Wall clock time and date at job start Mon Mar 30 2020 08:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52823 * 1 3 3 H 1.11035 * 106.75328 * 2 1 4 4 C 1.52236 * 110.62584 * 116.21488 * 2 1 3 5 5 C 1.52761 * 110.74963 * 73.56722 * 4 2 1 6 6 H 1.08697 * 110.36360 * 299.82035 * 5 4 2 7 7 C 1.53338 * 109.13891 * 180.18790 * 5 4 2 8 8 N 1.46897 * 109.47473 * 174.99972 * 7 5 4 9 9 C 1.46897 * 111.00414 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47571 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47154 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46875 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47168 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00144 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00399 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99542 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00484 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46906 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47212 * 119.99852 * 17 15 13 20 20 H 1.48494 * 109.47332 * 239.99915 * 17 15 13 21 21 C 1.52756 * 108.91592 * 61.12436 * 5 4 2 22 22 C 1.52230 * 110.77303 * 298.93480 * 21 5 4 23 23 H 1.11037 * 107.10889 * 170.33368 * 22 21 5 24 24 C 1.52824 * 110.62590 * 286.30366 * 22 21 5 25 25 C 1.51642 * 112.96279 * 52.21833 * 22 21 5 26 26 H 1.08998 * 109.47056 * 177.14857 * 1 2 3 27 27 H 1.08997 * 109.47060 * 297.14501 * 1 2 3 28 28 H 1.08997 * 109.46920 * 57.15159 * 1 2 3 29 29 H 1.09315 * 109.55975 * 194.11626 * 4 2 1 30 30 H 1.09328 * 109.53992 * 313.06306 * 4 2 1 31 31 H 1.09003 * 109.46804 * 295.00391 * 7 5 4 32 32 H 1.09004 * 109.46635 * 54.99902 * 7 5 4 33 33 H 1.00906 * 110.99908 * 56.04805 * 8 7 5 34 34 H 1.09006 * 109.47303 * 300.00603 * 9 8 7 35 35 H 1.09001 * 109.47085 * 59.99872 * 9 8 7 36 36 H 1.09009 * 109.46819 * 299.99987 * 10 9 8 37 37 H 1.09001 * 109.47257 * 59.99688 * 10 9 8 38 38 H 1.08999 * 109.46965 * 299.99610 * 11 10 9 39 39 H 1.09002 * 109.47036 * 60.00044 * 11 10 9 40 40 H 1.08999 * 109.47208 * 299.99710 * 12 11 10 41 41 H 1.09001 * 109.47193 * 59.99767 * 12 11 10 42 42 H 0.97003 * 119.99685 * 179.97438 * 16 15 13 43 43 H 1.09324 * 109.22645 * 59.70136 * 21 5 4 44 44 H 1.09338 * 109.18619 * 178.22953 * 21 5 4 45 45 H 1.09000 * 109.47542 * 186.67908 * 24 22 21 46 46 H 1.09010 * 109.47000 * 306.67798 * 24 22 21 47 47 H 1.09006 * 109.47123 * 66.67097 * 24 22 21 48 48 H 1.10194 * 108.76026 * 193.76616 * 25 22 21 49 49 H 1.10213 * 108.69249 * 78.67996 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5282 0.0000 0.0000 3 1 1.8483 1.0632 0.0000 4 6 2.0645 -0.6294 1.2782 5 6 1.8769 -2.1453 1.2551 6 1 0.8224 -2.3946 1.1700 7 6 2.4240 -2.7395 2.5585 8 7 2.1401 -4.1802 2.5970 9 6 2.6505 -4.7845 3.8348 10 6 2.3372 -6.2821 3.8382 11 6 2.8683 -6.9113 5.1277 12 6 2.5544 -8.4088 5.1313 13 6 3.0780 -9.0288 6.4012 14 1 3.5844 -8.4161 7.1323 15 6 2.9116 -10.3783 6.6292 16 7 2.2953 -11.1245 5.7386 17 14 3.5612 -11.1469 8.2028 18 1 4.2092 -10.1006 9.0339 19 1 2.4359 -11.7525 8.9592 20 1 4.5545 -12.1984 7.8668 21 6 2.6567 -2.7228 0.0753 22 6 2.1405 -2.1587 -1.2410 23 1 2.8523 -2.4737 -2.0329 24 6 0.7870 -2.7730 -1.5961 25 6 2.0865 -0.6433 -1.2546 26 1 -0.3633 -1.0264 -0.0511 27 1 -0.3633 0.4689 0.9145 28 1 -0.3633 0.5574 -0.8633 29 1 3.1284 -0.3999 1.3808 30 1 1.5349 -0.2147 2.1401 31 1 3.5013 -2.5799 2.6065 32 1 1.9464 -2.2521 3.4085 33 1 2.5177 -4.6450 1.7849 34 1 3.7293 -4.6392 3.8922 35 1 2.1741 -4.3114 4.6935 36 1 1.2584 -6.4277 3.7807 37 1 2.8139 -6.7550 2.9796 38 1 3.9470 -6.7657 5.1856 39 1 2.3911 -6.4384 5.9861 40 1 1.4757 -8.5541 5.0737 41 1 3.0312 -8.8820 4.2729 42 1 2.1786 -12.0740 5.8988 43 1 3.7158 -2.4767 0.1888 44 1 2.5513 -3.8111 0.0731 45 1 0.4910 -2.4484 -2.5936 46 1 0.8649 -3.8602 -1.5760 47 1 0.0397 -2.4490 -0.8717 48 1 1.4838 -0.3180 -2.1179 49 1 3.1033 -0.2552 -1.4282 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695353635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:24 Heat of formation + Delta-G solvation = -62.885550 kcal Electronic energy + Delta-G solvation = -20442.968001 eV Core-core repulsion = 17595.203588 eV Total energy + Delta-G solvation = -2847.764413 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.73329 -36.67526 -34.41879 -33.29908 -32.70896 -31.28139 -28.22073 -27.55942 -26.45034 -25.36562 -23.65671 -21.68887 -21.11931 -21.07946 -19.90390 -18.24525 -16.36399 -16.07445 -15.81501 -14.91822 -14.62016 -14.55811 -14.39253 -14.28817 -14.05059 -13.63448 -13.36440 -12.91544 -12.68706 -12.38777 -12.35136 -12.02017 -11.85652 -11.62929 -11.46617 -11.34841 -11.27071 -11.08121 -10.97018 -10.94980 -10.52355 -10.47808 -10.39970 -10.33581 -10.12174 -9.96151 -9.59324 -9.21628 -8.95600 -8.32009 -8.29242 -5.95464 -3.97452 3.33387 3.40561 3.45000 4.18462 4.37852 4.41528 4.47261 4.50967 4.87524 4.92000 4.96570 5.01204 5.06863 5.16184 5.37033 5.39957 5.41491 5.43417 5.48461 5.49468 5.54967 5.62544 5.65287 5.72529 5.75131 5.77509 5.79661 5.87784 5.94073 5.96320 6.08364 6.12230 6.16738 6.20290 6.28105 6.31749 6.37411 6.56285 6.87146 7.01047 7.11179 7.28633 7.49239 7.74401 7.90421 8.06118 8.49050 9.10379 9.66288 11.15977 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.043511 B = 0.002443 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.366208 B =11459.918851 C =11753.013890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.083 4.083 3 H 0.057 0.943 4 C -0.106 4.106 5 C -0.083 4.083 6 H 0.083 0.917 7 C 0.061 3.939 8 N -0.691 5.691 9 C 0.059 3.941 10 C -0.115 4.115 11 C -0.109 4.109 12 C 0.020 3.980 13 C -0.519 4.519 14 H 0.054 0.946 15 C 0.054 3.946 16 N -0.896 5.896 17 Si 0.891 3.109 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.109 4.109 22 C -0.083 4.083 23 H 0.057 0.943 24 C -0.150 4.150 25 C -0.102 4.102 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.025 0.975 32 H 0.069 0.931 33 H 0.338 0.662 34 H 0.024 0.976 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.014 0.986 42 H 0.259 0.741 43 H 0.056 0.944 44 H 0.065 0.935 45 H 0.049 0.951 46 H 0.055 0.945 47 H 0.061 0.939 48 H 0.058 0.942 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.310 23.402 -14.805 27.723 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.102 4.102 3 H 0.076 0.924 4 C -0.144 4.144 5 C -0.101 4.101 6 H 0.101 0.899 7 C -0.069 4.069 8 N -0.323 5.323 9 C -0.069 4.069 10 C -0.153 4.153 11 C -0.147 4.147 12 C -0.017 4.017 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.719 3.281 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.147 4.147 22 C -0.102 4.102 23 H 0.076 0.924 24 C -0.207 4.207 25 C -0.140 4.140 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.043 0.957 32 H 0.087 0.913 33 H 0.156 0.844 34 H 0.042 0.958 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.069 0.931 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.075 0.925 47 H 0.080 0.920 48 H 0.076 0.924 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.979 23.322 -14.596 27.584 hybrid contribution 1.371 -0.534 0.670 1.617 sum -0.608 22.788 -13.926 26.713 Atomic orbital electron populations 1.21959 0.95236 1.02318 1.01273 1.20755 0.95766 0.99044 0.94594 0.92448 1.21422 1.00897 0.95090 0.96994 1.21045 1.01110 0.94232 0.93734 0.89854 1.22096 0.97754 0.89194 0.97810 1.60536 1.64027 1.02574 1.05137 1.22064 0.96719 0.96187 0.91978 1.21636 1.01755 0.92476 0.99469 1.21587 0.99141 0.99263 0.94697 1.19099 0.96902 0.88837 0.96823 1.21334 1.36602 0.93395 1.04361 0.92737 1.25042 0.95439 0.97464 0.96674 1.69985 1.42826 1.06018 1.34764 0.86554 0.78650 0.79258 0.83648 1.19781 1.21025 1.21054 1.21491 0.99083 1.00254 0.93861 1.20751 0.97561 0.94577 0.97304 0.92418 1.21953 0.97147 1.00692 1.00924 1.21182 1.00805 0.94771 0.97216 0.91888 0.92823 0.93062 0.92331 0.91975 0.95728 0.91285 0.84354 0.95754 0.91379 0.91675 0.92843 0.93730 0.93467 0.96595 0.96749 0.93124 0.92532 0.91635 0.93153 0.92543 0.92016 0.92374 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.91 37.07 0.33 -0.73 16 2 C -0.08 -0.60 2.62 -91.79 -0.24 -0.84 16 3 H 0.06 0.39 8.29 -50.76 -0.42 -0.03 16 4 C -0.11 -0.84 4.58 -27.24 -0.12 -0.97 16 5 C -0.08 -0.75 2.24 -90.69 -0.20 -0.95 16 6 H 0.08 0.85 6.53 -52.10 -0.34 0.51 16 7 C 0.06 0.66 5.12 -3.65 -0.02 0.64 16 8 N -0.69 -8.87 6.50 -113.59 -0.74 -9.61 16 9 C 0.06 0.87 5.69 -3.83 -0.02 0.85 16 10 C -0.12 -2.03 5.47 -26.73 -0.15 -2.18 16 11 C -0.11 -2.31 5.15 -26.73 -0.14 -2.44 16 12 C 0.02 0.55 4.97 -27.88 -0.14 0.41 16 13 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 14 H 0.05 1.55 7.74 -52.49 -0.41 1.14 16 15 C 0.05 1.60 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 17 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C -0.11 -0.95 4.40 -27.25 -0.12 -1.07 16 22 C -0.08 -0.65 2.62 -91.79 -0.24 -0.89 16 23 H 0.06 0.44 8.29 -50.76 -0.42 0.02 16 24 C -0.15 -1.18 8.91 37.07 0.33 -0.85 16 25 C -0.10 -0.73 4.78 -28.10 -0.13 -0.87 16 26 H 0.06 0.48 4.78 -51.93 -0.25 0.23 16 27 H 0.05 0.37 8.10 -51.93 -0.42 -0.05 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.47 8.17 -51.75 -0.42 0.04 16 30 H 0.06 0.49 8.09 -51.74 -0.42 0.07 16 31 H 0.02 0.27 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.34 4.12 6.98 -39.29 -0.27 3.84 16 34 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.47 8.31 -40.82 -0.34 7.14 16 43 H 0.06 0.50 8.17 -51.75 -0.42 0.07 16 44 H 0.07 0.61 6.57 -51.74 -0.34 0.27 16 45 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 46 H 0.06 0.46 8.10 -51.92 -0.42 0.04 16 47 H 0.06 0.50 4.79 -51.93 -0.25 0.25 16 48 H 0.06 0.39 7.98 -51.25 -0.41 -0.01 16 49 H 0.05 0.37 8.24 -51.24 -0.42 -0.05 16 LS Contribution 367.50 15.07 5.54 5.54 Total: -1.00 -30.00 367.50 -10.60 -40.61 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -9.84 Total: -2.92 kcal Atomic # 6 Polarization: -22.55 SS G_CDS: -1.28 Total: -23.82 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: 0.00 Total: -36.45 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.00 -10.60 -40.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695353635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.279 kcal (2) G-P(sol) polarization free energy of solvation -30.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds