Wall clock time and date at job start Mon Mar 30 2020 07:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46886 * 2 1 4 4 H 1.08994 * 109.47318 * 307.27592 * 3 2 1 5 5 C 1.50702 * 109.47195 * 187.27437 * 3 2 1 6 6 H 1.07997 * 119.99717 * 240.00462 * 5 3 2 7 7 C 1.37880 * 119.99901 * 59.99838 * 5 3 2 8 8 N 1.31509 * 119.99895 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99610 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46904 * 90.00453 * 9 7 5 11 11 H 1.48500 * 109.46667 * 210.00082 * 9 7 5 12 12 H 1.48493 * 109.47307 * 330.00386 * 9 7 5 13 13 N 1.46900 * 109.46966 * 67.27409 * 3 2 1 14 14 C 1.46898 * 111.00065 * 271.26538 * 13 3 2 15 15 H 1.09002 * 108.76756 * 53.98932 * 14 13 3 16 16 C 1.54064 * 108.87768 * 295.47300 * 14 13 3 17 17 C 1.54059 * 112.81733 * 197.50543 * 16 14 13 18 18 C 1.50469 * 112.50111 * 318.28365 * 17 16 14 19 19 C 1.54242 * 108.52457 * 94.14801 * 18 17 16 20 20 C 1.45539 * 112.40653 * 280.02191 * 19 18 17 21 21 C 1.50477 * 108.87696 * 172.49747 * 14 13 3 22 22 H 1.09001 * 109.78796 * 95.11997 * 21 14 13 23 23 C 1.53005 * 109.62924 * 334.63841 * 21 14 13 24 24 C 1.53002 * 109.46998 * 175.10779 * 23 21 14 25 25 C 1.52995 * 109.47021 * 295.11317 * 23 21 14 26 26 H 1.09004 * 109.46944 * 298.23793 * 1 2 3 27 27 H 1.09004 * 109.47632 * 58.23959 * 1 2 3 28 28 H 1.09005 * 109.47107 * 178.24236 * 1 2 3 29 29 H 1.09000 * 109.47343 * 240.00508 * 2 1 3 30 30 H 1.08994 * 109.47804 * 120.00194 * 2 1 3 31 31 H 0.97003 * 119.99673 * 179.97438 * 8 7 5 32 32 H 1.00905 * 110.99853 * 35.21859 * 13 3 2 33 33 H 1.09010 * 108.81104 * 76.64715 * 16 14 13 34 34 H 1.09002 * 108.72694 * 318.31402 * 16 14 13 35 35 H 1.09007 * 108.87568 * 197.50896 * 17 16 14 36 36 H 1.09000 * 108.79953 * 79.01430 * 17 16 14 37 37 H 1.08998 * 109.62798 * 334.44169 * 18 17 16 38 38 H 1.08998 * 109.79368 * 213.95447 * 18 17 16 39 39 H 1.08994 * 108.89794 * 159.26145 * 19 18 17 40 40 H 1.09000 * 108.81568 * 40.71825 * 19 18 17 41 41 H 1.09000 * 108.89041 * 301.17483 * 20 19 18 42 42 H 1.09001 * 108.81807 * 182.63532 * 20 19 18 43 43 H 1.09003 * 109.46865 * 55.10843 * 23 21 14 44 44 H 1.08993 * 109.47274 * 296.22591 * 24 23 21 45 45 H 1.09003 * 109.46686 * 176.22562 * 24 23 21 46 46 H 1.08997 * 109.46888 * 56.22614 * 24 23 21 47 47 H 1.09000 * 109.46833 * 306.39938 * 25 23 21 48 48 H 1.08998 * 109.47645 * 66.40065 * 25 23 21 49 49 H 1.09007 * 109.47333 * 186.40611 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5743 1.9926 -0.8177 5 6 3.5362 1.4465 -0.1799 6 1 4.1701 1.8808 0.5789 7 6 4.0957 0.8954 -1.3132 8 7 3.3236 0.3668 -2.2373 9 14 5.9503 0.9009 -1.5364 10 1 6.5228 -0.3386 -0.9522 11 1 6.2743 0.9611 -2.9844 12 1 6.5280 2.0843 -0.8502 13 7 1.6987 2.0825 1.2775 14 6 0.3708 2.7078 1.2149 15 1 -0.3533 1.9612 0.8886 16 6 0.4067 3.8518 0.1837 17 6 -0.7696 4.8343 0.3403 18 6 -2.0729 4.1335 0.6128 19 6 -2.2897 4.0780 2.1389 20 6 -1.5300 3.0083 2.7687 21 6 -0.0081 3.1846 2.5909 22 1 0.2542 4.2367 2.7021 23 6 0.7317 2.3565 3.6436 24 6 0.4392 2.9219 5.0350 25 6 0.2589 0.9031 3.5739 26 1 -0.3633 0.4862 0.9054 27 1 -0.3634 0.5409 -0.8738 28 1 -0.3633 -1.0272 -0.0315 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.7173 -0.0206 -3.0347 32 1 1.7518 1.4220 2.0384 33 1 0.3756 3.4232 -0.8181 34 1 1.3411 4.4004 0.3019 35 1 -0.8672 5.4165 -0.5761 36 1 -0.5539 5.5117 1.1666 37 1 -2.0350 3.1208 0.2114 38 1 -2.8914 4.6818 0.1465 39 1 -3.3498 3.9234 2.3395 40 1 -1.9841 5.0303 2.5723 41 1 -1.8289 2.0568 2.3288 42 1 -1.7615 2.9924 3.8337 43 1 1.8039 2.3994 3.4520 44 1 0.8360 3.9345 5.1065 45 1 0.9114 2.2925 5.7894 46 1 -0.6380 2.9411 5.2003 47 1 -0.8278 0.8704 3.6521 48 1 0.5682 0.4656 2.6247 49 1 0.6994 0.3379 4.3952 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691154528.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:40 Heat of formation + Delta-G solvation = -14.474871 kcal Electronic energy + Delta-G solvation = -23134.308657 eV Core-core repulsion = 20288.643489 eV Total energy + Delta-G solvation = -2845.665168 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.95023 -36.03579 -35.17144 -32.64565 -31.35630 -30.41122 -28.77402 -27.22734 -26.08514 -24.77270 -23.34450 -22.16588 -21.32697 -19.88486 -19.14148 -17.78844 -16.50964 -15.65881 -15.17881 -14.92251 -14.34706 -14.23905 -13.61461 -13.55693 -13.42845 -13.24819 -12.88332 -12.60077 -12.30337 -11.97133 -11.73170 -11.57642 -11.45482 -11.22933 -11.16242 -10.94235 -10.77091 -10.66654 -10.55855 -10.38842 -10.33043 -10.14898 -10.06007 -9.91786 -9.86767 -9.67725 -9.55289 -9.29680 -8.83368 -8.23908 -6.93237 -5.91396 -3.93877 3.35615 3.42192 3.46899 4.49533 4.84584 4.88480 5.07177 5.24715 5.28349 5.32844 5.38499 5.42553 5.60764 5.66673 5.71982 5.79445 5.82910 5.88019 5.97637 6.03298 6.05621 6.10567 6.18085 6.20080 6.25113 6.29659 6.33537 6.37300 6.38103 6.42646 6.48716 6.55668 6.61446 6.69430 6.73633 6.83527 6.86527 6.96486 7.05317 7.09717 7.33664 7.57507 7.84392 7.98587 8.41879 8.71921 8.77923 9.14631 9.71133 11.14660 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.006251 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.938911 B = 4478.519273 C = 4861.345037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.149 4.149 3 C 0.213 3.787 4 H 0.038 0.962 5 C -0.490 4.490 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.892 3.108 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.275 1.275 13 N -0.690 5.690 14 C 0.082 3.918 15 H 0.046 0.954 16 C -0.107 4.107 17 C -0.115 4.115 18 C -0.118 4.118 19 C -0.113 4.113 20 C -0.118 4.118 21 C -0.069 4.069 22 H 0.070 0.930 23 C -0.098 4.098 24 C -0.145 4.145 25 C -0.161 4.161 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.030 0.970 29 H 0.098 0.902 30 H 0.029 0.971 31 H 0.258 0.742 32 H 0.332 0.668 33 H 0.057 0.943 34 H 0.067 0.933 35 H 0.052 0.948 36 H 0.055 0.945 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.093 0.907 44 H 0.050 0.950 45 H 0.048 0.952 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.067 0.933 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 4.847 9.502 14.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.189 4.189 3 C 0.105 3.895 4 H 0.056 0.944 5 C -0.529 4.529 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.721 3.279 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.200 1.200 13 N -0.325 5.325 14 C -0.028 4.028 15 H 0.063 0.937 16 C -0.145 4.145 17 C -0.153 4.153 18 C -0.155 4.155 19 C -0.151 4.151 20 C -0.155 4.155 21 C -0.088 4.088 22 H 0.088 0.912 23 C -0.116 4.116 24 C -0.202 4.202 25 C -0.219 4.219 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.068 0.932 32 H 0.155 0.845 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.077 0.923 43 H 0.111 0.889 44 H 0.069 0.931 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.071 0.929 48 H 0.085 0.915 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -10.152 5.337 9.181 14.691 hybrid contribution 0.426 -0.913 -0.296 1.050 sum -9.725 4.425 8.885 13.896 Atomic orbital electron populations 1.22182 0.99734 0.99194 1.00320 1.22281 0.91533 1.02578 1.02498 1.19219 0.95276 0.88403 0.86554 0.94431 1.21241 0.91706 1.36065 1.03903 0.92162 1.24941 0.97772 0.95794 0.96077 1.69875 1.34334 1.40237 1.09311 0.86586 0.86092 0.78260 0.76963 1.20972 1.21507 1.19981 1.61095 1.25341 1.38212 1.07848 1.21462 0.92240 0.95905 0.93179 0.93685 1.21926 0.97460 0.96124 0.98961 1.21326 0.94835 0.98334 1.00821 1.21349 0.97203 1.01344 0.95651 1.20471 0.99281 0.99477 0.95849 1.20644 0.95659 0.98965 1.00240 1.20959 0.93238 0.99821 0.94784 0.91210 1.21197 1.01940 0.94517 0.93991 1.21891 1.00979 1.00503 0.96864 1.22171 1.01033 0.96415 1.02233 0.93253 0.93757 0.95088 0.88428 0.95234 0.93238 0.84505 0.92387 0.91391 0.92957 0.92613 0.91640 0.92722 0.93093 0.92528 0.92426 0.92272 0.88919 0.93098 0.93265 0.93024 0.92869 0.91456 0.93220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 8.61 37.16 0.32 -2.77 16 2 C -0.15 -3.48 4.98 -26.73 -0.13 -3.61 16 3 C 0.21 5.19 2.00 -68.86 -0.14 5.05 16 4 H 0.04 1.01 5.95 -51.93 -0.31 0.70 16 5 C -0.49 -13.47 8.84 -34.44 -0.30 -13.77 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.05 1.50 5.28 -17.82 -0.09 1.40 16 8 N -0.90 -25.60 11.29 55.43 0.63 -24.97 16 9 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 N -0.69 -14.09 5.18 -101.70 -0.53 -14.62 16 14 C 0.08 1.41 0.99 -68.42 -0.07 1.34 16 15 H 0.05 0.81 2.82 -51.93 -0.15 0.66 16 16 C -0.11 -1.87 4.69 -25.62 -0.12 -1.99 16 17 C -0.12 -1.60 5.32 -27.44 -0.15 -1.75 16 18 C -0.12 -1.49 5.61 -27.35 -0.15 -1.64 16 19 C -0.11 -1.31 5.27 -29.60 -0.16 -1.47 16 20 C -0.12 -1.46 3.44 -29.60 -0.10 -1.56 16 21 C -0.07 -0.99 1.59 -91.23 -0.14 -1.14 16 22 H 0.07 1.03 6.99 -51.93 -0.36 0.67 16 23 C -0.10 -1.36 2.17 -90.62 -0.20 -1.56 16 24 C -0.15 -1.70 9.07 37.16 0.34 -1.36 16 25 C -0.16 -2.22 8.20 37.16 0.30 -1.91 16 26 H 0.05 0.88 3.84 -51.93 -0.20 0.68 16 27 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.10 2.60 5.91 -51.93 -0.31 2.29 16 30 H 0.03 0.67 7.95 -51.93 -0.41 0.26 16 31 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 32 H 0.33 6.48 3.49 -39.29 -0.14 6.34 16 33 H 0.06 1.14 6.82 -51.92 -0.35 0.78 16 34 H 0.07 1.31 8.12 -51.93 -0.42 0.88 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.06 0.74 6.63 -51.93 -0.34 0.39 16 37 H 0.06 0.91 6.98 -51.93 -0.36 0.55 16 38 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.63 7.46 -51.93 -0.39 0.25 16 41 H 0.06 0.76 6.71 -51.93 -0.35 0.41 16 42 H 0.06 0.67 5.93 -51.93 -0.31 0.36 16 43 H 0.09 1.50 6.47 -51.93 -0.34 1.16 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.56 6.15 -51.93 -0.32 0.24 16 47 H 0.05 0.67 6.43 -51.93 -0.33 0.34 16 48 H 0.07 1.07 3.99 -51.93 -0.21 0.87 16 49 H 0.05 0.63 8.14 -51.92 -0.42 0.21 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -27.20 333.27 -9.22 -36.42 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.52 Total: 8.26 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -0.79 Total: -26.74 kcal Atomic # 7 Polarization: -39.69 SS G_CDS: 0.10 Total: -39.59 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.20 -9.22 -36.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691154528.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.945 kcal (2) G-P(sol) polarization free energy of solvation -27.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds