2.4291 3.4858 3.2832 24 6 3.8434 3.5379 2.7018 25 6 2.4227 4.1361 4.6681 26 1 -0.3632 -1.0236 -0.0920 27 1 -0.3633 0.4321 0.9324 28 1 -0.3633 0.5914 -0.8405 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 5.8272 0.3911 -2.1376 32 1 0.8890 1.6182 1.6978 33 1 0.0044 3.3699 -0.6255 34 1 -0.7149 2.9262 0.9313 35 1 -1.0300 5.1781 1.5720 36 1 -1.4703 5.1508 -0.1444 37 1 -0.1199 6.9734 -0.1956 38 1 1.1498 5.7332 -0.3683 39 1 0.1999 6.6292 2.3745 40 1 1.4257 7.5619 1.4955 41 1 2.4489 6.0507 3.0117 42 1 2.8030 5.5941 1.3361 43 1 2.1091 2.4473 3.3679 44 1 4.2164 4.5612 2.7447 45 1 4.4987 2.8877 3.2815 46 1 3.8227 3.2018 1.6651 47 1 1.4361 4.0237 5.1176 48 1 3.1673 3.6523 5.3001 49 1 2.6600 5.1957 4.5730 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691154524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:38 Heat of formation + Delta-G solvation = -24.483087 kcal Electronic energy + Delta-G solvation = -23112.368720 eV Core-core repulsion = 20266.269563 eV Total energy + Delta-G solvation = -2846.099157 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.65625 -36.16318 -34.97965 -32.75127 -31.78643 -30.62507 -28.70426 -26.64530 -26.46818 -24.72966 -23.23825 -22.24034 -21.20605 -19.78020 -19.32435 -18.09303 -16.73663 -15.69479 -14.98867 -14.62135 -14.42271 -14.11636 -13.81280 -13.60769 -13.41089 -13.11968 -12.81983 -12.66091 -12.50911 -12.01138 -11.87732 -11.73067 -11.61646 -11.44879 -11.21634 -10.93763 -10.77384 -10.63859 -10.53484 -10.42752 -10.23552 -10.18155 -10.05364 -9.90971 -9.70421 -9.60206 -9.45335 -9.33778 -8.96034 -8.39897 -7.15162 -6.00111 -3.92014 3.29868 3.39072 3.41807 4.47589 4.85144 4.93726 5.02154 5.22987 5.28692 5.37259 5.46125 5.52464 5.59350 5.65925 5.72938 5.81790 5.84696 5.89611 5.92665 6.00332 6.06233 6.11825 6.15828 6.20981 6.31733 6.35733 6.38291 6.40154 6.45136 6.47807 6.53571 6.54670 6.59677 6.64718 6.71571 6.77027 6.83365 6.94837 7.00193 7.07293 7.23616 7.29316 7.50764 7.86911 8.09924 8.39403 8.83751 9.20464 9.67222 11.12677 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017104 B = 0.007443 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.626874 B = 3761.138966 C = 4143.771890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.134 4.134 3 C 0.191 3.809 4 H -0.001 1.001 5 C -0.497 4.497 6 H 0.090 0.910 7 C 0.070 3.930 8 N -0.896 5.896 9 Si 0.854 3.146 10 H -0.283 1.283 11 H -0.291 1.291 12 H -0.254 1.254 13 N -0.662 5.662 14 C 0.098 3.902 15 H 0.080 0.920 16 C -0.146 4.146 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.112 4.112 20 C -0.118 4.118 21 C -0.063 4.063 22 H 0.056 0.944 23 C -0.068 4.068 24 C -0.146 4.146 25 C -0.151 4.151 26 H 0.041 0.959 27 H 0.045 0.955 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.260 0.740 32 H 0.317 0.683 33 H 0.055 0.945 34 H 0.052 0.948 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.054 0.946 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.030 0.970 45 H 0.036 0.964 46 H 0.097 0.903 47 H 0.041 0.959 48 H 0.046 0.954 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.950 8.016 6.410 15.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.173 4.173 3 C 0.083 3.917 4 H 0.017 0.983 5 C -0.535 4.535 6 H 0.107 0.893 7 C -0.131 4.131 8 N -0.535 5.535 9 Si 0.681 3.319 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.179 1.179 13 N -0.291 5.291 14 C -0.013 4.013 15 H 0.098 0.902 16 C -0.185 4.185 17 C -0.149 4.149 18 C -0.157 4.157 19 C -0.149 4.149 20 C -0.156 4.156 21 C -0.082 4.082 22 H 0.075 0.925 23 C -0.087 4.087 24 C -0.203 4.203 25 C -0.209 4.209 26 H 0.060 0.940 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.134 0.866 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.067 0.933 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.082 0.918 43 H 0.104 0.896 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.115 0.885 47 H 0.060 0.940 48 H 0.065 0.935 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -10.124 8.038 6.480 14.460 hybrid contribution -1.377 -0.263 -1.549 2.090 sum -11.501 7.775 4.930 14.732 Atomic orbital electron populations 1.21920 0.98763 1.00148 1.00318 1.22232 0.92309 1.00710 1.02034 1.19561 0.96575 0.89072 0.86509 0.98338 1.21178 0.89331 1.40936 1.02068 0.89265 1.24917 0.94599 0.95083 0.98467 1.69960 1.10893 1.45012 1.27610 0.87402 0.82137 0.77850 0.84469 1.20959 1.21762 1.17855 1.61017 1.40827 1.00784 1.26489 1.21366 0.93591 0.90519 0.95839 0.90155 1.22754 0.98415 0.96021 1.01354 1.21257 0.97777 0.94880 1.00987 1.21362 0.98990 0.97781 0.97597 1.20480 0.98874 0.98766 0.96817 1.20600 0.98442 0.95304 1.01213 1.20894 0.98047 0.93647 0.95645 0.92534 1.20860 0.96049 0.99991 0.91803 1.21966 0.94754 0.98934 1.04681 1.22011 1.00273 1.00409 0.98182 0.94018 0.93561 0.93886 0.92040 0.92103 0.92966 0.86565 0.92653 0.92913 0.92473 0.93291 0.92689 0.91291 0.92794 0.93036 0.92245 0.91776 0.89639 0.95136 0.94453 0.88493 0.93957 0.93472 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 9.69 37.16 0.36 -2.24 16 2 C -0.13 -2.78 4.73 -26.73 -0.13 -2.90 16 3 C 0.19 4.20 1.32 -68.86 -0.09 4.10 16 4 H 0.00 -0.02 5.50 -51.93 -0.29 -0.31 16 5 C -0.50 -13.23 8.91 -34.44 -0.31 -13.54 16 6 H 0.09 2.59 5.87 -52.49 -0.31 2.28 16 7 C 0.07 1.97 5.34 -17.82 -0.10 1.88 16 8 N -0.90 -26.95 13.96 55.43 0.77 -26.18 16 9 Si 0.85 20.93 25.82 -169.99 -4.39 16.54 16 10 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 12 H -0.25 -5.83 5.43 56.52 0.31 -5.53 16 13 N -0.66 -12.25 3.13 -101.70 -0.32 -12.57 16 14 C 0.10 1.61 0.89 -68.42 -0.06 1.55 16 15 H 0.08 1.57 6.29 -51.93 -0.33 1.24 16 16 C -0.15 -2.17 5.05 -25.62 -0.13 -2.30 16 17 C -0.11 -1.40 5.31 -27.43 -0.15 -1.54 16 18 C -0.12 -1.50 5.61 -27.34 -0.15 -1.65 16 19 C -0.11 -1.34 5.26 -29.60 -0.16 -1.49 16 20 C -0.12 -1.60 3.46 -29.60 -0.10 -1.70 16 21 C -0.06 -0.92 1.58 -91.23 -0.14 -1.06 16 22 H 0.06 0.78 6.99 -51.93 -0.36 0.42 16 23 C -0.07 -1.06 2.25 -90.62 -0.20 -1.26 16 24 C -0.15 -2.62 8.28 37.16 0.31 -2.31 16 25 C -0.15 -2.00 9.09 37.16 0.34 -1.66 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.70 6.69 -51.93 -0.35 0.35 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.06 1.37 4.85 -51.93 -0.25 1.11 16 31 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.32 5.41 6.12 -39.29 -0.24 5.17 16 33 H 0.05 0.91 7.36 -51.93 -0.38 0.53 16 34 H 0.05 0.75 7.78 -51.93 -0.40 0.35 16 35 H 0.06 0.68 6.64 -51.93 -0.34 0.34 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.98 6.97 -51.93 -0.36 0.62 16 39 H 0.05 0.61 7.47 -51.93 -0.39 0.22 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.77 5.95 -51.93 -0.31 0.46 16 42 H 0.06 0.98 7.02 -51.93 -0.36 0.62 16 43 H 0.09 1.44 6.79 -51.93 -0.35 1.09 16 44 H 0.03 0.50 7.19 -51.93 -0.37 0.13 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 46 H 0.10 2.07 3.91 -51.93 -0.20 1.86 16 47 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.05 0.60 6.20 -51.93 -0.32 0.28 16 LS Contribution 336.52 15.07 5.07 5.07 Total: -1.00 -27.44 336.52 -8.53 -35.98 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.96 Total: 7.28 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: -0.71 Total: -26.12 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.46 Total: -38.75 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.39 Total: 16.54 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.44 -8.53 -35.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691154524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.496 kcal (2) G-P(sol) polarization free energy of solvation -27.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds