Wall clock time and date at job start Mon Mar 30 2020 08:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52812 * 1 3 3 H 1.11037 * 106.76257 * 2 1 4 4 C 1.52240 * 110.62803 * 116.21313 * 2 1 3 5 5 C 1.52764 * 110.73892 * 73.57266 * 4 2 1 6 6 H 1.08699 * 110.38188 * 299.79269 * 5 4 2 7 7 N 1.47256 * 109.12785 * 180.19566 * 5 4 2 8 8 C 1.46902 * 110.99998 * 184.48746 * 7 5 4 9 9 C 1.46895 * 110.99824 * 60.53159 * 7 5 4 10 10 C 1.53000 * 109.47045 * 190.00014 * 9 7 5 11 11 C 1.52998 * 109.47381 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47179 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47131 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99969 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00247 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00040 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00276 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47158 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47158 * 119.99406 * 17 15 13 20 20 H 1.48505 * 109.47222 * 239.99333 * 17 15 13 21 21 C 1.52751 * 108.92260 * 61.13848 * 5 4 2 22 22 C 1.52236 * 110.76763 * 298.92485 * 21 5 4 23 23 H 1.11048 * 107.09792 * 170.32073 * 22 21 5 24 24 C 1.52828 * 110.61963 * 286.29068 * 22 21 5 25 25 C 1.51630 * 112.96274 * 52.20900 * 22 21 5 26 26 H 1.09003 * 109.47316 * 177.15369 * 1 2 3 27 27 H 1.09002 * 109.47318 * 297.15356 * 1 2 3 28 28 H 1.09000 * 109.47700 * 57.15108 * 1 2 3 29 29 H 1.09320 * 109.54671 * 313.06455 * 4 2 1 30 30 H 1.09316 * 109.56082 * 194.10226 * 4 2 1 31 31 H 1.09000 * 109.46807 * 59.99964 * 8 7 5 32 32 H 1.08997 * 109.46913 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47092 * 300.00104 * 8 7 5 34 34 H 1.08996 * 109.47298 * 309.99677 * 9 7 5 35 35 H 1.08998 * 109.47027 * 70.00432 * 9 7 5 36 36 H 1.09005 * 109.47224 * 300.00666 * 10 9 7 37 37 H 1.09009 * 109.47251 * 59.99700 * 10 9 7 38 38 H 1.09001 * 109.46782 * 300.00126 * 11 10 9 39 39 H 1.08998 * 109.46930 * 60.00272 * 11 10 9 40 40 H 1.09009 * 109.46909 * 299.99859 * 12 11 10 41 41 H 1.08997 * 109.47211 * 59.99574 * 12 11 10 42 42 H 0.97001 * 120.00381 * 180.02562 * 16 15 13 43 43 H 1.09325 * 109.22004 * 59.68900 * 21 5 4 44 44 H 1.09336 * 109.18949 * 178.21218 * 21 5 4 45 45 H 1.08997 * 109.47490 * 59.99663 * 24 22 21 46 46 H 1.09001 * 109.46927 * 180.02562 * 24 22 21 47 47 H 1.08997 * 109.47016 * 299.99703 * 24 22 21 48 48 H 1.10207 * 108.71142 * 78.72677 * 25 22 21 49 49 H 1.10202 * 108.74550 * 193.80638 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5281 0.0000 0.0000 3 1 1.8484 1.0632 0.0000 4 6 2.0645 -0.6293 1.2783 5 6 1.8769 -2.1453 1.2549 6 1 0.8224 -2.3950 1.1701 7 7 2.4022 -2.7158 2.5067 8 6 2.3396 -4.1833 2.4833 9 6 1.6875 -2.1768 3.6714 10 6 2.4136 -2.5925 4.9524 11 6 1.6690 -2.0317 6.1656 12 6 2.3954 -2.4469 7.4466 13 6 1.6616 -1.8951 8.6416 14 1 0.7668 -1.3067 8.5014 15 6 2.1331 -2.1404 9.9138 16 7 3.2229 -2.8564 10.0845 17 14 1.2239 -1.4558 11.3950 18 1 0.0370 -0.6899 10.9368 19 1 0.7849 -2.5748 12.2670 20 1 2.1272 -0.5580 12.1588 21 6 2.6569 -2.7227 0.0753 22 6 2.1408 -2.1587 -1.2411 23 1 2.8531 -2.4735 -2.0328 24 6 0.7875 -2.7735 -1.5964 25 6 2.0865 -0.6434 -1.2547 26 1 -0.3634 -1.0264 -0.0510 27 1 -0.3634 0.4690 0.9144 28 1 -0.3634 0.5574 -0.8633 29 1 1.5350 -0.2148 2.1402 30 1 3.1284 -0.4000 1.3807 31 1 2.9349 -4.5591 1.6511 32 1 2.7340 -4.5787 3.4194 33 1 1.3040 -4.5010 2.3619 34 1 1.6571 -1.0892 3.6077 35 1 0.6705 -2.5686 3.6869 36 1 2.4441 -3.6803 5.0161 37 1 3.4308 -2.2009 4.9370 38 1 1.6381 -0.9440 6.1021 39 1 0.6521 -2.4238 6.1809 40 1 2.4266 -3.5347 7.5103 41 1 3.4122 -2.0546 7.4311 42 1 3.5544 -3.0294 10.9795 43 1 3.7160 -2.4765 0.1890 44 1 2.5517 -3.8110 0.0732 45 1 0.0680 -2.5477 -0.8094 46 1 0.4362 -2.3576 -2.5407 47 1 0.8934 -3.8540 -1.6927 48 1 3.1029 -0.2547 -1.4288 49 1 1.4832 -0.3184 -2.1177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697692607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:39 Heat of formation + Delta-G solvation = -42.814963 kcal Electronic energy + Delta-G solvation = -21172.754221 eV Core-core repulsion = 18325.860134 eV Total energy + Delta-G solvation = -2846.894087 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.89268 -36.92935 -34.30159 -33.32761 -32.26363 -30.27652 -28.58043 -27.54089 -26.71510 -25.42145 -24.11495 -21.93775 -21.17192 -20.34656 -19.94846 -18.17716 -16.58187 -16.12679 -15.26254 -14.88726 -14.74606 -14.42235 -14.32061 -14.20521 -13.94867 -13.54092 -13.39040 -12.88759 -12.63557 -12.46051 -12.25120 -12.01201 -11.78104 -11.73338 -11.47399 -11.28910 -11.16455 -11.09162 -10.95104 -10.79467 -10.59790 -10.45995 -10.38689 -10.26317 -10.15400 -9.82802 -9.54653 -9.20538 -8.94726 -8.29942 -8.14977 -5.94791 -3.96768 3.33682 3.40871 3.45295 3.93159 4.44467 4.45983 4.50217 4.66682 4.96297 4.98114 4.99537 5.10155 5.14947 5.26994 5.35461 5.40675 5.42642 5.47836 5.51596 5.56612 5.63261 5.65789 5.70529 5.74497 5.81544 5.84846 5.90515 5.93318 5.97239 6.02858 6.06560 6.15493 6.20429 6.22792 6.28273 6.35537 6.39622 6.60448 6.88489 7.04179 7.16645 7.25589 7.34477 7.75240 7.91564 8.06891 8.49899 9.11088 9.66952 11.16619 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035052 B = 0.003058 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.632085 B = 9154.501531 C = 9589.020509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.084 4.084 3 H 0.061 0.939 4 C -0.108 4.108 5 C 0.089 3.911 6 H 0.040 0.960 7 N -0.541 5.541 8 C 0.020 3.980 9 C 0.052 3.948 10 C -0.113 4.113 11 C -0.109 4.109 12 C 0.021 3.979 13 C -0.518 4.518 14 H 0.054 0.946 15 C 0.055 3.945 16 N -0.896 5.896 17 Si 0.890 3.110 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.107 4.107 22 C -0.083 4.083 23 H 0.060 0.940 24 C -0.149 4.149 25 C -0.102 4.102 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.074 0.926 33 H 0.020 0.980 34 H 0.075 0.925 35 H 0.027 0.973 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.043 0.957 40 H 0.014 0.986 41 H 0.015 0.985 42 H 0.259 0.741 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 1.823 -25.221 25.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.103 4.103 3 H 0.080 0.920 4 C -0.146 4.146 5 C -0.019 4.019 6 H 0.058 0.942 7 N -0.265 5.265 8 C -0.129 4.129 9 C -0.075 4.075 10 C -0.151 4.151 11 C -0.147 4.147 12 C -0.016 4.016 13 C -0.557 4.557 14 H 0.073 0.927 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.145 4.145 22 C -0.102 4.102 23 H 0.079 0.921 24 C -0.206 4.206 25 C -0.140 4.140 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.092 0.908 33 H 0.038 0.962 34 H 0.093 0.907 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.032 0.968 41 H 0.034 0.966 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.075 0.925 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.675 1.899 -25.057 25.270 hybrid contribution -1.276 0.057 0.871 1.546 sum -3.951 1.956 -24.186 24.584 Atomic orbital electron populations 1.21950 0.95420 1.01955 1.01433 1.20785 0.95574 0.99437 0.94492 0.92013 1.21532 1.02093 0.94218 0.96772 1.21464 0.96365 0.94710 0.89409 0.94196 1.62177 1.56085 1.06134 1.02058 1.22463 0.99396 0.88123 1.02874 1.22303 0.94964 1.00033 0.90180 1.21667 0.99946 1.00575 0.92899 1.21596 0.98684 0.99300 0.95139 1.19088 0.95552 0.96536 0.90396 1.21337 1.10558 1.32519 0.91263 0.92749 1.25036 0.95099 0.95374 0.99073 1.69981 1.22239 1.39434 1.21933 0.86566 0.79858 0.78804 0.82952 1.19771 1.21058 1.21033 1.21514 1.00319 0.99807 0.92820 1.20781 0.97283 0.94871 0.97293 0.92150 1.21947 0.97319 1.00230 1.01148 1.21196 1.01054 0.94512 0.97229 0.92384 0.92691 0.92998 0.91522 0.91138 0.91572 0.90755 0.96156 0.90698 0.95462 0.92655 0.91776 0.93549 0.93794 0.96785 0.96623 0.93135 0.91205 0.91904 0.92322 0.92909 0.92944 0.92539 0.92389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.91 37.06 0.33 -0.95 16 2 C -0.08 -0.74 2.62 -91.79 -0.24 -0.98 16 3 H 0.06 0.53 8.29 -50.76 -0.42 0.11 16 4 C -0.11 -1.16 4.44 -27.24 -0.12 -1.28 16 5 C 0.09 0.99 1.77 -67.77 -0.12 0.87 16 6 H 0.04 0.47 6.38 -52.10 -0.33 0.14 16 7 N -0.54 -7.21 4.62 -235.04 -1.08 -8.29 16 8 C 0.02 0.24 8.92 60.07 0.54 0.78 16 9 C 0.05 0.78 4.78 -3.83 -0.02 0.77 16 10 C -0.11 -2.02 5.14 -26.73 -0.14 -2.15 16 11 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 12 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 13 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 14 H 0.05 1.54 7.74 -52.48 -0.41 1.14 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.57 13.29 55.43 0.74 -26.84 16 17 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 18 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 21 C -0.11 -1.04 4.29 -27.25 -0.12 -1.15 16 22 C -0.08 -0.68 2.62 -91.79 -0.24 -0.92 16 23 H 0.06 0.46 8.29 -50.75 -0.42 0.04 16 24 C -0.15 -1.15 8.89 37.07 0.33 -0.82 16 25 C -0.10 -0.82 4.78 -28.11 -0.13 -0.95 16 26 H 0.06 0.51 4.94 -51.93 -0.26 0.25 16 27 H 0.05 0.48 8.10 -51.93 -0.42 0.06 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.07 0.77 6.06 -51.75 -0.31 0.46 16 30 H 0.07 0.81 8.17 -51.75 -0.42 0.39 16 31 H 0.07 0.71 6.20 -51.93 -0.32 0.39 16 32 H 0.07 0.99 6.30 -51.93 -0.33 0.66 16 33 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 1.09 5.80 -51.93 -0.30 0.79 16 35 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 36 H 0.05 0.99 6.47 -51.93 -0.34 0.65 16 37 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 38 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 40 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 41 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.07 0.73 8.17 -51.75 -0.42 0.31 16 44 H 0.06 0.60 6.23 -51.74 -0.32 0.28 16 45 H 0.06 0.49 4.87 -51.93 -0.25 0.24 16 46 H 0.05 0.36 8.06 -51.93 -0.42 -0.06 16 47 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 48 H 0.06 0.44 8.24 -51.24 -0.42 0.02 16 49 H 0.06 0.42 7.92 -51.24 -0.41 0.02 16 LS Contribution 358.38 15.07 5.40 5.40 Total: -1.00 -30.14 358.38 -10.05 -40.19 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -9.46 Total: -4.78 kcal Atomic # 6 Polarization: -22.11 SS G_CDS: -0.62 Total: -22.73 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.35 Total: -35.13 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -30.14 -10.05 -40.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697692607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.627 kcal (2) G-P(sol) polarization free energy of solvation -30.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds