Wall clock time and date at job start Mon Mar 30 2020 07:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46715 * 2 1 4 4 H 1.09003 * 109.47511 * 308.14201 * 3 2 1 5 5 C 1.50696 * 109.47216 * 188.14092 * 3 2 1 6 6 H 1.07997 * 120.00182 * 240.00147 * 5 3 2 7 7 C 1.37875 * 120.00294 * 59.99943 * 5 3 2 8 8 N 1.31521 * 119.99437 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 120.00449 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47114 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47608 * 119.99957 * 9 7 5 12 12 H 1.48506 * 109.47181 * 240.00197 * 9 7 5 13 13 N 1.46904 * 109.47278 * 68.13920 * 3 2 1 14 14 C 1.46893 * 111.00388 * 265.06267 * 13 3 2 15 15 H 1.09003 * 108.69552 * 59.80850 * 14 13 3 16 16 C 1.54075 * 108.81187 * 301.45925 * 14 13 3 17 17 C 1.50473 * 112.41556 * 197.37396 * 16 14 13 18 18 C 1.54238 * 108.51529 * 94.20500 * 17 16 14 19 19 C 1.45541 * 112.40714 * 279.99460 * 18 17 16 20 20 C 1.54243 * 112.39947 * 61.93959 * 19 18 17 21 21 C 1.50466 * 108.52887 * 280.01960 * 20 19 18 22 22 H 1.09003 * 108.87759 * 333.36785 * 21 20 19 23 23 C 1.52996 * 108.87878 * 214.82488 * 21 20 19 24 24 C 1.53006 * 109.47231 * 62.49455 * 23 21 20 25 25 C 1.52998 * 109.47585 * 182.49591 * 23 21 20 26 26 H 1.08990 * 109.47193 * 293.51485 * 1 2 3 27 27 H 1.08994 * 109.47201 * 53.52040 * 1 2 3 28 28 H 1.09007 * 109.46464 * 173.51133 * 1 2 3 29 29 H 1.08999 * 109.47348 * 240.00097 * 2 1 3 30 30 H 1.09002 * 109.47169 * 119.99728 * 2 1 3 31 31 H 0.96999 * 119.99520 * 180.02562 * 8 7 5 32 32 H 1.00902 * 110.99766 * 29.01331 * 13 3 2 33 33 H 1.08994 * 108.87418 * 76.64585 * 16 14 13 34 34 H 1.08996 * 108.87281 * 318.09646 * 16 14 13 35 35 H 1.09001 * 109.62656 * 213.91198 * 17 16 14 36 36 H 1.09002 * 109.63608 * 334.49172 * 17 16 14 37 37 H 1.08998 * 108.89506 * 40.75514 * 18 17 16 38 38 H 1.09007 * 108.89028 * 159.24350 * 18 17 16 39 39 H 1.09003 * 108.89312 * 182.68957 * 19 18 17 40 40 H 1.08999 * 108.89935 * 301.28028 * 19 18 17 41 41 H 1.08998 * 109.62925 * 39.73584 * 20 19 18 42 42 H 1.09001 * 109.62186 * 160.30632 * 20 19 18 43 43 H 1.08999 * 109.47450 * 302.49865 * 23 21 20 44 44 H 1.08997 * 109.47016 * 61.33072 * 24 23 21 45 45 H 1.08997 * 109.47480 * 181.33957 * 24 23 21 46 46 H 1.09003 * 109.47058 * 301.33349 * 24 23 21 47 47 H 1.08995 * 109.47396 * 72.29937 * 25 23 21 48 48 H 1.09002 * 109.47219 * 192.30098 * 25 23 21 49 49 H 1.09007 * 109.46780 * 312.29857 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5627 1.9967 -0.8082 5 6 3.5334 1.4474 -0.2012 6 1 4.1782 1.8780 0.5506 7 6 4.0768 0.9021 -1.3450 8 7 3.2916 0.3781 -2.2608 9 14 5.9281 0.9075 -1.5941 10 1 6.5827 1.5513 -0.4270 11 1 6.4139 -0.4895 -1.7265 12 1 6.2594 1.6658 -2.8273 13 7 1.7170 2.0761 1.2854 14 6 0.4566 2.8258 1.2009 15 1 -0.3426 2.1362 0.9291 16 6 0.5870 3.8942 0.0984 17 6 -0.4634 4.9658 0.2108 18 6 0.1212 6.1417 1.0200 19 6 0.0904 5.8976 2.4544 20 6 0.9397 4.6759 2.8611 21 6 0.1460 3.4281 2.5837 22 1 -0.9162 3.6678 2.6318 23 6 0.4672 2.3879 3.6588 24 6 0.0361 2.9191 5.0274 25 6 -0.2856 1.0911 3.3549 26 1 -0.3633 0.4100 0.9422 27 1 -0.3633 0.6109 -0.8263 28 1 -0.3632 -1.0212 -0.1161 29 1 1.8935 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.6738 -0.0058 -3.0653 32 1 1.6820 1.3925 2.0268 33 1 0.4948 3.4106 -0.8740 34 1 1.5715 4.3565 0.1702 35 1 -0.7434 5.3099 -0.7848 36 1 -1.3391 4.5680 0.7235 37 1 1.1539 6.3036 0.7114 38 1 -0.4554 7.0409 0.8025 39 1 0.4703 6.7792 2.9707 40 1 -0.9414 5.7264 2.7614 41 1 1.8613 4.6606 2.2792 42 1 1.1754 4.7314 3.9239 43 1 1.5395 2.1924 3.6664 44 1 -1.0400 3.0923 5.0273 45 1 0.2865 2.1882 5.7962 46 1 0.5548 3.8554 5.2336 47 1 0.1704 0.5991 2.4958 48 1 -0.2357 0.4306 4.2206 49 1 -1.3278 1.3197 3.1318 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000691154530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:41 Heat of formation + Delta-G solvation = -38.072674 kcal Electronic energy + Delta-G solvation = -23025.915264 eV Core-core repulsion = 20179.226818 eV Total energy + Delta-G solvation = -2846.688446 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97727 -37.65217 -36.47297 -34.41465 -32.86510 -31.75280 -30.31202 -28.84578 -27.54410 -25.44009 -25.02537 -23.87764 -21.66095 -21.52317 -21.15187 -19.15253 -18.39799 -16.88597 -16.72018 -16.60855 -15.79165 -15.72882 -14.98205 -14.88465 -14.58106 -14.45006 -14.18337 -13.98666 -13.67161 -13.22395 -13.12392 -13.03994 -12.90924 -12.69173 -12.61917 -12.52382 -12.46321 -12.19400 -12.00142 -11.83947 -11.74352 -11.47859 -11.42342 -11.25651 -11.18236 -11.07069 -10.94576 -10.70432 -10.64827 -10.32609 -8.66073 -8.03204 -6.12925 1.39162 1.41580 1.53167 2.45772 3.22850 3.69997 3.85454 3.90200 4.02263 4.18479 4.21982 4.28649 4.37510 4.47571 4.56538 4.57715 4.59850 4.63551 4.72426 4.76743 4.85178 4.88463 4.92238 5.04622 5.06092 5.07319 5.08343 5.17109 5.24261 5.32729 5.34541 5.38300 5.40390 5.44908 5.49372 5.52280 5.55116 5.60855 5.63523 5.68602 5.71170 5.78408 5.88744 5.95399 6.42439 6.83341 7.01787 7.10907 7.56843 9.00336 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.006532 C = 0.005892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.590658 B = 4285.861095 C = 4751.459997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.142 4.142 3 C 0.221 3.779 4 H 0.011 0.989 5 C -0.504 4.504 6 H 0.048 0.952 7 C 0.007 3.993 8 N -0.922 5.922 9 Si 0.951 3.049 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.284 1.284 13 N -0.683 5.683 14 C 0.096 3.904 15 H 0.026 0.974 16 C -0.103 4.103 17 C -0.108 4.108 18 C -0.113 4.113 19 C -0.111 4.111 20 C -0.112 4.112 21 C -0.059 4.059 22 H 0.073 0.927 23 C -0.097 4.097 24 C -0.140 4.140 25 C -0.158 4.158 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.029 0.971 31 H 0.257 0.743 32 H 0.331 0.669 33 H 0.024 0.976 34 H 0.046 0.954 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.046 0.954 48 H 0.062 0.938 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.061 7.435 11.524 17.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.182 4.182 3 C 0.112 3.888 4 H 0.029 0.971 5 C -0.543 4.543 6 H 0.066 0.934 7 C -0.190 4.190 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.316 5.316 14 C -0.014 4.014 15 H 0.044 0.956 16 C -0.141 4.141 17 C -0.146 4.146 18 C -0.150 4.150 19 C -0.148 4.148 20 C -0.149 4.149 21 C -0.078 4.078 22 H 0.091 0.909 23 C -0.116 4.116 24 C -0.197 4.197 25 C -0.215 4.215 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.066 0.934 32 H 0.152 0.848 33 H 0.043 0.957 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -9.649 7.905 11.248 16.796 hybrid contribution 0.714 -1.204 -0.971 1.703 sum -8.935 6.702 10.277 15.178 Atomic orbital electron populations 1.22002 0.96814 1.00390 1.01008 1.22078 0.94130 1.01299 1.00672 1.18982 0.93611 0.88969 0.87226 0.97146 1.21603 0.93591 1.35885 1.03262 0.93391 1.25640 1.01639 0.95673 0.96034 1.70021 1.35621 1.41140 1.09491 0.85615 0.81443 0.77461 0.77721 1.19576 1.20792 1.21045 1.60792 1.32799 1.31322 1.06718 1.21982 0.90591 0.94146 0.94713 0.95649 1.21315 0.99344 0.96596 0.96815 1.21290 0.97898 0.95323 1.00106 1.20450 1.00492 0.97852 0.96201 1.20444 1.00456 0.98051 0.95841 1.21428 0.98495 0.93771 1.01189 1.20952 0.99482 0.95016 0.92335 0.90855 1.21189 0.99957 0.94869 0.95535 1.21861 1.01508 1.01127 0.95178 1.22132 1.00459 0.97519 1.01429 0.91258 0.94880 0.93386 0.91844 0.95259 0.93365 0.84795 0.95699 0.93472 0.92174 0.91017 0.93789 0.91113 0.91608 0.91326 0.93494 0.90725 0.92041 0.92154 0.92540 0.91912 0.93536 0.91907 0.92268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.70 8.65 71.99 0.62 -5.08 16 2 C -0.14 -6.79 5.20 30.60 0.16 -6.63 16 3 C 0.22 11.05 1.91 44.17 0.08 11.14 16 4 H 0.01 0.60 5.55 -2.39 -0.01 0.58 16 5 C -0.50 -28.52 8.84 25.60 0.23 -28.29 16 6 H 0.05 2.77 7.81 -2.91 -0.02 2.75 16 7 C 0.01 0.42 5.28 84.65 0.45 0.87 16 8 N -0.92 -54.11 11.29 21.45 0.24 -53.86 16 9 Si 0.95 45.30 29.54 68.60 2.03 47.32 16 10 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 11 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 12 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 13 N -0.68 -28.17 5.58 -469.73 -2.62 -30.79 16 14 C 0.10 3.28 1.34 45.62 0.06 3.34 16 15 H 0.03 0.91 4.79 -2.39 -0.01 0.90 16 16 C -0.10 -3.72 3.98 30.14 0.12 -3.60 16 17 C -0.11 -2.95 5.61 30.20 0.17 -2.78 16 18 C -0.11 -2.68 5.26 28.74 0.15 -2.53 16 19 C -0.11 -2.37 5.26 28.74 0.15 -2.22 16 20 C -0.11 -2.88 4.98 30.20 0.15 -2.73 16 21 C -0.06 -1.58 1.13 -11.28 -0.01 -1.59 16 22 H 0.07 1.76 6.63 -2.39 -0.02 1.74 16 23 C -0.10 -2.44 1.84 -10.79 -0.02 -2.46 16 24 C -0.14 -2.72 8.94 71.98 0.64 -2.08 16 25 C -0.16 -3.97 7.95 71.98 0.57 -3.39 16 26 H 0.07 2.39 3.36 -2.39 -0.01 2.39 16 27 H 0.03 1.34 8.11 -2.39 -0.02 1.32 16 28 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 29 H 0.06 3.50 5.90 -2.39 -0.01 3.48 16 30 H 0.03 1.36 7.95 -2.39 -0.02 1.34 16 31 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 32 H 0.33 13.02 4.16 -89.69 -0.37 12.65 16 33 H 0.02 1.03 6.64 -2.39 -0.02 1.02 16 34 H 0.05 1.93 6.61 -2.39 -0.02 1.91 16 35 H 0.06 1.57 8.14 -2.39 -0.02 1.56 16 36 H 0.07 1.77 6.97 -2.39 -0.02 1.75 16 37 H 0.04 1.20 7.47 -2.39 -0.02 1.18 16 38 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.07 1.29 7.47 -2.39 -0.02 1.28 16 41 H 0.05 1.53 6.98 -2.39 -0.02 1.51 16 42 H 0.07 1.71 5.57 -2.39 -0.01 1.70 16 43 H 0.06 1.83 6.83 -2.39 -0.02 1.82 16 44 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 45 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 46 H 0.06 1.16 6.05 -2.39 -0.01 1.15 16 47 H 0.05 1.38 3.51 -2.39 -0.01 1.38 16 48 H 0.06 1.39 8.09 -2.39 -0.02 1.37 16 49 H 0.06 1.36 8.09 -2.38 -0.02 1.34 16 Total: -1.00 -60.04 335.61 3.72 -56.32 By element: Atomic # 1 Polarization: 28.49 SS G_CDS: 0.55 Total: 29.04 kcal Atomic # 6 Polarization: -51.56 SS G_CDS: 3.53 Total: -48.03 kcal Atomic # 7 Polarization: -82.27 SS G_CDS: -2.38 Total: -84.65 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 2.03 Total: 47.32 kcal Total: -60.04 3.72 -56.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000691154530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.247 kcal (2) G-P(sol) polarization free energy of solvation -60.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.320 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds