Wall clock time and date at job start Mon Mar 30 2020 08:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52823 * 1 3 3 H 1.11035 * 106.75328 * 2 1 4 4 C 1.52236 * 110.62584 * 116.21488 * 2 1 3 5 5 C 1.52761 * 110.74963 * 73.56722 * 4 2 1 6 6 H 1.08697 * 110.36360 * 299.82035 * 5 4 2 7 7 C 1.53338 * 109.13891 * 180.18790 * 5 4 2 8 8 N 1.46897 * 109.47473 * 174.99972 * 7 5 4 9 9 C 1.46897 * 111.00414 * 180.02562 * 8 7 5 10 10 C 1.52998 * 109.47571 * 180.02562 * 9 8 7 11 11 C 1.52998 * 109.47154 * 180.02562 * 10 9 8 12 12 C 1.53001 * 109.46875 * 179.97438 * 11 10 9 13 13 C 1.50699 * 109.47168 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00144 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00399 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99542 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00484 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46906 * 0.02562 * 17 15 13 19 19 H 1.48501 * 109.47212 * 119.99852 * 17 15 13 20 20 H 1.48494 * 109.47332 * 239.99915 * 17 15 13 21 21 C 1.52756 * 108.91592 * 61.12436 * 5 4 2 22 22 C 1.52230 * 110.77303 * 298.93480 * 21 5 4 23 23 H 1.11037 * 107.10889 * 170.33368 * 22 21 5 24 24 C 1.52824 * 110.62590 * 286.30366 * 22 21 5 25 25 C 1.51642 * 112.96279 * 52.21833 * 22 21 5 26 26 H 1.08998 * 109.47056 * 177.14857 * 1 2 3 27 27 H 1.08997 * 109.47060 * 297.14501 * 1 2 3 28 28 H 1.08997 * 109.46920 * 57.15159 * 1 2 3 29 29 H 1.09315 * 109.55975 * 194.11626 * 4 2 1 30 30 H 1.09328 * 109.53992 * 313.06306 * 4 2 1 31 31 H 1.09003 * 109.46804 * 295.00391 * 7 5 4 32 32 H 1.09004 * 109.46635 * 54.99902 * 7 5 4 33 33 H 1.00906 * 110.99908 * 56.04805 * 8 7 5 34 34 H 1.09006 * 109.47303 * 300.00603 * 9 8 7 35 35 H 1.09001 * 109.47085 * 59.99872 * 9 8 7 36 36 H 1.09009 * 109.46819 * 299.99987 * 10 9 8 37 37 H 1.09001 * 109.47257 * 59.99688 * 10 9 8 38 38 H 1.08999 * 109.46965 * 299.99610 * 11 10 9 39 39 H 1.09002 * 109.47036 * 60.00044 * 11 10 9 40 40 H 1.08999 * 109.47208 * 299.99710 * 12 11 10 41 41 H 1.09001 * 109.47193 * 59.99767 * 12 11 10 42 42 H 0.97003 * 119.99685 * 179.97438 * 16 15 13 43 43 H 1.09324 * 109.22645 * 59.70136 * 21 5 4 44 44 H 1.09338 * 109.18619 * 178.22953 * 21 5 4 45 45 H 1.09000 * 109.47542 * 186.67908 * 24 22 21 46 46 H 1.09010 * 109.47000 * 306.67798 * 24 22 21 47 47 H 1.09006 * 109.47123 * 66.67097 * 24 22 21 48 48 H 1.10194 * 108.76026 * 193.76616 * 25 22 21 49 49 H 1.10213 * 108.69249 * 78.67996 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5282 0.0000 0.0000 3 1 1.8483 1.0632 0.0000 4 6 2.0645 -0.6294 1.2782 5 6 1.8769 -2.1453 1.2551 6 1 0.8224 -2.3946 1.1700 7 6 2.4240 -2.7395 2.5585 8 7 2.1401 -4.1802 2.5970 9 6 2.6505 -4.7845 3.8348 10 6 2.3372 -6.2821 3.8382 11 6 2.8683 -6.9113 5.1277 12 6 2.5544 -8.4088 5.1313 13 6 3.0780 -9.0288 6.4012 14 1 3.5844 -8.4161 7.1323 15 6 2.9116 -10.3783 6.6292 16 7 2.2953 -11.1245 5.7386 17 14 3.5612 -11.1469 8.2028 18 1 4.2092 -10.1006 9.0339 19 1 2.4359 -11.7525 8.9592 20 1 4.5545 -12.1984 7.8668 21 6 2.6567 -2.7228 0.0753 22 6 2.1405 -2.1587 -1.2410 23 1 2.8523 -2.4737 -2.0329 24 6 0.7870 -2.7730 -1.5961 25 6 2.0865 -0.6433 -1.2546 26 1 -0.3633 -1.0264 -0.0511 27 1 -0.3633 0.4689 0.9145 28 1 -0.3633 0.5574 -0.8633 29 1 3.1284 -0.3999 1.3808 30 1 1.5349 -0.2147 2.1401 31 1 3.5013 -2.5799 2.6065 32 1 1.9464 -2.2521 3.4085 33 1 2.5177 -4.6450 1.7849 34 1 3.7293 -4.6392 3.8922 35 1 2.1741 -4.3114 4.6935 36 1 1.2584 -6.4277 3.7807 37 1 2.8139 -6.7550 2.9796 38 1 3.9470 -6.7657 5.1856 39 1 2.3911 -6.4384 5.9861 40 1 1.4757 -8.5541 5.0737 41 1 3.0312 -8.8820 4.2729 42 1 2.1786 -12.0740 5.8988 43 1 3.7158 -2.4767 0.1888 44 1 2.5513 -3.8111 0.0731 45 1 0.4910 -2.4484 -2.5936 46 1 0.8649 -3.8602 -1.5760 47 1 0.0397 -2.4490 -0.8717 48 1 1.4838 -0.3180 -2.1179 49 1 3.1033 -0.2552 -1.4282 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695353635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:23 Heat of formation + Delta-G solvation = -78.213812 kcal Electronic energy + Delta-G solvation = -20443.632684 eV Core-core repulsion = 17595.203588 eV Total energy + Delta-G solvation = -2848.429096 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.40946 -37.84178 -36.04683 -34.40076 -33.90762 -32.61710 -29.83244 -28.16992 -27.09153 -26.80029 -25.07063 -22.92795 -22.20064 -21.86334 -21.48248 -18.89415 -18.44471 -17.13018 -16.73030 -16.51951 -15.94934 -15.65513 -15.28277 -14.96136 -14.89867 -14.67344 -14.43508 -14.14444 -13.82595 -13.71563 -13.41791 -13.20416 -12.98554 -12.88232 -12.75607 -12.44054 -12.28052 -12.20742 -12.12584 -12.09611 -11.91097 -11.67127 -11.62121 -11.37668 -11.31853 -11.11739 -10.96154 -10.72600 -10.58290 -10.56383 -9.33869 -8.20364 -6.31862 1.39225 1.39852 1.53394 2.40627 3.12301 3.21195 3.74988 3.77135 3.80275 4.09234 4.16819 4.26538 4.30727 4.34132 4.34811 4.41014 4.51429 4.54959 4.63544 4.66359 4.75205 4.83158 4.85038 4.88150 4.92576 4.93156 4.98163 5.06757 5.10482 5.12573 5.20158 5.22426 5.24509 5.27258 5.32457 5.35643 5.46514 5.48761 5.54663 5.55024 5.64556 5.70408 5.77591 5.86604 6.13575 6.25577 6.48369 6.85891 7.37484 8.91837 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.043511 B = 0.002443 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.366208 B =11459.918851 C =11753.013890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.083 4.083 3 H 0.065 0.935 4 C -0.103 4.103 5 C -0.074 4.074 6 H 0.072 0.928 7 C 0.063 3.937 8 N -0.697 5.697 9 C 0.071 3.929 10 C -0.105 4.105 11 C -0.097 4.097 12 C 0.022 3.978 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.108 4.108 22 C -0.082 4.082 23 H 0.059 0.941 24 C -0.149 4.149 25 C -0.101 4.101 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.342 0.658 34 H 0.030 0.970 35 H 0.069 0.931 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.050 0.950 40 H -0.011 1.011 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 24.770 -14.468 28.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 H 0.084 0.916 4 C -0.141 4.141 5 C -0.093 4.093 6 H 0.091 0.909 7 C -0.066 4.066 8 N -0.329 5.329 9 C -0.058 4.058 10 C -0.143 4.143 11 C -0.135 4.135 12 C -0.015 4.015 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.202 4.202 16 N -0.575 5.575 17 Si 0.792 3.208 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.145 4.145 22 C -0.101 4.101 23 H 0.078 0.922 24 C -0.206 4.206 25 C -0.139 4.139 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.046 0.954 32 H 0.086 0.914 33 H 0.161 0.839 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.007 0.993 41 H 0.008 0.992 42 H 0.072 0.928 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -1.268 24.710 -14.267 28.561 hybrid contribution 1.122 -0.970 0.522 1.572 sum -0.146 23.740 -13.746 27.432 Atomic orbital electron populations 1.21951 0.95167 1.01945 1.01642 1.20753 0.95796 0.99395 0.94160 0.91633 1.21403 1.01140 0.94035 0.97559 1.20951 1.00305 0.95074 0.92986 0.90925 1.22138 0.98048 0.87752 0.98708 1.60493 1.64120 1.03776 1.04505 1.21839 0.97118 0.93869 0.93020 1.21466 1.00808 0.94616 0.97448 1.21396 0.99644 0.95643 0.96795 1.19029 0.94739 0.92463 0.95241 1.21771 1.36942 0.94158 1.05289 0.92213 1.26040 0.95502 0.98090 1.00527 1.70117 1.43869 1.06540 1.37009 0.85365 0.78165 0.78380 0.78931 1.18546 1.20286 1.20253 1.21472 0.99091 0.99725 0.94251 1.20744 0.97438 0.95147 0.96755 0.92208 1.21942 0.97170 1.00194 1.01308 1.21170 1.01209 0.94089 0.97428 0.92654 0.92781 0.92365 0.92082 0.91854 0.95354 0.91414 0.83942 0.95150 0.91227 0.92681 0.92940 0.93153 0.93102 0.99260 0.99214 0.92761 0.92449 0.92528 0.92352 0.93329 0.92373 0.91761 0.92446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 8.91 71.92 0.64 -1.26 16 2 C -0.08 -1.05 2.62 -11.55 -0.03 -1.08 16 3 H 0.07 0.75 8.29 -1.29 -0.01 0.74 16 4 C -0.10 -1.48 4.58 30.26 0.14 -1.34 16 5 C -0.07 -1.27 2.24 -10.84 -0.02 -1.29 16 6 H 0.07 1.42 6.53 -2.55 -0.02 1.41 16 7 C 0.06 1.27 5.12 86.42 0.44 1.71 16 8 N -0.70 -17.23 6.50 -513.28 -3.34 -20.56 16 9 C 0.07 2.00 5.69 86.30 0.49 2.49 16 10 C -0.11 -3.70 5.47 30.59 0.17 -3.53 16 11 C -0.10 -4.10 5.15 30.59 0.16 -3.94 16 12 C 0.02 1.23 4.97 29.85 0.15 1.38 16 13 C -0.54 -31.96 9.11 25.60 0.23 -31.73 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.34 16 15 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 16 N -0.93 -58.38 13.29 21.45 0.28 -58.09 16 17 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 18 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 21 C -0.11 -1.76 4.40 30.26 0.13 -1.63 16 22 C -0.08 -1.19 2.62 -11.55 -0.03 -1.22 16 23 H 0.06 0.84 8.29 -1.29 -0.01 0.83 16 24 C -0.15 -2.22 8.91 71.92 0.64 -1.58 16 25 C -0.10 -1.28 4.78 29.70 0.14 -1.14 16 26 H 0.05 0.79 4.78 -2.39 -0.01 0.78 16 27 H 0.05 0.67 8.10 -2.39 -0.02 0.65 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.85 8.17 -2.22 -0.02 0.84 16 30 H 0.06 0.90 8.09 -2.21 -0.02 0.88 16 31 H 0.03 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.34 8.06 6.98 -89.69 -0.63 7.44 16 34 H 0.03 0.83 8.14 -2.38 -0.02 0.81 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 40 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 41 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 42 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.06 0.93 8.17 -2.22 -0.02 0.91 16 44 H 0.06 1.02 6.57 -2.21 -0.01 1.01 16 45 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 46 H 0.05 0.78 8.10 -2.38 -0.02 0.77 16 47 H 0.06 0.91 4.79 -2.38 -0.01 0.89 16 48 H 0.06 0.74 7.98 -1.75 -0.01 0.73 16 49 H 0.06 0.69 8.24 -1.74 -0.01 0.67 16 Total: -1.00 -63.83 367.50 2.96 -60.87 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.27 Total: 14.56 kcal Atomic # 6 Polarization: -47.66 SS G_CDS: 3.71 Total: -43.95 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -3.05 Total: -78.66 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -63.83 2.96 -60.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695353635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.341 kcal (2) G-P(sol) polarization free energy of solvation -63.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds