Wall clock time and date at job start Mon Mar 30 2020 08:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52812 * 1 3 3 H 1.11037 * 106.76257 * 2 1 4 4 C 1.52240 * 110.62803 * 116.21313 * 2 1 3 5 5 C 1.52764 * 110.73892 * 73.57266 * 4 2 1 6 6 H 1.08699 * 110.38188 * 299.79269 * 5 4 2 7 7 N 1.47256 * 109.12785 * 180.19566 * 5 4 2 8 8 C 1.46902 * 110.99998 * 184.48746 * 7 5 4 9 9 C 1.46895 * 110.99824 * 60.53159 * 7 5 4 10 10 C 1.53000 * 109.47045 * 190.00014 * 9 7 5 11 11 C 1.52998 * 109.47381 * 180.02562 * 10 9 7 12 12 C 1.53002 * 109.47179 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47131 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99969 * 359.97438 * 13 12 11 15 15 C 1.37873 * 120.00247 * 180.02562 * 13 12 11 16 16 N 1.31515 * 120.00040 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 120.00276 * 179.97438 * 15 13 12 18 18 H 1.48505 * 109.47158 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47158 * 119.99406 * 17 15 13 20 20 H 1.48505 * 109.47222 * 239.99333 * 17 15 13 21 21 C 1.52751 * 108.92260 * 61.13848 * 5 4 2 22 22 C 1.52236 * 110.76763 * 298.92485 * 21 5 4 23 23 H 1.11048 * 107.09792 * 170.32073 * 22 21 5 24 24 C 1.52828 * 110.61963 * 286.29068 * 22 21 5 25 25 C 1.51630 * 112.96274 * 52.20900 * 22 21 5 26 26 H 1.09003 * 109.47316 * 177.15369 * 1 2 3 27 27 H 1.09002 * 109.47318 * 297.15356 * 1 2 3 28 28 H 1.09000 * 109.47700 * 57.15108 * 1 2 3 29 29 H 1.09320 * 109.54671 * 313.06455 * 4 2 1 30 30 H 1.09316 * 109.56082 * 194.10226 * 4 2 1 31 31 H 1.09000 * 109.46807 * 59.99964 * 8 7 5 32 32 H 1.08997 * 109.46913 * 179.97438 * 8 7 5 33 33 H 1.09005 * 109.47092 * 300.00104 * 8 7 5 34 34 H 1.08996 * 109.47298 * 309.99677 * 9 7 5 35 35 H 1.08998 * 109.47027 * 70.00432 * 9 7 5 36 36 H 1.09005 * 109.47224 * 300.00666 * 10 9 7 37 37 H 1.09009 * 109.47251 * 59.99700 * 10 9 7 38 38 H 1.09001 * 109.46782 * 300.00126 * 11 10 9 39 39 H 1.08998 * 109.46930 * 60.00272 * 11 10 9 40 40 H 1.09009 * 109.46909 * 299.99859 * 12 11 10 41 41 H 1.08997 * 109.47211 * 59.99574 * 12 11 10 42 42 H 0.97001 * 120.00381 * 180.02562 * 16 15 13 43 43 H 1.09325 * 109.22004 * 59.68900 * 21 5 4 44 44 H 1.09336 * 109.18949 * 178.21218 * 21 5 4 45 45 H 1.08997 * 109.47490 * 59.99663 * 24 22 21 46 46 H 1.09001 * 109.46927 * 180.02562 * 24 22 21 47 47 H 1.08997 * 109.47016 * 299.99703 * 24 22 21 48 48 H 1.10207 * 108.71142 * 78.72677 * 25 22 21 49 49 H 1.10202 * 108.74550 * 193.80638 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5281 0.0000 0.0000 3 1 1.8484 1.0632 0.0000 4 6 2.0645 -0.6293 1.2783 5 6 1.8769 -2.1453 1.2549 6 1 0.8224 -2.3950 1.1701 7 7 2.4022 -2.7158 2.5067 8 6 2.3396 -4.1833 2.4833 9 6 1.6875 -2.1768 3.6714 10 6 2.4136 -2.5925 4.9524 11 6 1.6690 -2.0317 6.1656 12 6 2.3954 -2.4469 7.4466 13 6 1.6616 -1.8951 8.6416 14 1 0.7668 -1.3067 8.5014 15 6 2.1331 -2.1404 9.9138 16 7 3.2229 -2.8564 10.0845 17 14 1.2239 -1.4558 11.3950 18 1 0.0370 -0.6899 10.9368 19 1 0.7849 -2.5748 12.2670 20 1 2.1272 -0.5580 12.1588 21 6 2.6569 -2.7227 0.0753 22 6 2.1408 -2.1587 -1.2411 23 1 2.8531 -2.4735 -2.0328 24 6 0.7875 -2.7735 -1.5964 25 6 2.0865 -0.6434 -1.2547 26 1 -0.3634 -1.0264 -0.0510 27 1 -0.3634 0.4690 0.9144 28 1 -0.3634 0.5574 -0.8633 29 1 1.5350 -0.2148 2.1402 30 1 3.1284 -0.4000 1.3807 31 1 2.9349 -4.5591 1.6511 32 1 2.7340 -4.5787 3.4194 33 1 1.3040 -4.5010 2.3619 34 1 1.6571 -1.0892 3.6077 35 1 0.6705 -2.5686 3.6869 36 1 2.4441 -3.6803 5.0161 37 1 3.4308 -2.2009 4.9370 38 1 1.6381 -0.9440 6.1021 39 1 0.6521 -2.4238 6.1809 40 1 2.4266 -3.5347 7.5103 41 1 3.4122 -2.0546 7.4311 42 1 3.5544 -3.0294 10.9795 43 1 3.7160 -2.4765 0.1890 44 1 2.5517 -3.8110 0.0732 45 1 0.0680 -2.5477 -0.8094 46 1 0.4362 -2.3576 -2.5407 47 1 0.8934 -3.8540 -1.6927 48 1 3.1029 -0.2547 -1.4288 49 1 1.4832 -0.3184 -2.1177 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697692607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:02:39 Heat of formation + Delta-G solvation = -58.391335 kcal Electronic energy + Delta-G solvation = -21173.429663 eV Core-core repulsion = 18325.860134 eV Total energy + Delta-G solvation = -2847.569529 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.73330 -38.00885 -36.08582 -34.25862 -33.96103 -31.44685 -30.02835 -28.17946 -27.91707 -26.48168 -25.66032 -23.31858 -21.95185 -21.72486 -21.41202 -18.94078 -18.44066 -17.41002 -16.55095 -16.46667 -15.83688 -15.71119 -15.27404 -14.95799 -14.89611 -14.63673 -14.38905 -14.21163 -13.79140 -13.67439 -13.50931 -13.31764 -13.08366 -12.87906 -12.76937 -12.51405 -12.36744 -12.27641 -12.18279 -11.96228 -11.87224 -11.79979 -11.54252 -11.35619 -11.28941 -11.23310 -10.99908 -10.86093 -10.57484 -10.56353 -9.21249 -8.20221 -6.31820 1.39090 1.39718 1.53300 2.40570 2.92246 3.12382 3.70218 3.73990 3.94442 4.06160 4.17379 4.23131 4.28745 4.30607 4.32555 4.41666 4.51607 4.53108 4.57283 4.61024 4.67152 4.77954 4.81559 4.86503 4.90145 4.93558 4.94865 5.07910 5.10209 5.13421 5.15567 5.16886 5.20673 5.23455 5.28352 5.35756 5.38167 5.42375 5.50289 5.55240 5.59047 5.62592 5.77196 5.86411 6.16564 6.23967 6.27756 6.85770 7.37536 8.91962 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.035052 B = 0.003058 C = 0.002919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.632085 B = 9154.501531 C = 9589.020509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 H 0.065 0.935 4 C -0.107 4.107 5 C 0.091 3.909 6 H 0.038 0.962 7 N -0.551 5.551 8 C 0.020 3.980 9 C 0.064 3.936 10 C -0.102 4.102 11 C -0.096 4.096 12 C 0.024 3.976 13 C -0.544 4.544 14 H 0.060 0.940 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.967 3.033 18 H -0.261 1.261 19 H -0.277 1.277 20 H -0.277 1.277 21 C -0.103 4.103 22 C -0.082 4.082 23 H 0.070 0.930 24 C -0.147 4.147 25 C -0.102 4.102 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.024 0.976 34 H 0.079 0.921 35 H 0.028 0.972 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.048 0.952 40 H -0.012 1.012 41 H -0.011 1.011 42 H 0.264 0.736 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.063 0.937 47 H 0.054 0.946 48 H 0.058 0.942 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.468 2.502 -26.470 26.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.145 4.145 5 C -0.016 4.016 6 H 0.056 0.944 7 N -0.275 5.275 8 C -0.128 4.128 9 C -0.064 4.064 10 C -0.140 4.140 11 C -0.134 4.134 12 C -0.013 4.013 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.201 4.201 16 N -0.575 5.575 17 Si 0.791 3.209 18 H -0.185 1.185 19 H -0.203 1.203 20 H -0.203 1.203 21 C -0.140 4.140 22 C -0.101 4.101 23 H 0.089 0.911 24 C -0.204 4.204 25 C -0.140 4.140 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.043 0.957 34 H 0.097 0.903 35 H 0.047 0.953 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.067 0.933 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.083 0.917 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.077 0.923 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.852 2.580 -26.327 26.733 hybrid contribution -0.863 -0.181 1.248 1.528 sum -4.716 2.399 -25.080 25.632 Atomic orbital electron populations 1.21935 0.95015 1.01954 1.01679 1.20769 0.95858 0.99517 0.93909 0.91663 1.21518 1.01354 0.94030 0.97558 1.21506 0.96360 0.94939 0.88813 0.94393 1.62152 1.56152 1.06780 1.02409 1.22474 0.99899 0.87545 1.02882 1.22075 0.94535 1.00318 0.89482 1.21488 0.99235 1.00086 0.93173 1.21400 0.98486 0.99618 0.93935 1.19006 0.94695 0.94649 0.92922 1.21768 1.11039 1.32914 0.92460 0.92220 1.26030 0.95935 0.95507 1.02604 1.70114 1.23836 1.40535 1.23023 0.85374 0.78742 0.78264 0.78513 1.18520 1.20264 1.20265 1.21488 0.99598 0.99957 0.92995 1.20771 0.97833 0.94971 0.96482 0.91136 1.21930 0.96707 1.00421 1.01389 1.21192 1.01402 0.94316 0.97057 0.92610 0.93379 0.91737 0.92635 0.92171 0.89876 0.92110 0.95736 0.90294 0.95338 0.92993 0.92809 0.93091 0.93330 0.99326 0.99283 0.92762 0.92012 0.91653 0.93088 0.91845 0.92737 0.92335 0.91112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.91 71.92 0.64 -1.63 16 2 C -0.08 -1.32 2.62 -11.55 -0.03 -1.35 16 3 H 0.06 1.02 8.29 -1.29 -0.01 1.01 16 4 C -0.11 -2.21 4.44 30.26 0.13 -2.07 16 5 C 0.09 1.95 1.77 44.69 0.08 2.02 16 6 H 0.04 0.84 6.38 -2.55 -0.02 0.83 16 7 N -0.55 -14.35 4.62 -897.53 -4.14 -18.49 16 8 C 0.02 0.48 8.92 127.69 1.14 1.62 16 9 C 0.06 1.87 4.78 86.30 0.41 2.28 16 10 C -0.10 -3.68 5.14 30.59 0.16 -3.52 16 11 C -0.10 -4.14 5.15 30.59 0.16 -3.98 16 12 C 0.02 1.35 4.97 29.85 0.15 1.50 16 13 C -0.54 -32.09 9.11 25.60 0.23 -31.86 16 14 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 15 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 16 N -0.93 -58.48 13.29 21.45 0.28 -58.20 16 17 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 18 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 C -0.10 -1.83 4.29 30.26 0.13 -1.70 16 22 C -0.08 -1.16 2.62 -11.55 -0.03 -1.19 16 23 H 0.07 0.89 8.29 -1.28 -0.01 0.88 16 24 C -0.15 -1.93 8.89 71.93 0.64 -1.29 16 25 C -0.10 -1.41 4.78 29.70 0.14 -1.27 16 26 H 0.06 0.88 4.94 -2.39 -0.01 0.87 16 27 H 0.05 0.79 8.10 -2.39 -0.02 0.77 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 1.26 6.06 -2.22 -0.01 1.24 16 30 H 0.06 1.36 8.17 -2.22 -0.02 1.34 16 31 H 0.08 1.69 6.20 -2.39 -0.01 1.67 16 32 H 0.06 1.61 6.30 -2.39 -0.02 1.60 16 33 H 0.02 0.56 8.14 -2.38 -0.02 0.54 16 34 H 0.08 2.27 5.80 -2.39 -0.01 2.25 16 35 H 0.03 0.83 8.12 -2.39 -0.02 0.82 16 36 H 0.05 1.90 6.47 -2.38 -0.02 1.88 16 37 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 38 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 40 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 41 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 42 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 43 H 0.06 1.21 8.17 -2.21 -0.02 1.19 16 44 H 0.06 1.13 6.23 -2.21 -0.01 1.12 16 45 H 0.05 0.75 4.87 -2.39 -0.01 0.74 16 46 H 0.06 0.70 8.06 -2.39 -0.02 0.68 16 47 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.06 0.79 8.24 -1.74 -0.01 0.78 16 49 H 0.07 0.83 7.92 -1.74 -0.01 0.81 16 Total: -1.00 -64.58 358.38 3.49 -61.09 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.90 Total: 10.51 kcal Atomic # 6 Polarization: -46.59 SS G_CDS: 4.41 Total: -42.18 kcal Atomic # 7 Polarization: -72.84 SS G_CDS: -3.86 Total: -76.69 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.58 3.49 -61.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697692607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.703 kcal (2) G-P(sol) polarization free energy of solvation -64.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds