Wall clock time and date at job start Mon Mar 30 2020 08:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.46887 * 2 1 4 4 C 1.53004 * 109.47271 * 120.00628 * 2 1 3 5 5 C 1.53001 * 109.47189 * 59.99547 * 4 2 1 6 6 C 1.52995 * 109.46969 * 179.97438 * 5 4 2 7 7 N 1.46906 * 109.46978 * 175.00329 * 6 5 4 8 8 C 1.46901 * 110.99793 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.46769 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.46886 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.46886 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.46912 * 179.97438 * 11 10 9 13 13 H 1.08009 * 120.00339 * 0.02562 * 12 11 10 14 14 C 1.37874 * 120.00310 * 179.97438 * 12 11 10 15 15 N 1.31519 * 119.99776 * 359.97438 * 14 12 11 16 16 Si 1.86798 * 120.00473 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47112 * 60.00220 * 16 14 12 18 18 H 1.48500 * 109.47454 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47261 * 300.00048 * 16 14 12 20 20 C 1.53009 * 109.46855 * 60.00228 * 5 4 2 21 21 C 1.53004 * 109.47036 * 299.99866 * 20 5 4 22 22 H 1.08997 * 109.46783 * 299.99857 * 21 20 5 23 23 C 1.52998 * 109.46719 * 180.02562 * 21 20 5 24 24 C 1.53001 * 109.47189 * 60.00339 * 21 20 5 25 25 H 1.08995 * 109.47428 * 299.99568 * 1 2 3 26 26 H 1.08998 * 109.47616 * 59.99638 * 1 2 3 27 27 H 1.09002 * 109.47344 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46735 * 300.00191 * 4 2 1 29 29 H 1.08997 * 109.46783 * 180.02562 * 4 2 1 30 30 H 1.08994 * 109.47469 * 300.00692 * 5 4 2 31 31 H 1.08995 * 109.46859 * 55.00621 * 6 5 4 32 32 H 1.09002 * 109.47639 * 295.00289 * 6 5 4 33 33 H 1.00899 * 110.99995 * 56.04730 * 7 6 5 34 34 H 1.09002 * 109.47401 * 59.99808 * 8 7 6 35 35 H 1.09001 * 109.46874 * 299.99821 * 8 7 6 36 36 H 1.09001 * 109.47194 * 299.99524 * 9 8 7 37 37 H 1.08992 * 109.47399 * 59.99697 * 9 8 7 38 38 H 1.09001 * 109.47109 * 299.99380 * 10 9 8 39 39 H 1.09002 * 109.47508 * 59.99571 * 10 9 8 40 40 H 1.08992 * 109.47098 * 299.99158 * 11 10 9 41 41 H 1.09001 * 109.47583 * 60.00267 * 11 10 9 42 42 H 0.96998 * 120.00187 * 179.97438 * 15 14 12 43 43 H 1.08994 * 109.46704 * 59.99996 * 20 5 4 44 44 H 1.09002 * 109.46753 * 179.97438 * 20 5 4 45 45 H 1.09007 * 109.47068 * 299.99980 * 23 21 20 46 46 H 1.08998 * 109.47173 * 59.99534 * 23 21 20 47 47 H 1.09002 * 109.46754 * 180.02562 * 23 21 20 48 48 H 1.08998 * 109.46799 * 180.02562 * 24 21 20 49 49 H 1.08994 * 109.47469 * 59.99308 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.5299 -2.1639 1.2491 6 6 2.0405 -2.8854 2.4979 7 7 1.4548 -4.2312 2.5597 8 6 1.9232 -4.9550 3.7491 9 6 1.2937 -6.3492 3.7784 10 6 1.7810 -7.1029 5.0175 11 6 1.1520 -8.4973 5.0464 12 6 1.6325 -9.2399 6.2666 13 1 2.3177 -8.7646 6.9531 14 6 1.1967 -10.5256 6.5073 15 7 0.3611 -11.1038 5.6722 16 14 1.7917 -11.4458 8.0200 17 1 1.3966 -10.6987 9.2411 18 1 1.1813 -12.7993 8.0481 19 1 3.2706 -11.5713 7.9733 20 6 2.0399 -2.8851 -0.0003 21 6 1.5299 -2.1637 -1.2495 22 1 0.4399 -2.1637 -1.2494 23 6 2.0394 -2.8852 -2.4987 24 6 2.0400 -0.7212 -1.2494 25 1 -0.3634 0.5137 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.6766 -0.2076 2.1392 29 1 3.1300 -0.7210 1.2493 30 1 0.4400 -2.1639 1.2490 31 1 1.7525 -2.3227 3.3858 32 1 3.1268 -2.9636 2.4538 33 1 1.6535 -4.7510 1.7181 34 1 1.6341 -4.4065 4.6456 35 1 3.0087 -5.0475 3.7140 36 1 0.2081 -6.2570 3.8133 37 1 1.5831 -6.8975 2.8820 38 1 2.8666 -7.1951 4.9831 39 1 1.4912 -6.5544 5.9138 40 1 0.0665 -8.4055 5.0807 41 1 1.4423 -9.0456 4.1502 42 1 0.0548 -12.0085 5.8413 43 1 3.1299 -2.8850 -0.0002 44 1 1.6769 -3.9129 -0.0001 45 1 3.1294 -2.8856 -2.4989 46 1 1.6757 -3.9128 -2.4985 47 1 1.6764 -2.3710 -3.3887 48 1 1.6762 -0.2072 -2.1391 49 1 3.1299 -0.7212 -1.2493 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000695353638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:22 Heat of formation + Delta-G solvation = -78.236797 kcal Electronic energy + Delta-G solvation = -20376.375304 eV Core-core repulsion = 17527.945211 eV Total energy + Delta-G solvation = -2848.430093 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.54849 -37.86435 -36.04978 -34.40810 -34.01039 -32.52576 -29.79272 -27.64197 -27.35607 -26.75635 -25.04634 -22.96439 -22.15426 -21.88417 -21.19248 -19.54871 -18.43493 -17.14443 -16.56182 -16.38658 -16.06901 -15.63831 -15.58232 -14.99981 -14.81470 -14.63354 -14.46676 -14.09403 -13.70320 -13.58677 -13.38247 -13.12061 -12.99904 -12.82998 -12.67321 -12.51028 -12.41325 -12.27928 -12.20454 -12.08703 -11.89881 -11.77176 -11.61381 -11.37593 -11.32617 -11.13090 -11.01126 -10.77745 -10.66123 -10.55251 -9.34700 -8.19983 -6.31765 1.39160 1.42831 1.50799 2.40811 3.12466 3.20646 3.75875 3.78753 3.81727 4.08943 4.16464 4.23490 4.28901 4.38413 4.41478 4.50454 4.53082 4.55709 4.64789 4.69479 4.77016 4.82768 4.84738 4.87430 4.88079 4.94148 4.94671 5.02685 5.09387 5.12639 5.19869 5.23992 5.26890 5.27449 5.34616 5.35385 5.42096 5.46697 5.52021 5.54395 5.58364 5.70903 5.77476 5.86437 6.12653 6.25469 6.47635 6.85587 7.37488 8.91810 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.039404 B = 0.002441 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.411900 B =11467.069912 C =11811.818111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 H 0.075 0.925 4 C -0.105 4.105 5 C -0.080 4.080 6 C 0.064 3.936 7 N -0.697 5.697 8 C 0.071 3.929 9 C -0.105 4.105 10 C -0.097 4.097 11 C 0.023 3.977 12 C -0.546 4.546 13 H 0.060 0.940 14 C -0.004 4.004 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.266 1.266 18 H -0.282 1.282 19 H -0.266 1.266 20 C -0.108 4.108 21 C -0.091 4.091 22 H 0.068 0.932 23 C -0.147 4.147 24 C -0.105 4.105 25 H 0.052 0.948 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.028 0.972 33 H 0.342 0.658 34 H 0.069 0.931 35 H 0.030 0.970 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.050 0.950 40 H -0.011 1.011 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.059 0.941 48 H 0.065 0.935 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.181 24.324 -14.709 28.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.107 4.107 3 H 0.093 0.907 4 C -0.143 4.143 5 C -0.098 4.098 6 C -0.065 4.065 7 N -0.329 5.329 8 C -0.058 4.058 9 C -0.143 4.143 10 C -0.135 4.135 11 C -0.014 4.014 12 C -0.584 4.584 13 H 0.078 0.922 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.191 1.191 18 H -0.207 1.207 19 H -0.191 1.191 20 C -0.146 4.146 21 C -0.109 4.109 22 H 0.087 0.913 23 C -0.205 4.205 24 C -0.143 4.143 25 H 0.071 0.929 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.046 0.954 33 H 0.161 0.839 34 H 0.088 0.912 35 H 0.049 0.951 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.007 0.993 41 H 0.008 0.992 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.078 0.922 48 H 0.084 0.916 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.513 24.389 -14.440 28.560 hybrid contribution 0.903 -1.188 0.468 1.563 sum 4.416 23.202 -13.972 27.441 Atomic orbital electron populations 1.21931 0.95347 1.01887 1.01598 1.21079 0.95924 0.99160 0.94568 0.90677 1.21548 1.00461 0.94294 0.98019 1.21134 1.00872 0.94658 0.93177 1.22030 0.96142 0.89410 0.98890 1.60503 1.62925 1.04135 1.05383 1.21841 0.96617 0.93569 0.93821 1.21465 1.00386 0.94756 0.97741 1.21398 0.99360 0.95660 0.97064 1.19018 0.94562 0.92671 0.95157 1.21722 1.27627 0.99721 1.09344 0.92186 1.26039 0.95155 0.98769 1.00136 1.70102 1.34022 1.14635 1.38758 0.85473 0.78844 0.77376 0.79193 1.19098 1.20746 1.19080 1.21637 1.00214 0.98741 0.94018 1.21128 1.00382 0.95090 0.94317 0.91325 1.21830 1.01115 1.00147 0.97381 1.21598 1.00390 0.94723 0.97565 0.92891 0.92456 0.92625 0.91857 0.91959 0.90865 0.91403 0.95364 0.83927 0.91214 0.95142 0.92681 0.92938 0.93151 0.93088 0.99286 0.99229 0.92744 0.92417 0.92578 0.92765 0.93097 0.92184 0.91586 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 8.50 71.98 0.61 -1.35 16 2 C -0.09 -1.12 3.20 -10.79 -0.03 -1.15 16 3 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 4 C -0.11 -1.49 4.73 30.60 0.14 -1.35 16 5 C -0.08 -1.36 2.12 -10.79 -0.02 -1.38 16 6 C 0.06 1.30 5.14 86.30 0.44 1.75 16 7 N -0.70 -17.30 6.50 -513.88 -3.34 -20.64 16 8 C 0.07 2.00 5.69 86.30 0.49 2.49 16 9 C -0.11 -3.71 5.47 30.59 0.17 -3.54 16 10 C -0.10 -4.10 5.15 30.59 0.16 -3.95 16 11 C 0.02 1.27 4.97 29.85 0.15 1.41 16 12 C -0.55 -32.13 9.11 25.60 0.23 -31.90 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 15 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16 16 Si 0.97 45.11 29.54 68.60 2.03 47.13 16 17 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 18 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 20 C -0.11 -1.77 4.26 30.60 0.13 -1.64 16 21 C -0.09 -1.30 2.44 -10.79 -0.03 -1.32 16 22 H 0.07 1.06 6.43 -2.39 -0.02 1.04 16 23 C -0.15 -1.99 9.19 71.98 0.66 -1.33 16 24 C -0.11 -1.31 4.73 30.60 0.14 -1.16 16 25 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.05 0.82 4.81 -2.39 -0.01 0.81 16 28 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 1.42 6.43 -2.39 -0.02 1.40 16 31 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.03 0.56 8.14 -2.39 -0.02 0.55 16 33 H 0.34 8.10 6.98 -89.69 -0.63 7.47 16 34 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.05 2.06 8.14 -2.39 -0.02 2.05 16 39 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 40 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 41 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 42 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.06 1.02 6.68 -2.39 -0.02 1.00 16 45 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 46 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 48 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 49 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -63.76 369.17 2.92 -60.84 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 0.24 Total: 14.99 kcal Atomic # 6 Polarization: -47.87 SS G_CDS: 3.71 Total: -44.16 kcal Atomic # 7 Polarization: -75.74 SS G_CDS: -3.06 Total: -78.80 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -63.76 2.92 -60.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000695353638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.397 kcal (2) G-P(sol) polarization free energy of solvation -63.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds