Wall clock time and date at job start Mon Mar 30 2020 08:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46887 * 2 1 4 4 C 1.53004 * 109.47271 * 120.00628 * 2 1 3 5 5 C 1.53001 * 109.47189 * 59.99547 * 4 2 1 6 6 C 1.52995 * 109.46969 * 179.97438 * 5 4 2 7 7 N 1.46906 * 109.46978 * 175.00329 * 6 5 4 8 8 C 1.46901 * 110.99793 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46769 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.08009 * 120.00339 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00310 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99776 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00473 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47112 * 60.00220 * 16 14 12 18 18 H 1.48500 * 109.47454 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47261 * 300.00048 * 16 14 12 20 20 C 1.53009 * 109.46855 * 60.00228 * 5 4 2 21 21 C 1.53004 * 109.47036 * 299.99866 * 20 5 4 22 22 H 1.08997 * 109.46783 * 299.99857 * 21 20 5 23 23 C 1.52998 * 109.46719 * 180.02562 * 21 20 5 24 24 C 1.53001 * 109.47189 * 60.00339 * 21 20 5 25 25 H 1.08995 * 109.47428 * 299.99568 * 1 2 3 26 26 H 1.08998 * 109.47616 * 59.99638 * 1 2 3 27 27 H 1.09002 * 109.47344 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46735 * 300.00191 * 4 2 1 29 29 H 1.08997 * 109.46783 * 180.02562 * 4 2 1 30 30 H 1.08994 * 109.47469 * 300.00692 * 5 4 2 31 31 H 1.08995 * 109.46859 * 55.00621 * 6 5 4 32 32 H 1.09002 * 109.47639 * 295.00289 * 6 5 4 33 33 H 1.00899 * 110.99995 * 56.04730 * 7 6 5 34 34 H 1.09002 * 109.47401 * 59.99808 * 8 7 6 35 35 H 1.09001 * 109.46874 * 299.99821 * 8 7 6 36 36 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 37 37 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 38 38 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 39 39 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 40 40 H 1.08992 * 109.47098 * 299.99158 * 11 10 9 41 41 H 1.09001 * 109.47583 * 60.00267 * 11 10 9 42 42 H 0.96998 * 120.00187 * 179.97438 * 15 14 12 43 43 H 1.08994 * 109.46704 * 59.99996 * 20 5 4 44 44 H 1.09002 * 109.46753 * 179.97438 * 20 5 4 45 45 H 1.09007 * 109.47068 * 299.99980 * 23 21 20 46 46 H 1.08998 * 109.47173 * 59.99534 * 23 21 20 47 47 H 1.09002 * 109.46754 * 180.02562 * 23 21 20 48 48 H 1.08998 * 109.46799 * 180.02562 * 24 21 20 49 49 H 1.08994 * 109.47469 * 59.99308 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5299 -2.1639 1.2491 6 6 2.0405 -2.8854 2.4979 7 7 1.4548 -4.2312 2.5597 8 6 1.9232 -4.9550 3.7491 9 6 1.2937 -6.3492 3.7784 10 6 1.7810 -7.1029 5.0175 11 6 1.1520 -8.4973 5.0464 12 6 1.6325 -9.2399 6.2666 13 1 2.3177 -8.7646 6.9531 14 6 1.1967 -10.5256 6.5073 15 7 0.3611 -11.1038 5.6722 16 14 1.7917 -11.4458 8.0200 17 1 1.3966 -10.6987 9.2411 18 1 1.1813 -12.7993 8.0481 19 1 3.2706 -11.5713 7.9733 20 6 2.0399 -2.8851 -0.0003 21 6 1.5299 -2.1637 -1.2495 22 1 0.4399 -2.1637 -1.2494 23 6 2.0394 -2.8852 -2.4987 24 6 2.0400 -0.7212 -1.2494 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6766 -0.2076 2.1392 29 1 3.1300 -0.7210 1.2493 30 1 0.4400 -2.1639 1.2490 31 1 1.7525 -2.3227 3.3858 32 1 3.1268 -2.9636 2.4538 33 1 1.6535 -4.7510 1.7181 34 1 1.6341 -4.4065 4.6456 35 1 3.0087 -5.0475 3.7140 36 1 0.2081 -6.2570 3.8133 37 1 1.5831 -6.8975 2.8820 38 1 2.8666 -7.1951 4.9831 39 1 1.4912 -6.5544 5.9138 40 1 0.0665 -8.4055 5.0807 41 1 1.4423 -9.0456 4.1502 42 1 0.0548 -12.0085 5.8413 43 1 3.1299 -2.8850 -0.0002 44 1 1.6769 -3.9129 -0.0001 45 1 3.1294 -2.8856 -2.4989 46 1 1.6757 -3.9128 -2.4985 47 1 1.6764 -2.3710 -3.3887 48 1 1.6762 -0.2072 -2.1391 49 1 3.1299 -0.7212 -1.2493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000695353638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:22 Heat of formation + Delta-G solvation = -63.020015 kcal Electronic energy + Delta-G solvation = -20375.715454 eV Core-core repulsion = 17527.945211 eV Total energy + Delta-G solvation = -2847.770244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.87916 -36.69344 -34.41472 -33.43561 -32.65407 -31.21328 -28.16863 -27.05026 -26.73111 -25.31427 -23.65391 -21.70004 -21.26234 -20.66167 -19.86888 -18.92450 -16.28175 -16.01577 -15.69467 -15.10245 -14.78783 -14.58062 -14.38651 -14.20776 -14.04905 -13.68928 -13.17570 -12.80683 -12.52848 -12.40354 -12.32364 -12.02934 -11.87749 -11.80486 -11.53247 -11.39401 -11.24577 -11.13468 -11.02439 -10.91355 -10.53589 -10.51149 -10.40668 -10.36299 -10.14779 -10.05793 -9.58934 -9.21617 -8.97442 -8.32060 -8.28956 -5.95008 -3.97226 3.35948 3.39996 3.42664 4.18474 4.39930 4.43311 4.48499 4.51544 4.82099 4.92524 5.01780 5.06850 5.14771 5.21639 5.37075 5.40164 5.41995 5.42899 5.45908 5.48688 5.54067 5.61465 5.63786 5.67065 5.70032 5.76829 5.83926 5.85989 5.96002 5.98704 6.03424 6.09017 6.13609 6.19238 6.21457 6.30913 6.38300 6.56137 6.87067 7.00901 7.10821 7.28397 7.48845 7.73959 7.90563 8.06317 8.49092 9.10127 9.66361 11.16360 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.039404 B = 0.002441 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.411900 B =11467.069912 C =11811.818111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 H 0.066 0.934 4 C -0.108 4.108 5 C -0.087 4.087 6 C 0.063 3.937 7 N -0.692 5.692 8 C 0.059 3.941 9 C -0.115 4.115 10 C -0.109 4.109 11 C 0.021 3.979 12 C -0.520 4.520 13 H 0.053 0.947 14 C 0.055 3.945 15 N -0.897 5.897 16 Si 0.892 3.108 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.277 1.277 20 C -0.111 4.111 21 C -0.093 4.093 22 H 0.073 0.927 23 C -0.148 4.148 24 C -0.108 4.108 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.025 0.975 33 H 0.338 0.662 34 H 0.068 0.932 35 H 0.024 0.976 36 H 0.064 0.936 37 H 0.053 0.947 38 H 0.044 0.956 39 H 0.047 0.953 40 H 0.016 0.984 41 H 0.014 0.986 42 H 0.260 0.740 43 H 0.057 0.943 44 H 0.065 0.935 45 H 0.052 0.948 46 H 0.055 0.945 47 H 0.052 0.948 48 H 0.058 0.942 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.143 23.140 -14.992 27.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 H 0.084 0.916 4 C -0.146 4.146 5 C -0.106 4.106 6 C -0.067 4.067 7 N -0.323 5.323 8 C -0.069 4.069 9 C -0.153 4.153 10 C -0.147 4.147 11 C -0.016 4.016 12 C -0.559 4.559 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.720 3.280 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.148 4.148 21 C -0.111 4.111 22 H 0.092 0.908 23 C -0.206 4.206 24 C -0.146 4.146 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.043 0.957 33 H 0.157 0.843 34 H 0.086 0.914 35 H 0.043 0.957 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.084 0.916 45 H 0.071 0.929 46 H 0.074 0.926 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.469 23.184 -14.715 27.570 hybrid contribution 1.260 -0.818 0.596 1.616 sum 3.729 22.366 -14.118 26.711 Atomic orbital electron populations 1.21948 0.95269 1.02383 1.01277 1.21080 0.96034 0.98805 0.94991 0.91561 1.21573 1.00363 0.95209 0.97481 1.21217 1.01552 0.93960 0.93837 1.21988 0.96032 0.90607 0.98059 1.60544 1.62555 1.03333 1.05879 1.22065 0.96658 0.95395 0.92830 1.21635 1.00938 0.93164 0.99604 1.21589 0.99511 0.98495 0.95101 1.19087 0.95959 0.89743 0.96793 1.21262 1.27262 0.98901 1.08442 0.92844 1.25037 0.95200 0.97697 0.96621 1.69961 1.32874 1.14120 1.36654 0.86667 0.78966 0.78899 0.83508 1.20258 1.21304 1.20300 1.21668 1.00327 0.99177 0.93670 1.21154 1.00690 0.94607 0.94655 0.90843 1.21842 1.01049 1.00413 0.97276 1.21620 1.00362 0.95299 0.97295 0.92864 0.93094 0.91739 0.91974 0.92202 0.89885 0.91275 0.95706 0.84337 0.91375 0.95744 0.91675 0.92836 0.93732 0.93464 0.96607 0.96755 0.93003 0.92389 0.91635 0.92903 0.92555 0.92933 0.92288 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.50 37.16 0.32 -0.77 16 2 C -0.09 -0.65 3.20 -90.61 -0.29 -0.94 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -0.85 4.73 -26.73 -0.13 -0.98 16 5 C -0.09 -0.79 2.12 -90.62 -0.19 -0.98 16 6 C 0.06 0.67 5.14 -3.82 -0.02 0.65 16 7 N -0.69 -8.90 6.50 -113.78 -0.74 -9.64 16 8 C 0.06 0.87 5.69 -3.82 -0.02 0.85 16 9 C -0.12 -2.04 5.47 -26.73 -0.15 -2.18 16 10 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 11 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 13 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 14 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.59 13.29 55.43 0.74 -26.86 16 16 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 17 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 C -0.11 -0.96 4.26 -26.72 -0.11 -1.07 16 21 C -0.09 -0.71 2.44 -90.62 -0.22 -0.93 16 22 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 23 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 24 C -0.11 -0.77 4.73 -26.73 -0.13 -0.89 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.50 4.81 -51.93 -0.25 0.25 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.83 6.43 -51.93 -0.33 0.50 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.34 4.13 6.98 -39.29 -0.27 3.86 16 34 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.07 0.61 6.68 -51.93 -0.35 0.26 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 369.17 15.07 5.56 5.56 Total: -1.00 -29.94 369.17 -10.71 -40.65 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -9.96 Total: -2.81 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -1.29 Total: -23.97 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.00 Total: -36.50 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -29.94 -10.71 -40.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695353638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.372 kcal (2) G-P(sol) polarization free energy of solvation -29.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds