Wall clock time and date at job start Mon Mar 30 2020 07:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46886 * 2 1 4 4 H 1.08994 * 109.47318 * 307.27592 * 3 2 1 5 5 C 1.50702 * 109.47195 * 187.27437 * 3 2 1 6 6 H 1.07997 * 119.99717 * 240.00462 * 5 3 2 7 7 C 1.37880 * 119.99901 * 59.99838 * 5 3 2 8 8 N 1.31509 * 119.99895 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 119.99610 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46904 * 90.00453 * 9 7 5 11 11 H 1.48500 * 109.46667 * 210.00082 * 9 7 5 12 12 H 1.48493 * 109.47307 * 330.00386 * 9 7 5 13 13 N 1.46900 * 109.46966 * 67.27409 * 3 2 1 14 14 C 1.46898 * 111.00065 * 271.26538 * 13 3 2 15 15 H 1.09002 * 108.76756 * 53.98932 * 14 13 3 16 16 C 1.54064 * 108.87768 * 295.47300 * 14 13 3 17 17 C 1.54059 * 112.81733 * 197.50543 * 16 14 13 18 18 C 1.50469 * 112.50111 * 318.28365 * 17 16 14 19 19 C 1.54242 * 108.52457 * 94.14801 * 18 17 16 20 20 C 1.45539 * 112.40653 * 280.02191 * 19 18 17 21 21 C 1.50477 * 108.87696 * 172.49747 * 14 13 3 22 22 H 1.09001 * 109.78796 * 95.11997 * 21 14 13 23 23 C 1.53005 * 109.62924 * 334.63841 * 21 14 13 24 24 C 1.53002 * 109.46998 * 175.10779 * 23 21 14 25 25 C 1.52995 * 109.47021 * 295.11317 * 23 21 14 26 26 H 1.09004 * 109.46944 * 298.23793 * 1 2 3 27 27 H 1.09004 * 109.47632 * 58.23959 * 1 2 3 28 28 H 1.09005 * 109.47107 * 178.24236 * 1 2 3 29 29 H 1.09000 * 109.47343 * 240.00508 * 2 1 3 30 30 H 1.08994 * 109.47804 * 120.00194 * 2 1 3 31 31 H 0.97003 * 119.99673 * 179.97438 * 8 7 5 32 32 H 1.00905 * 110.99853 * 35.21859 * 13 3 2 33 33 H 1.09010 * 108.81104 * 76.64715 * 16 14 13 34 34 H 1.09002 * 108.72694 * 318.31402 * 16 14 13 35 35 H 1.09007 * 108.87568 * 197.50896 * 17 16 14 36 36 H 1.09000 * 108.79953 * 79.01430 * 17 16 14 37 37 H 1.08998 * 109.62798 * 334.44169 * 18 17 16 38 38 H 1.08998 * 109.79368 * 213.95447 * 18 17 16 39 39 H 1.08994 * 108.89794 * 159.26145 * 19 18 17 40 40 H 1.09000 * 108.81568 * 40.71825 * 19 18 17 41 41 H 1.09000 * 108.89041 * 301.17483 * 20 19 18 42 42 H 1.09001 * 108.81807 * 182.63532 * 20 19 18 43 43 H 1.09003 * 109.46865 * 55.10843 * 23 21 14 44 44 H 1.08993 * 109.47274 * 296.22591 * 24 23 21 45 45 H 1.09003 * 109.46686 * 176.22562 * 24 23 21 46 46 H 1.08997 * 109.46888 * 56.22614 * 24 23 21 47 47 H 1.09000 * 109.46833 * 306.39938 * 25 23 21 48 48 H 1.08998 * 109.47645 * 66.40065 * 25 23 21 49 49 H 1.09007 * 109.47333 * 186.40611 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5743 1.9926 -0.8177 5 6 3.5362 1.4465 -0.1799 6 1 4.1701 1.8808 0.5789 7 6 4.0957 0.8954 -1.3132 8 7 3.3236 0.3668 -2.2373 9 14 5.9503 0.9009 -1.5364 10 1 6.5228 -0.3386 -0.9522 11 1 6.2743 0.9611 -2.9844 12 1 6.5280 2.0843 -0.8502 13 7 1.6987 2.0825 1.2775 14 6 0.3708 2.7078 1.2149 15 1 -0.3533 1.9612 0.8886 16 6 0.4067 3.8518 0.1837 17 6 -0.7696 4.8343 0.3403 18 6 -2.0729 4.1335 0.6128 19 6 -2.2897 4.0780 2.1389 20 6 -1.5300 3.0083 2.7687 21 6 -0.0081 3.1846 2.5909 22 1 0.2542 4.2367 2.7021 23 6 0.7317 2.3565 3.6436 24 6 0.4392 2.9219 5.0350 25 6 0.2589 0.9031 3.5739 26 1 -0.3633 0.4862 0.9054 27 1 -0.3634 0.5409 -0.8738 28 1 -0.3633 -1.0272 -0.0315 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 3.7173 -0.0206 -3.0347 32 1 1.7518 1.4220 2.0384 33 1 0.3756 3.4232 -0.8181 34 1 1.3411 4.4004 0.3019 35 1 -0.8672 5.4165 -0.5761 36 1 -0.5539 5.5117 1.1666 37 1 -2.0350 3.1208 0.2114 38 1 -2.8914 4.6818 0.1465 39 1 -3.3498 3.9234 2.3395 40 1 -1.9841 5.0303 2.5723 41 1 -1.8289 2.0568 2.3288 42 1 -1.7615 2.9924 3.8337 43 1 1.8039 2.3994 3.4520 44 1 0.8360 3.9345 5.1065 45 1 0.9114 2.2925 5.7894 46 1 -0.6380 2.9411 5.2003 47 1 -0.8278 0.8704 3.6521 48 1 0.5682 0.4656 2.6247 49 1 0.6994 0.3379 4.3952 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691154528.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:39 Heat of formation + Delta-G solvation = -28.133897 kcal Electronic energy + Delta-G solvation = -23134.900957 eV Core-core repulsion = 20288.643489 eV Total energy + Delta-G solvation = -2846.257468 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22470 -37.61138 -36.35276 -34.46507 -32.97616 -31.68496 -30.31393 -28.56103 -27.60993 -26.01078 -25.00052 -23.64835 -22.44401 -21.58307 -20.41236 -19.10488 -18.41992 -17.13966 -16.76490 -16.41802 -15.86259 -15.40144 -15.11522 -14.81633 -14.71735 -14.51147 -14.39496 -13.90514 -13.83828 -13.14837 -13.12488 -13.06191 -12.82374 -12.79512 -12.59857 -12.55188 -12.46256 -12.17081 -11.94193 -11.79318 -11.64898 -11.59579 -11.51513 -11.33573 -11.26804 -11.04821 -10.85649 -10.76652 -10.64204 -10.33680 -8.62750 -8.04828 -6.15133 1.40370 1.41232 1.51938 2.45027 3.21503 3.68303 3.79211 3.89662 4.06869 4.19379 4.24796 4.31849 4.37750 4.42241 4.47904 4.52495 4.61271 4.63901 4.67927 4.71980 4.87034 4.90833 4.94976 5.00652 5.03228 5.09654 5.11931 5.16357 5.22171 5.28226 5.30556 5.37296 5.39046 5.41126 5.44707 5.50119 5.54700 5.59277 5.62362 5.67123 5.71069 5.75271 5.82331 5.95363 6.40198 6.82068 6.99847 7.11533 7.55008 8.98977 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.006251 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.938911 B = 4478.519273 C = 4861.345037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.222 3.778 4 H 0.006 0.994 5 C -0.511 4.511 6 H 0.048 0.952 7 C 0.009 3.991 8 N -0.921 5.921 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.694 5.694 14 C 0.087 3.913 15 H 0.043 0.957 16 C -0.104 4.104 17 C -0.107 4.107 18 C -0.117 4.117 19 C -0.112 4.112 20 C -0.112 4.112 21 C -0.064 4.064 22 H 0.067 0.933 23 C -0.097 4.097 24 C -0.138 4.138 25 C -0.158 4.158 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.048 0.952 29 H 0.063 0.937 30 H 0.028 0.972 31 H 0.258 0.742 32 H 0.338 0.662 33 H 0.024 0.976 34 H 0.041 0.959 35 H 0.056 0.944 36 H 0.068 0.932 37 H 0.048 0.952 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.064 0.936 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.069 0.931 48 H 0.041 0.959 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.076 5.396 11.489 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.181 4.181 3 C 0.113 3.887 4 H 0.024 0.976 5 C -0.550 4.550 6 H 0.066 0.934 7 C -0.189 4.189 8 N -0.561 5.561 9 Si 0.779 3.221 10 H -0.202 1.202 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.330 5.330 14 C -0.023 4.023 15 H 0.060 0.940 16 C -0.142 4.142 17 C -0.145 4.145 18 C -0.155 4.155 19 C -0.149 4.149 20 C -0.149 4.149 21 C -0.083 4.083 22 H 0.085 0.915 23 C -0.116 4.116 24 C -0.196 4.196 25 C -0.215 4.215 26 H 0.088 0.912 27 H 0.052 0.948 28 H 0.067 0.933 29 H 0.081 0.919 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.162 0.838 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.070 0.930 42 H 0.098 0.902 43 H 0.082 0.918 44 H 0.071 0.929 45 H 0.075 0.925 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.059 0.941 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.714 5.889 11.182 17.232 hybrid contribution 0.933 -1.064 -0.930 1.693 sum -10.781 4.825 10.253 15.641 Atomic orbital electron populations 1.22032 0.96815 1.00468 1.00824 1.22081 0.94140 1.01292 1.00627 1.18914 0.93503 0.88856 0.87390 0.97625 1.21571 0.93479 1.36116 1.03867 0.93355 1.25657 1.01909 0.95499 0.95844 1.70011 1.35889 1.40676 1.09569 0.85636 0.81166 0.78356 0.76908 1.20202 1.21099 1.19803 1.61010 1.27827 1.37954 1.06195 1.21518 0.90276 0.95316 0.95158 0.94002 1.21890 0.98184 0.96710 0.97402 1.21271 0.94092 0.97502 1.01636 1.21352 0.96716 1.00357 0.97073 1.20468 1.00437 0.99565 0.94467 1.20607 0.93565 0.99076 1.01648 1.20917 0.95220 0.99512 0.92670 0.91451 1.21133 1.00108 0.94897 0.95486 1.21825 1.02142 1.00517 0.95069 1.22127 1.02114 0.96102 1.01182 0.91235 0.94849 0.93262 0.91863 0.95322 0.93280 0.83791 0.95671 0.93983 0.92539 0.91348 0.93340 0.90773 0.90977 0.91568 0.93040 0.90195 0.91781 0.92942 0.92515 0.91374 0.91223 0.94054 0.92146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.70 8.61 71.98 0.62 -5.08 16 2 C -0.14 -6.82 4.98 30.60 0.15 -6.67 16 3 C 0.22 11.30 2.00 44.17 0.09 11.39 16 4 H 0.01 0.33 5.95 -2.39 -0.01 0.32 16 5 C -0.51 -29.21 8.84 25.60 0.23 -28.98 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 7 C 0.01 0.49 5.28 84.66 0.45 0.93 16 8 N -0.92 -54.28 11.29 21.45 0.24 -54.04 16 9 Si 0.95 45.34 29.54 68.60 2.03 47.37 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.69 -29.31 5.18 -475.66 -2.46 -31.77 16 14 C 0.09 3.00 0.99 44.46 0.04 3.05 16 15 H 0.04 1.50 2.82 -2.39 -0.01 1.49 16 16 C -0.10 -3.77 4.69 31.31 0.15 -3.63 16 17 C -0.11 -2.89 5.32 30.13 0.16 -2.73 16 18 C -0.12 -2.71 5.61 30.20 0.17 -2.55 16 19 C -0.11 -2.18 5.27 28.74 0.15 -2.03 16 20 C -0.11 -2.40 3.44 28.73 0.10 -2.30 16 21 C -0.06 -1.75 1.59 -11.19 -0.02 -1.77 16 22 H 0.07 1.88 6.99 -2.39 -0.02 1.86 16 23 C -0.10 -2.57 2.17 -10.79 -0.02 -2.59 16 24 C -0.14 -2.82 9.07 71.98 0.65 -2.17 16 25 C -0.16 -4.05 8.20 71.98 0.59 -3.46 16 26 H 0.07 2.45 3.84 -2.39 -0.01 2.44 16 27 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 29 H 0.06 3.50 5.91 -2.39 -0.01 3.49 16 30 H 0.03 1.34 7.95 -2.39 -0.02 1.32 16 31 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 32 H 0.34 13.50 3.49 -89.69 -0.31 13.19 16 33 H 0.02 1.04 6.82 -2.38 -0.02 1.03 16 34 H 0.04 1.70 8.12 -2.39 -0.02 1.68 16 35 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 36 H 0.07 1.69 6.63 -2.39 -0.02 1.67 16 37 H 0.05 1.29 6.98 -2.39 -0.02 1.28 16 38 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.07 1.20 7.46 -2.39 -0.02 1.19 16 41 H 0.05 1.20 6.71 -2.39 -0.02 1.18 16 42 H 0.08 1.44 5.93 -2.39 -0.01 1.43 16 43 H 0.06 2.06 6.47 -2.39 -0.02 2.05 16 44 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 46 H 0.07 1.18 6.15 -2.39 -0.01 1.16 16 47 H 0.07 1.55 6.43 -2.39 -0.02 1.53 16 48 H 0.04 1.27 3.99 -2.39 -0.01 1.26 16 49 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -61.04 333.27 3.92 -57.12 By element: Atomic # 1 Polarization: 29.29 SS G_CDS: 0.61 Total: 29.90 kcal Atomic # 6 Polarization: -52.08 SS G_CDS: 3.51 Total: -48.57 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -2.22 Total: -85.81 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -61.04 3.92 -57.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691154528.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.986 kcal (2) G-P(sol) polarization free energy of solvation -61.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds