Wall clock time and date at job start Mon Mar 30 2020 07:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46825 * 2 1 4 4 H 1.08995 * 109.47417 * 305.59031 * 3 2 1 5 5 C 1.50704 * 109.46922 * 185.59384 * 3 2 1 6 6 H 1.07999 * 119.99740 * 245.22986 * 5 3 2 7 7 C 1.37872 * 119.99968 * 65.22958 * 5 3 2 8 8 N 1.31512 * 120.00250 * 194.29853 * 7 5 3 9 9 Si 1.86803 * 120.00084 * 14.30060 * 7 5 3 10 10 H 1.48499 * 109.47018 * 87.26255 * 9 7 5 11 11 H 1.48501 * 109.47234 * 207.26278 * 9 7 5 12 12 H 1.48500 * 109.46873 * 327.26524 * 9 7 5 13 13 N 1.46904 * 109.47119 * 65.59863 * 3 2 1 14 14 C 1.46902 * 110.99830 * 214.88605 * 13 3 2 15 15 H 1.09003 * 108.85165 * 318.97931 * 14 13 3 16 16 C 1.54060 * 108.87971 * 77.44500 * 14 13 3 17 17 C 1.54068 * 112.81780 * 162.49137 * 16 14 13 18 18 C 1.50480 * 112.49689 * 41.72204 * 17 16 14 19 19 C 1.54248 * 108.52356 * 265.85391 * 18 17 16 20 20 C 1.45541 * 112.40198 * 79.98062 * 19 18 17 21 21 C 1.50474 * 108.87505 * 200.42418 * 14 13 3 22 22 H 1.08997 * 109.62883 * 264.96677 * 21 14 13 23 23 C 1.53003 * 109.63096 * 25.35654 * 21 14 13 24 24 C 1.53003 * 109.46880 * 66.35130 * 23 21 14 25 25 C 1.53000 * 109.47043 * 186.35367 * 23 21 14 26 26 H 1.09002 * 109.46549 * 174.86331 * 1 2 3 27 27 H 1.08999 * 109.47083 * 294.86656 * 1 2 3 28 28 H 1.09003 * 109.47043 * 54.86745 * 1 2 3 29 29 H 1.08996 * 109.47081 * 120.00068 * 2 1 3 30 30 H 1.08998 * 109.47429 * 240.00343 * 2 1 3 31 31 H 0.97002 * 120.00365 * 180.02562 * 8 7 5 32 32 H 1.00900 * 110.99599 * 338.83147 * 13 3 2 33 33 H 1.08996 * 108.81629 * 283.35714 * 16 14 13 34 34 H 1.09005 * 108.81296 * 41.63579 * 16 14 13 35 35 H 1.08998 * 108.87790 * 280.94022 * 17 16 14 36 36 H 1.09003 * 108.88033 * 162.49496 * 17 16 14 37 37 H 1.09001 * 109.62597 * 146.14152 * 18 17 16 38 38 H 1.08991 * 109.62640 * 25.56259 * 18 17 16 39 39 H 1.09004 * 108.89537 * 319.22120 * 19 18 17 40 40 H 1.08997 * 108.81276 * 200.67686 * 19 18 17 41 41 H 1.09001 * 108.89584 * 177.30471 * 20 19 18 42 42 H 1.08998 * 108.89567 * 58.81253 * 20 19 18 43 43 H 1.09003 * 109.46764 * 306.35536 * 23 21 14 44 44 H 1.08999 * 109.46899 * 67.76171 * 24 23 21 45 45 H 1.09004 * 109.46708 * 187.75901 * 24 23 21 46 46 H 1.08998 * 109.47278 * 307.75599 * 24 23 21 47 47 H 1.08991 * 109.46842 * 64.78699 * 25 23 21 48 48 H 1.08997 * 109.46663 * 184.79242 * 25 23 21 49 49 H 1.09001 * 109.46779 * 304.78637 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5972 1.9844 -0.8356 5 6 3.5406 1.4448 -0.1385 6 1 4.1569 1.8097 0.6698 7 6 4.1267 0.9811 -1.2971 8 7 5.4148 0.7170 -1.3224 9 14 3.0911 0.7278 -2.8310 10 1 3.0246 1.9974 -3.5985 11 1 3.7058 -0.3287 -3.6744 12 1 1.7199 0.3135 -2.4396 13 7 1.6637 2.0949 1.2613 14 6 1.3550 3.5151 1.0477 15 1 2.0805 3.9321 0.3492 16 6 -0.0520 3.6322 0.4310 17 6 -0.6452 5.0481 0.5605 18 6 0.3688 6.1249 0.2832 19 6 0.9878 6.5719 1.6234 20 6 2.0190 5.6572 2.0906 21 6 1.4703 4.2412 2.3606 22 1 0.4885 4.3089 2.8291 23 6 2.4291 3.4858 3.2832 24 6 3.8434 3.5379 2.7018 25 6 2.4227 4.1361 4.6681 26 1 -0.3632 -1.0236 -0.0920 27 1 -0.3633 0.4321 0.9324 28 1 -0.3633 0.5914 -0.8405 29 1 1.8934 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 5.8272 0.3911 -2.1376 32 1 0.8890 1.6182 1.6978 33 1 0.0044 3.3699 -0.6255 34 1 -0.7149 2.9262 0.9313 35 1 -1.0300 5.1781 1.5720 36 1 -1.4703 5.1508 -0.1444 37 1 -0.1199 6.9734 -0.1956 38 1 1.1498 5.7332 -0.3683 39 1 0.1999 6.6292 2.3745 40 1 1.4257 7.5619 1.4955 41 1 2.4489 6.0507 3.0117 42 1 2.8030 5.5941 1.3361 43 1 2.1091 2.4473 3.3679 44 1 4.2164 4.5612 2.7447 45 1 4.4987 2.8877 3.2815 46 1 3.8227 3.2018 1.6651 47 1 1.4361 4.0237 5.1176 48 1 3.1673 3.6523 5.3001 49 1 2.6600 5.1957 4.5730 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691154524.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:37 Heat of formation + Delta-G solvation = -38.959712 kcal Electronic energy + Delta-G solvation = -23112.996473 eV Core-core repulsion = 20266.269563 eV Total energy + Delta-G solvation = -2846.726910 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.91013 -37.71700 -36.15068 -34.48617 -33.49663 -31.81210 -30.15136 -28.37598 -27.78134 -25.92227 -24.68691 -23.75102 -22.38821 -21.41055 -20.56350 -19.38209 -18.76872 -16.95296 -16.68011 -16.03139 -15.82665 -15.51607 -15.10946 -14.96783 -14.73548 -14.51383 -14.30501 -14.02359 -13.87162 -13.53378 -13.45273 -13.00421 -12.82111 -12.75341 -12.74404 -12.50266 -12.29335 -12.14880 -12.01766 -11.69651 -11.63586 -11.53484 -11.31667 -11.27304 -11.20323 -11.09224 -10.87784 -10.68160 -10.60862 -10.52752 -8.71567 -8.19208 -6.13414 1.30891 1.35501 1.42626 2.38870 3.13330 3.63340 3.75377 3.89265 4.13708 4.23092 4.33651 4.33974 4.37623 4.42319 4.45100 4.53600 4.56091 4.63355 4.68519 4.79300 4.85315 4.92099 4.98397 4.99796 5.03605 5.10813 5.16804 5.17557 5.19063 5.24915 5.31974 5.33902 5.36019 5.38152 5.42093 5.43563 5.53271 5.58056 5.61883 5.70831 5.73787 5.86533 5.93590 5.98538 6.28786 6.73158 6.99708 7.11072 7.49727 8.97188 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017104 B = 0.007443 C = 0.006756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.626874 B = 3761.138966 C = 4143.771890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.134 4.134 3 C 0.200 3.800 4 H -0.008 1.008 5 C -0.490 4.490 6 H 0.053 0.947 7 C 0.012 3.988 8 N -0.949 5.949 9 Si 0.912 3.088 10 H -0.286 1.286 11 H -0.295 1.295 12 H -0.226 1.226 13 N -0.665 5.665 14 C 0.103 3.897 15 H 0.040 0.960 16 C -0.141 4.141 17 C -0.106 4.106 18 C -0.121 4.121 19 C -0.110 4.110 20 C -0.112 4.112 21 C -0.056 4.056 22 H 0.079 0.921 23 C -0.065 4.065 24 C -0.140 4.140 25 C -0.144 4.144 26 H 0.061 0.939 27 H 0.066 0.934 28 H 0.042 0.958 29 H 0.054 0.946 30 H 0.041 0.959 31 H 0.259 0.741 32 H 0.330 0.670 33 H 0.034 0.966 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.040 0.960 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.071 0.929 44 H 0.039 0.961 45 H 0.023 0.977 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.044 0.956 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.654 9.066 7.571 18.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C 0.091 3.909 4 H 0.009 0.991 5 C -0.529 4.529 6 H 0.071 0.929 7 C -0.184 4.184 8 N -0.590 5.590 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.221 1.221 12 H -0.149 1.149 13 N -0.296 5.296 14 C -0.007 4.007 15 H 0.059 0.941 16 C -0.181 4.181 17 C -0.144 4.144 18 C -0.159 4.159 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.075 4.075 22 H 0.097 0.903 23 C -0.083 4.083 24 C -0.197 4.197 25 C -0.202 4.202 26 H 0.080 0.920 27 H 0.085 0.915 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.149 0.851 33 H 0.053 0.947 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.092 0.908 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.090 0.910 44 H 0.058 0.942 45 H 0.042 0.958 46 H 0.076 0.924 47 H 0.080 0.920 48 H 0.064 0.936 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -13.867 9.095 7.658 18.266 hybrid contribution -0.126 -0.549 -1.827 1.912 sum -13.993 8.546 5.831 17.402 Atomic orbital electron populations 1.21817 0.95094 1.01766 1.01487 1.22097 0.95548 0.98792 1.00802 1.19298 0.93316 0.90475 0.87821 0.99096 1.21542 0.91997 1.38690 1.00677 0.92883 1.25659 0.95550 0.95548 1.01649 1.70111 1.12987 1.47614 1.28322 0.86440 0.81937 0.77350 0.80441 1.21271 1.22131 1.14907 1.60841 1.41948 1.01885 1.24877 1.21308 0.93920 0.89044 0.96405 0.94138 1.22666 0.97201 0.98274 0.99910 1.21237 0.97800 0.92954 1.02434 1.21372 0.98412 0.98450 0.97639 1.20457 0.98819 0.98592 0.96848 1.20552 0.98362 0.95188 1.00902 1.20848 0.98804 0.93683 0.94143 0.90261 1.20791 0.94163 0.99839 0.93557 1.21853 0.96848 0.98849 1.02133 1.21923 1.01464 1.00565 0.96204 0.91992 0.91476 0.93840 0.92714 0.94037 0.93243 0.85118 0.94676 0.91549 0.90692 0.92024 0.90905 0.94093 0.90774 0.92014 0.91156 0.94695 0.91028 0.94235 0.95797 0.92405 0.91985 0.93641 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.69 71.98 0.70 -3.71 16 2 C -0.13 -5.41 4.73 30.60 0.14 -5.26 16 3 C 0.20 8.87 1.32 44.17 0.06 8.93 16 4 H -0.01 -0.39 5.50 -2.39 -0.01 -0.40 16 5 C -0.49 -27.39 8.91 25.60 0.23 -27.17 16 6 H 0.05 3.31 5.87 -2.91 -0.02 3.29 16 7 C 0.01 0.70 5.34 84.65 0.45 1.16 16 8 N -0.95 -60.08 13.96 21.44 0.30 -59.78 16 9 Si 0.91 44.38 25.82 68.60 1.77 46.15 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 12 H -0.23 -9.88 5.43 99.48 0.54 -9.34 16 13 N -0.67 -24.55 3.13 -475.66 -1.49 -26.04 16 14 C 0.10 3.39 0.89 44.46 0.04 3.42 16 15 H 0.04 1.65 6.29 -2.39 -0.02 1.64 16 16 C -0.14 -3.89 5.05 31.31 0.16 -3.74 16 17 C -0.11 -2.32 5.31 30.14 0.16 -2.16 16 18 C -0.12 -2.76 5.61 30.20 0.17 -2.59 16 19 C -0.11 -2.31 5.26 28.74 0.15 -2.16 16 20 C -0.11 -2.88 3.46 28.74 0.10 -2.78 16 21 C -0.06 -1.53 1.58 -11.19 -0.02 -1.54 16 22 H 0.08 1.87 6.99 -2.39 -0.02 1.85 16 23 C -0.06 -1.94 2.25 -10.79 -0.02 -1.97 16 24 C -0.14 -5.21 8.28 71.98 0.60 -4.61 16 25 C -0.14 -3.44 9.09 71.98 0.65 -2.78 16 26 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.07 1.77 6.69 -2.39 -0.02 1.75 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.04 1.82 4.85 -2.39 -0.01 1.81 16 31 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 32 H 0.33 10.67 6.12 -89.69 -0.55 10.12 16 33 H 0.03 1.10 7.36 -2.39 -0.02 1.08 16 34 H 0.07 1.66 7.78 -2.38 -0.02 1.64 16 35 H 0.07 1.41 6.64 -2.39 -0.02 1.39 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.04 1.16 6.97 -2.39 -0.02 1.14 16 39 H 0.07 1.31 7.47 -2.39 -0.02 1.30 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.07 1.65 5.95 -2.39 -0.01 1.64 16 42 H 0.03 1.09 7.02 -2.39 -0.02 1.07 16 43 H 0.07 2.35 6.79 -2.39 -0.02 2.34 16 44 H 0.04 1.34 7.19 -2.39 -0.02 1.33 16 45 H 0.02 0.90 8.14 -2.38 -0.02 0.88 16 46 H 0.06 2.64 3.91 -2.39 -0.01 2.63 16 47 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 48 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.06 1.27 6.20 -2.39 -0.01 1.25 16 Total: -1.00 -63.45 336.52 4.34 -59.10 By element: Atomic # 1 Polarization: 27.33 SS G_CDS: 0.20 Total: 27.53 kcal Atomic # 6 Polarization: -50.53 SS G_CDS: 3.57 Total: -46.96 kcal Atomic # 7 Polarization: -84.63 SS G_CDS: -1.19 Total: -85.82 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 1.77 Total: 46.15 kcal Total: -63.45 4.34 -59.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691154524.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.145 kcal (2) G-P(sol) polarization free energy of solvation -63.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds