Wall clock time and date at job start Mon Mar 30 2020 07:43:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46715 * 2 1 4 4 H 1.09003 * 109.47511 * 308.14201 * 3 2 1 5 5 C 1.50696 * 109.47216 * 188.14092 * 3 2 1 6 6 H 1.07997 * 120.00182 * 240.00147 * 5 3 2 7 7 C 1.37875 * 120.00294 * 59.99943 * 5 3 2 8 8 N 1.31521 * 119.99437 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00449 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47114 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47608 * 119.99957 * 9 7 5 12 12 H 1.48506 * 109.47181 * 240.00197 * 9 7 5 13 13 N 1.46904 * 109.47278 * 68.13920 * 3 2 1 14 14 C 1.46893 * 111.00388 * 265.06267 * 13 3 2 15 15 H 1.09003 * 108.69552 * 59.80850 * 14 13 3 16 16 C 1.54075 * 108.81187 * 301.45925 * 14 13 3 17 17 C 1.50473 * 112.41556 * 197.37396 * 16 14 13 18 18 C 1.54238 * 108.51529 * 94.20500 * 17 16 14 19 19 C 1.45541 * 112.40714 * 279.99460 * 18 17 16 20 20 C 1.54243 * 112.39947 * 61.93959 * 19 18 17 21 21 C 1.50466 * 108.52887 * 280.01960 * 20 19 18 22 22 H 1.09003 * 108.87759 * 333.36785 * 21 20 19 23 23 C 1.52996 * 108.87878 * 214.82488 * 21 20 19 24 24 C 1.53006 * 109.47231 * 62.49455 * 23 21 20 25 25 C 1.52998 * 109.47585 * 182.49591 * 23 21 20 26 26 H 1.08990 * 109.47193 * 293.51485 * 1 2 3 27 27 H 1.08994 * 109.47201 * 53.52040 * 1 2 3 28 28 H 1.09007 * 109.46464 * 173.51133 * 1 2 3 29 29 H 1.08999 * 109.47348 * 240.00097 * 2 1 3 30 30 H 1.09002 * 109.47169 * 119.99728 * 2 1 3 31 31 H 0.96999 * 119.99520 * 180.02562 * 8 7 5 32 32 H 1.00902 * 110.99766 * 29.01331 * 13 3 2 33 33 H 1.08994 * 108.87418 * 76.64585 * 16 14 13 34 34 H 1.08996 * 108.87281 * 318.09646 * 16 14 13 35 35 H 1.09001 * 109.62656 * 213.91198 * 17 16 14 36 36 H 1.09002 * 109.63608 * 334.49172 * 17 16 14 37 37 H 1.08998 * 108.89506 * 40.75514 * 18 17 16 38 38 H 1.09007 * 108.89028 * 159.24350 * 18 17 16 39 39 H 1.09003 * 108.89312 * 182.68957 * 19 18 17 40 40 H 1.08999 * 108.89935 * 301.28028 * 19 18 17 41 41 H 1.08998 * 109.62925 * 39.73584 * 20 19 18 42 42 H 1.09001 * 109.62186 * 160.30632 * 20 19 18 43 43 H 1.08999 * 109.47450 * 302.49865 * 23 21 20 44 44 H 1.08997 * 109.47016 * 61.33072 * 24 23 21 45 45 H 1.08997 * 109.47480 * 181.33957 * 24 23 21 46 46 H 1.09003 * 109.47058 * 301.33349 * 24 23 21 47 47 H 1.08995 * 109.47396 * 72.29937 * 25 23 21 48 48 H 1.09002 * 109.47219 * 192.30098 * 25 23 21 49 49 H 1.09007 * 109.46780 * 312.29857 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5627 1.9967 -0.8082 5 6 3.5334 1.4474 -0.2012 6 1 4.1782 1.8780 0.5506 7 6 4.0768 0.9021 -1.3450 8 7 3.2916 0.3781 -2.2608 9 14 5.9281 0.9075 -1.5941 10 1 6.5827 1.5513 -0.4270 11 1 6.4139 -0.4895 -1.7265 12 1 6.2594 1.6658 -2.8273 13 7 1.7170 2.0761 1.2854 14 6 0.4566 2.8258 1.2009 15 1 -0.3426 2.1362 0.9291 16 6 0.5870 3.8942 0.0984 17 6 -0.4634 4.9658 0.2108 18 6 0.1212 6.1417 1.0200 19 6 0.0904 5.8976 2.4544 20 6 0.9397 4.6759 2.8611 21 6 0.1460 3.4281 2.5837 22 1 -0.9162 3.6678 2.6318 23 6 0.4672 2.3879 3.6588 24 6 0.0361 2.9191 5.0274 25 6 -0.2856 1.0911 3.3549 26 1 -0.3633 0.4100 0.9422 27 1 -0.3633 0.6109 -0.8263 28 1 -0.3632 -1.0212 -0.1161 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.6738 -0.0058 -3.0653 32 1 1.6820 1.3925 2.0268 33 1 0.4948 3.4106 -0.8740 34 1 1.5715 4.3565 0.1702 35 1 -0.7434 5.3099 -0.7848 36 1 -1.3391 4.5680 0.7235 37 1 1.1539 6.3036 0.7114 38 1 -0.4554 7.0409 0.8025 39 1 0.4703 6.7792 2.9707 40 1 -0.9414 5.7264 2.7614 41 1 1.8613 4.6606 2.2792 42 1 1.1754 4.7314 3.9239 43 1 1.5395 2.1924 3.6664 44 1 -1.0400 3.0923 5.0273 45 1 0.2865 2.1882 5.7962 46 1 0.5548 3.8554 5.2336 47 1 0.1704 0.5991 2.4958 48 1 -0.2357 0.4306 4.2206 49 1 -1.3278 1.3197 3.1318 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000691154530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:42 Heat of formation + Delta-G solvation = -24.688287 kcal Electronic energy + Delta-G solvation = -23025.334873 eV Core-core repulsion = 20179.226818 eV Total energy + Delta-G solvation = -2846.108055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.69157 -36.09033 -35.26983 -32.57245 -31.20222 -30.51810 -28.82104 -27.51036 -25.97119 -24.24398 -23.41899 -22.31259 -20.44180 -20.09570 -19.71989 -17.80831 -16.41164 -15.59030 -15.14448 -14.84472 -14.70583 -14.13033 -13.65796 -13.47423 -13.21546 -13.05382 -12.87423 -12.57902 -12.30834 -12.08293 -11.70147 -11.46621 -11.45295 -11.29814 -11.15154 -10.90676 -10.82809 -10.73336 -10.59974 -10.39436 -10.15642 -10.06252 -10.00916 -9.96549 -9.79434 -9.66714 -9.55287 -9.28986 -8.85926 -8.23551 -6.96998 -5.90868 -3.93041 3.34673 3.42786 3.48088 4.49988 4.90145 4.97368 5.07218 5.23587 5.26931 5.38002 5.40380 5.45641 5.64208 5.71975 5.76521 5.81333 5.84096 5.89802 5.98261 6.02622 6.05492 6.11445 6.14766 6.18080 6.21441 6.30158 6.37737 6.43664 6.48275 6.51689 6.56950 6.60619 6.64012 6.70865 6.75320 6.84787 6.91247 6.93810 7.08129 7.13059 7.32262 7.56967 7.84264 7.99731 8.42285 8.73128 8.75541 9.15839 9.71858 11.15030 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.006532 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.590658 B = 4285.861095 C = 4751.459997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.149 4.149 3 C 0.212 3.788 4 H 0.039 0.961 5 C -0.486 4.486 6 H 0.061 0.939 7 C 0.053 3.947 8 N -0.898 5.898 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.287 1.287 13 N -0.682 5.682 14 C 0.093 3.907 15 H 0.030 0.970 16 C -0.110 4.110 17 C -0.113 4.113 18 C -0.116 4.116 19 C -0.114 4.114 20 C -0.114 4.114 21 C -0.067 4.067 22 H 0.056 0.944 23 C -0.098 4.098 24 C -0.146 4.146 25 C -0.160 4.160 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.031 0.969 29 H 0.098 0.902 30 H 0.029 0.971 31 H 0.257 0.743 32 H 0.326 0.674 33 H 0.058 0.942 34 H 0.073 0.927 35 H 0.055 0.945 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.047 0.953 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.048 0.952 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.711 6.492 9.548 14.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.188 4.188 3 C 0.104 3.896 4 H 0.057 0.943 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.147 4.147 8 N -0.539 5.539 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.213 1.213 13 N -0.316 5.316 14 C -0.017 4.017 15 H 0.048 0.952 16 C -0.148 4.148 17 C -0.151 4.151 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.151 4.151 21 C -0.085 4.085 22 H 0.074 0.926 23 C -0.116 4.116 24 C -0.203 4.203 25 C -0.217 4.217 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.050 0.950 29 H 0.116 0.884 30 H 0.048 0.952 31 H 0.067 0.933 32 H 0.146 0.854 33 H 0.077 0.923 34 H 0.092 0.908 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.098 0.902 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.076 0.924 47 H 0.088 0.912 48 H 0.067 0.933 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.294 6.957 9.259 14.244 hybrid contribution 0.281 -0.910 -0.347 1.014 sum -8.012 6.047 8.911 13.423 Atomic orbital electron populations 1.22138 0.99683 0.99371 1.00208 1.22266 0.91552 1.02468 1.02543 1.19284 0.95468 0.88577 0.86248 0.94279 1.21294 0.91825 1.35998 1.03396 0.92079 1.24948 0.97673 0.95879 0.96192 1.69890 1.34109 1.40626 1.09226 0.86543 0.86147 0.77380 0.77918 1.19839 1.21374 1.21330 1.60902 1.30617 1.31553 1.08486 1.21912 0.92353 0.94697 0.92755 0.95233 1.21387 0.99363 0.95791 0.98281 1.21324 0.98741 0.95941 0.99129 1.20481 1.01269 0.97737 0.95851 1.20463 0.99886 0.98339 0.96416 1.21462 0.99678 0.93106 1.00834 1.20994 0.98528 0.94666 0.94349 0.92578 1.21225 1.01212 0.94924 0.94258 1.21926 1.00741 1.00810 0.96852 1.22170 1.00230 0.97487 1.01857 0.93513 0.93783 0.95003 0.88377 0.95177 0.93325 0.85367 0.92336 0.90822 0.92639 0.92387 0.92052 0.93388 0.93174 0.92987 0.90232 0.92181 0.89848 0.93389 0.93320 0.92438 0.91154 0.93281 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.08 8.65 37.16 0.32 -2.75 16 2 C -0.15 -3.45 5.20 -26.73 -0.14 -3.59 16 3 C 0.21 5.08 1.91 -68.87 -0.13 4.95 16 4 H 0.04 1.03 5.55 -51.93 -0.29 0.74 16 5 C -0.49 -13.23 8.84 -34.44 -0.30 -13.54 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.05 1.45 5.28 -17.82 -0.09 1.36 16 8 N -0.90 -25.52 11.29 55.43 0.63 -24.89 16 9 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 N -0.68 -13.68 5.58 -99.82 -0.56 -14.23 16 14 C 0.09 1.59 1.34 -66.63 -0.09 1.51 16 15 H 0.03 0.53 4.79 -51.93 -0.25 0.28 16 16 C -0.11 -1.93 3.98 -27.43 -0.11 -2.04 16 17 C -0.11 -1.60 5.61 -27.35 -0.15 -1.76 16 18 C -0.12 -1.49 5.26 -29.60 -0.16 -1.64 16 19 C -0.11 -1.39 5.26 -29.60 -0.16 -1.54 16 20 C -0.11 -1.56 4.98 -27.35 -0.14 -1.70 16 21 C -0.07 -0.95 1.13 -91.37 -0.10 -1.05 16 22 H 0.06 0.77 6.63 -51.93 -0.34 0.43 16 23 C -0.10 -1.33 1.84 -90.62 -0.17 -1.49 16 24 C -0.15 -1.67 8.94 37.16 0.33 -1.34 16 25 C -0.16 -2.18 7.95 37.16 0.30 -1.89 16 26 H 0.05 0.82 3.36 -51.93 -0.17 0.65 16 27 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.10 2.61 5.90 -51.93 -0.31 2.30 16 30 H 0.03 0.68 7.95 -51.93 -0.41 0.27 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 32 H 0.33 6.31 4.16 -39.29 -0.16 6.15 16 33 H 0.06 1.15 6.64 -51.93 -0.35 0.81 16 34 H 0.07 1.42 6.61 -51.93 -0.34 1.08 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.79 6.97 -51.93 -0.36 0.43 16 37 H 0.06 0.85 7.47 -51.93 -0.39 0.46 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.61 7.47 -51.93 -0.39 0.22 16 41 H 0.08 1.29 6.98 -51.93 -0.36 0.93 16 42 H 0.06 0.76 5.57 -51.93 -0.29 0.47 16 43 H 0.08 1.28 6.83 -51.93 -0.35 0.92 16 44 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.63 6.05 -51.93 -0.31 0.32 16 47 H 0.07 1.09 3.51 -51.93 -0.18 0.91 16 48 H 0.05 0.60 8.09 -51.93 -0.42 0.18 16 49 H 0.05 0.64 8.09 -51.93 -0.42 0.22 16 LS Contribution 335.61 15.07 5.06 5.06 Total: -1.00 -26.85 335.61 -9.29 -36.14 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -8.61 Total: 7.87 kcal Atomic # 6 Polarization: -25.73 SS G_CDS: -0.79 Total: -26.52 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.07 Total: -39.13 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -26.85 -9.29 -36.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691154530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.456 kcal (2) G-P(sol) polarization free energy of solvation -26.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds