Wall clock time and date at job start Mon Mar 30 2020 08:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47046 * 2 1 4 4 C 1.53002 * 109.46762 * 240.00691 * 2 1 3 5 5 C 1.53002 * 109.46954 * 179.97438 * 4 2 1 6 6 N 1.46902 * 109.47337 * 179.97438 * 5 4 2 7 7 C 1.46906 * 110.99573 * 56.04894 * 6 5 4 8 8 C 1.46898 * 111.00283 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.47048 * 170.00220 * 8 6 5 10 10 C 1.52996 * 109.46990 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.47414 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47545 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99787 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99906 * 179.97438 * 12 11 10 15 15 N 1.31507 * 119.99889 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99589 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47010 * 89.99844 * 16 14 12 18 18 H 1.48501 * 109.47168 * 209.99574 * 16 14 12 19 19 H 1.48495 * 109.47485 * 329.99816 * 16 14 12 20 20 C 1.53002 * 109.46690 * 60.00190 * 5 4 2 21 21 C 1.53002 * 109.47266 * 299.99618 * 20 5 4 22 22 H 1.09001 * 109.46913 * 180.02562 * 21 20 5 23 23 C 1.53001 * 109.47087 * 300.00357 * 21 20 5 24 24 C 1.52991 * 109.47387 * 120.00835 * 2 1 3 25 25 H 1.08993 * 109.46876 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46757 * 299.99327 * 1 2 3 27 27 H 1.09001 * 109.47099 * 59.99708 * 1 2 3 28 28 H 1.09001 * 109.47640 * 59.99932 * 4 2 1 29 29 H 1.08998 * 109.47021 * 299.99946 * 4 2 1 30 30 H 1.08998 * 109.47461 * 299.99981 * 5 4 2 31 31 H 1.09001 * 109.46544 * 183.95424 * 7 6 5 32 32 H 1.09001 * 109.47272 * 303.95030 * 7 6 5 33 33 H 1.09000 * 109.47033 * 63.95479 * 7 6 5 34 34 H 1.08992 * 109.47062 * 290.00772 * 8 6 5 35 35 H 1.09003 * 109.46753 * 50.00460 * 8 6 5 36 36 H 1.09001 * 109.47085 * 300.00035 * 9 8 6 37 37 H 1.08993 * 109.47201 * 60.00475 * 9 8 6 38 38 H 1.09004 * 109.47112 * 300.00527 * 10 9 8 39 39 H 1.09003 * 109.47557 * 59.99525 * 10 9 8 40 40 H 1.09008 * 109.46964 * 299.99728 * 11 10 9 41 41 H 1.08993 * 109.47442 * 59.99119 * 11 10 9 42 42 H 0.97005 * 119.99375 * 179.97438 * 15 14 12 43 43 H 1.08993 * 109.47392 * 60.00213 * 20 5 4 44 44 H 1.09005 * 109.46778 * 180.02562 * 20 5 4 45 45 H 1.08999 * 109.47105 * 179.97438 * 23 21 20 46 46 H 1.08996 * 109.47310 * 299.99615 * 23 21 20 47 47 H 1.09002 * 109.47389 * 59.99762 * 23 21 20 48 48 H 1.09004 * 109.46969 * 300.00131 * 24 2 1 49 49 H 1.09000 * 109.47709 * 59.99571 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 7 4.0597 -1.4135 -2.4490 7 6 3.5125 -0.8048 -3.6689 8 6 5.5281 -1.4331 -2.4830 9 6 6.0000 -2.3672 -3.5991 10 6 7.5294 -2.3882 -3.6340 11 6 8.0013 -3.3217 -4.7505 12 6 9.5078 -3.3429 -4.7846 13 1 10.0722 -2.7494 -4.0806 14 6 10.1655 -4.1199 -5.7145 15 7 9.4782 -4.8429 -6.5714 16 14 12.0328 -4.1454 -5.7572 17 1 12.5335 -5.2246 -4.8683 18 1 12.4929 -4.3955 -7.1468 19 1 12.5567 -2.8367 -5.2903 20 6 4.0804 -1.4417 -0.0006 21 6 3.5705 -0.7206 1.2488 22 1 3.9346 -1.2341 2.1387 23 6 4.0801 0.7221 1.2486 24 6 2.0401 -0.7214 1.2490 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 1.6766 -0.2072 -2.1393 29 1 1.6766 -1.7488 -1.2495 30 1 3.9330 0.3072 -1.2499 31 1 3.8344 -1.3794 -4.5374 32 1 2.4237 -0.8034 -3.6174 33 1 3.8734 0.2199 -3.7570 34 1 5.9007 -0.4261 -2.6701 35 1 5.9089 -1.7894 -1.5257 36 1 5.6274 -3.3743 -3.4118 37 1 5.6192 -2.0110 -4.5562 38 1 7.9024 -1.3811 -3.8210 39 1 7.9100 -2.7445 -2.6768 40 1 7.6284 -4.3289 -4.5639 41 1 7.6208 -2.9650 -5.7076 42 1 9.9410 -5.3892 -7.2259 43 1 3.7175 -2.4694 -0.0005 44 1 5.1705 -1.4409 -0.0006 45 1 3.7165 1.2360 2.1385 46 1 5.1701 0.7225 1.2484 47 1 3.7164 1.2358 0.3587 48 1 1.6767 -0.2077 2.1391 49 1 1.6768 -1.7490 1.2490 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697692608.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:38 Heat of formation + Delta-G solvation = -42.886343 kcal Electronic energy + Delta-G solvation = -21077.520421 eV Core-core repulsion = 18230.623239 eV Total energy + Delta-G solvation = -2846.897182 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.02083 -36.98122 -34.29741 -33.40996 -32.27468 -30.17911 -28.59155 -26.98080 -26.88671 -25.53573 -24.05140 -21.61684 -21.49051 -20.09170 -19.94153 -18.84908 -16.33477 -16.10498 -15.32990 -15.02075 -14.81454 -14.58817 -14.35908 -14.13342 -13.90008 -13.45760 -13.25400 -12.79968 -12.55278 -12.42422 -12.09627 -12.07776 -12.00253 -11.68786 -11.35781 -11.32199 -11.28931 -11.12223 -10.96244 -10.92267 -10.58745 -10.50345 -10.39966 -10.30162 -10.14748 -9.91006 -9.54876 -9.20690 -8.95848 -8.29662 -8.15070 -5.94724 -3.96723 3.34684 3.40568 3.44153 3.92466 4.45235 4.48668 4.50271 4.71973 4.89320 4.98238 5.08738 5.16041 5.20005 5.26002 5.37933 5.40723 5.43340 5.48584 5.49819 5.52612 5.60809 5.64805 5.69908 5.74568 5.76247 5.83973 5.88783 5.94493 6.00241 6.00870 6.10243 6.13317 6.18393 6.20394 6.22587 6.37381 6.38722 6.60240 6.88354 7.04083 7.16439 7.25311 7.34305 7.74987 7.91565 8.06931 8.49853 9.10891 9.66895 11.16687 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036959 B = 0.002984 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.417055 B = 9380.937224 C = 9848.767718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.070 0.930 4 C -0.108 4.108 5 C 0.085 3.915 6 N -0.539 5.539 7 C 0.019 3.981 8 C 0.053 3.947 9 C -0.113 4.113 10 C -0.109 4.109 11 C 0.022 3.978 12 C -0.519 4.519 13 H 0.054 0.946 14 C 0.055 3.945 15 N -0.896 5.896 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.110 4.110 21 C -0.091 4.091 22 H 0.070 0.930 23 C -0.152 4.152 24 C -0.108 4.108 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.043 0.957 39 H 0.046 0.954 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.260 0.740 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.051 0.949 46 H 0.053 0.947 47 H 0.059 0.941 48 H 0.059 0.941 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.839 10.974 14.914 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.112 4.112 3 H 0.088 0.912 4 C -0.146 4.146 5 C -0.023 4.023 6 N -0.263 5.263 7 C -0.129 4.129 8 C -0.074 4.074 9 C -0.151 4.151 10 C -0.147 4.147 11 C -0.015 4.015 12 C -0.558 4.558 13 H 0.072 0.928 14 C -0.146 4.146 15 N -0.536 5.536 16 Si 0.719 3.281 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.148 4.148 21 C -0.110 4.110 22 H 0.088 0.912 23 C -0.209 4.209 24 C -0.146 4.146 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.089 0.911 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.039 0.961 34 H 0.046 0.954 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.034 0.966 41 H 0.032 0.968 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.072 0.928 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.981 10.370 14.777 25.480 hybrid contribution 1.380 0.763 -0.216 1.591 sum -16.601 11.133 14.562 24.730 Atomic orbital electron populations 1.21818 0.95336 1.01804 1.01395 1.21162 0.95228 0.99753 0.95025 0.91195 1.21711 0.94445 1.01341 0.97086 1.21634 0.94841 0.95533 0.90339 1.62051 1.08918 1.53693 1.01623 1.22473 1.00018 0.97050 0.93343 1.22310 0.85938 0.98526 1.00668 1.21657 0.97373 0.99198 0.96849 1.21595 0.92187 1.00294 1.00634 1.19083 0.95529 0.94167 0.92761 1.21300 0.92134 1.26214 1.16106 0.92807 1.25033 0.98238 0.95615 0.95673 1.69972 1.35233 1.28849 1.19539 0.86617 0.86017 0.78339 0.77161 1.20680 1.21252 1.19936 1.21675 1.00634 0.99757 0.92708 1.21109 0.95382 0.96338 0.98143 0.91163 1.21952 1.00951 0.96328 1.01647 1.21630 0.95011 1.00654 0.97267 0.92660 0.92884 0.92841 0.91963 0.91099 0.94312 0.90781 0.91512 0.96121 0.95445 0.90696 0.91779 0.92663 0.93805 0.93546 0.96636 0.96779 0.93076 0.91035 0.91570 0.93005 0.92778 0.92237 0.92271 0.91859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.19 37.16 0.34 -0.69 16 2 C -0.09 -0.75 2.45 -90.62 -0.22 -0.97 16 3 H 0.07 0.58 6.43 -51.93 -0.33 0.25 16 4 C -0.11 -1.04 4.13 -26.73 -0.11 -1.15 16 5 C 0.08 0.94 1.67 -67.71 -0.11 0.83 16 6 N -0.54 -7.20 4.63 -234.88 -1.09 -8.29 16 7 C 0.02 0.24 8.95 60.07 0.54 0.78 16 8 C 0.05 0.79 4.77 -3.82 -0.02 0.77 16 9 C -0.11 -2.02 5.14 -26.73 -0.14 -2.15 16 10 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 11 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 12 C -0.52 -15.15 9.11 -34.44 -0.31 -15.46 16 13 H 0.05 1.52 7.74 -52.48 -0.41 1.12 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 15 N -0.90 -27.61 13.29 55.43 0.74 -26.87 16 16 Si 0.89 22.10 29.54 -169.99 -5.02 17.07 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.11 -1.17 4.52 -26.73 -0.12 -1.30 16 21 C -0.09 -0.79 3.20 -90.60 -0.29 -1.08 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 C -0.15 -1.28 8.50 37.16 0.32 -0.96 16 24 C -0.11 -0.86 4.73 -26.71 -0.13 -0.99 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.59 6.26 -51.93 -0.33 0.27 16 29 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.45 6.43 -51.93 -0.33 0.12 16 31 H 0.07 0.98 6.47 -51.93 -0.34 0.65 16 32 H 0.07 0.72 6.01 -51.93 -0.31 0.41 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 35 H 0.07 1.10 5.83 -51.93 -0.30 0.79 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.05 0.99 6.55 -51.93 -0.34 0.65 16 38 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.76 6.20 -51.93 -0.32 0.44 16 45 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 46 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16 48 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -30.13 360.16 -10.16 -40.28 By element: Atomic # 1 Polarization: 4.83 SS G_CDS: -9.58 Total: -4.75 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -0.63 Total: -22.88 kcal Atomic # 7 Polarization: -34.81 SS G_CDS: -0.35 Total: -35.16 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.13 -10.16 -40.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697692608.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.603 kcal (2) G-P(sol) polarization free energy of solvation -30.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds