Wall clock time and date at job start Mon Mar 30 2020 08:01:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47046 * 2 1 4 4 C 1.53002 * 109.46762 * 240.00691 * 2 1 3 5 5 C 1.53002 * 109.46954 * 179.97438 * 4 2 1 6 6 N 1.46902 * 109.47337 * 179.97438 * 5 4 2 7 7 C 1.46906 * 110.99573 * 56.04894 * 6 5 4 8 8 C 1.46898 * 111.00283 * 180.02562 * 6 5 4 9 9 C 1.53000 * 109.47048 * 170.00220 * 8 6 5 10 10 C 1.52996 * 109.46990 * 180.02562 * 9 8 6 11 11 C 1.52996 * 109.47414 * 180.02562 * 10 9 8 12 12 C 1.50703 * 109.47545 * 180.02562 * 11 10 9 13 13 H 1.08003 * 119.99787 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99906 * 179.97438 * 12 11 10 15 15 N 1.31507 * 119.99889 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99589 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.47010 * 89.99844 * 16 14 12 18 18 H 1.48501 * 109.47168 * 209.99574 * 16 14 12 19 19 H 1.48495 * 109.47485 * 329.99816 * 16 14 12 20 20 C 1.53002 * 109.46690 * 60.00190 * 5 4 2 21 21 C 1.53002 * 109.47266 * 299.99618 * 20 5 4 22 22 H 1.09001 * 109.46913 * 180.02562 * 21 20 5 23 23 C 1.53001 * 109.47087 * 300.00357 * 21 20 5 24 24 C 1.52991 * 109.47387 * 120.00835 * 2 1 3 25 25 H 1.08993 * 109.46876 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46757 * 299.99327 * 1 2 3 27 27 H 1.09001 * 109.47099 * 59.99708 * 1 2 3 28 28 H 1.09001 * 109.47640 * 59.99932 * 4 2 1 29 29 H 1.08998 * 109.47021 * 299.99946 * 4 2 1 30 30 H 1.08998 * 109.47461 * 299.99981 * 5 4 2 31 31 H 1.09001 * 109.46544 * 183.95424 * 7 6 5 32 32 H 1.09001 * 109.47272 * 303.95030 * 7 6 5 33 33 H 1.09000 * 109.47033 * 63.95479 * 7 6 5 34 34 H 1.08992 * 109.47062 * 290.00772 * 8 6 5 35 35 H 1.09003 * 109.46753 * 50.00460 * 8 6 5 36 36 H 1.09001 * 109.47085 * 300.00035 * 9 8 6 37 37 H 1.08993 * 109.47201 * 60.00475 * 9 8 6 38 38 H 1.09004 * 109.47112 * 300.00527 * 10 9 8 39 39 H 1.09003 * 109.47557 * 59.99525 * 10 9 8 40 40 H 1.09008 * 109.46964 * 299.99728 * 11 10 9 41 41 H 1.08993 * 109.47442 * 59.99119 * 11 10 9 42 42 H 0.97005 * 119.99375 * 179.97438 * 15 14 12 43 43 H 1.08993 * 109.47392 * 60.00213 * 20 5 4 44 44 H 1.09005 * 109.46778 * 180.02562 * 20 5 4 45 45 H 1.08999 * 109.47105 * 179.97438 * 23 21 20 46 46 H 1.08996 * 109.47310 * 299.99615 * 23 21 20 47 47 H 1.09002 * 109.47389 * 59.99762 * 23 21 20 48 48 H 1.09004 * 109.46969 * 300.00131 * 24 2 1 49 49 H 1.09000 * 109.47709 * 59.99571 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5700 -0.7206 -1.2497 6 7 4.0597 -1.4135 -2.4490 7 6 3.5125 -0.8048 -3.6689 8 6 5.5281 -1.4331 -2.4830 9 6 6.0000 -2.3672 -3.5991 10 6 7.5294 -2.3882 -3.6340 11 6 8.0013 -3.3217 -4.7505 12 6 9.5078 -3.3429 -4.7846 13 1 10.0722 -2.7494 -4.0806 14 6 10.1655 -4.1199 -5.7145 15 7 9.4782 -4.8429 -6.5714 16 14 12.0328 -4.1454 -5.7572 17 1 12.5335 -5.2246 -4.8683 18 1 12.4929 -4.3955 -7.1468 19 1 12.5567 -2.8367 -5.2903 20 6 4.0804 -1.4417 -0.0006 21 6 3.5705 -0.7206 1.2488 22 1 3.9346 -1.2341 2.1387 23 6 4.0801 0.7221 1.2486 24 6 2.0401 -0.7214 1.2490 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 -0.3633 0.5139 -0.8900 28 1 1.6766 -0.2072 -2.1393 29 1 1.6766 -1.7488 -1.2495 30 1 3.9330 0.3072 -1.2499 31 1 3.8344 -1.3794 -4.5374 32 1 2.4237 -0.8034 -3.6174 33 1 3.8734 0.2199 -3.7570 34 1 5.9007 -0.4261 -2.6701 35 1 5.9089 -1.7894 -1.5257 36 1 5.6274 -3.3743 -3.4118 37 1 5.6192 -2.0110 -4.5562 38 1 7.9024 -1.3811 -3.8210 39 1 7.9100 -2.7445 -2.6768 40 1 7.6284 -4.3289 -4.5639 41 1 7.6208 -2.9650 -5.7076 42 1 9.9410 -5.3892 -7.2259 43 1 3.7175 -2.4694 -0.0005 44 1 5.1705 -1.4409 -0.0006 45 1 3.7165 1.2360 2.1385 46 1 5.1701 0.7225 1.2484 47 1 3.7164 1.2358 0.3587 48 1 1.6767 -0.2077 2.1391 49 1 1.6768 -1.7490 1.2490 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697692608.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:01:37 Heat of formation + Delta-G solvation = -58.402937 kcal Electronic energy + Delta-G solvation = -21078.193271 eV Core-core repulsion = 18230.623239 eV Total energy + Delta-G solvation = -2847.570032 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85285 -38.06666 -36.09439 -34.22051 -34.07263 -31.38736 -29.97412 -28.10822 -27.56926 -26.63204 -25.64148 -23.11128 -22.23522 -21.67540 -21.08027 -19.60466 -18.43818 -17.20243 -16.55507 -16.39224 -15.98029 -15.70341 -15.62680 -14.98852 -14.81155 -14.55346 -14.36989 -14.06877 -13.76268 -13.65226 -13.33895 -13.26936 -13.02297 -12.84394 -12.78620 -12.62020 -12.32322 -12.29652 -12.15469 -11.97498 -11.96644 -11.82855 -11.70639 -11.36523 -11.28845 -11.23063 -11.05374 -10.85467 -10.68599 -10.56008 -9.21214 -8.20323 -6.31972 1.38866 1.40859 1.51964 2.40446 2.91585 3.12273 3.71196 3.75313 3.96474 4.08983 4.15479 4.18652 4.27161 4.33572 4.41524 4.43841 4.53348 4.53937 4.59959 4.64357 4.68222 4.77485 4.80566 4.85424 4.88681 4.91343 4.97930 5.03957 5.07076 5.10064 5.19075 5.21692 5.22920 5.25979 5.28908 5.31739 5.37140 5.43749 5.48442 5.49910 5.54837 5.66229 5.76942 5.86164 6.15938 6.23822 6.27637 6.85437 7.37319 8.91721 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.036959 B = 0.002984 C = 0.002842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 757.417055 B = 9380.937224 C = 9848.767718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.072 0.928 4 C -0.103 4.103 5 C 0.086 3.914 6 N -0.550 5.550 7 C 0.019 3.981 8 C 0.064 3.936 9 C -0.102 4.102 10 C -0.096 4.096 11 C 0.025 3.975 12 C -0.545 4.545 13 H 0.060 0.940 14 C -0.003 4.003 15 N -0.935 5.935 16 Si 0.967 3.033 17 H -0.271 1.271 18 H -0.281 1.281 19 H -0.263 1.263 20 C -0.109 4.109 21 C -0.088 4.088 22 H 0.075 0.925 23 C -0.149 4.149 24 C -0.105 4.105 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.038 0.962 31 H 0.060 0.940 32 H 0.084 0.916 33 H 0.024 0.976 34 H 0.029 0.971 35 H 0.079 0.921 36 H 0.053 0.947 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.051 0.949 40 H -0.011 1.011 41 H -0.012 1.012 42 H 0.264 0.736 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.047 0.953 47 H 0.056 0.944 48 H 0.072 0.928 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.929 12.193 16.327 27.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.090 0.910 4 C -0.141 4.141 5 C -0.021 4.021 6 N -0.274 5.274 7 C -0.128 4.128 8 C -0.064 4.064 9 C -0.140 4.140 10 C -0.134 4.134 11 C -0.013 4.013 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.201 4.201 15 N -0.575 5.575 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.206 1.206 19 H -0.187 1.187 20 C -0.147 4.147 21 C -0.107 4.107 22 H 0.093 0.907 23 C -0.207 4.207 24 C -0.143 4.143 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.042 0.958 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.007 0.993 41 H 0.007 0.993 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.066 0.934 47 H 0.075 0.925 48 H 0.091 0.909 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -18.085 11.600 16.205 26.911 hybrid contribution 1.367 0.358 -0.677 1.567 sum -16.718 11.958 15.527 25.760 Atomic orbital electron populations 1.21794 0.94376 1.01920 1.02025 1.21136 0.95971 0.99521 0.94150 0.90983 1.21676 0.93111 1.01116 0.98204 1.21692 0.95890 0.95153 0.89394 1.62021 1.07712 1.54735 1.02881 1.22486 1.01083 0.96825 0.92452 1.22083 0.87325 0.97583 0.99382 1.21478 0.94891 0.99523 0.98088 1.21398 0.94529 0.98929 0.98558 1.19002 0.94877 0.93866 0.93512 1.21741 0.93406 1.26599 1.16532 0.92209 1.26032 1.04031 0.94949 0.95053 1.70109 1.37637 1.29532 1.20238 0.85423 0.79010 0.78974 0.77501 1.19650 1.20622 1.18693 1.21660 0.99950 0.99461 0.93607 1.21094 0.96043 0.96383 0.97165 0.90704 1.21929 1.00571 0.96039 1.02112 1.21615 0.94227 1.00689 0.97757 0.92808 0.91886 0.92628 0.91706 0.91972 0.94378 0.92118 0.89765 0.95773 0.95297 0.90281 0.92823 0.93024 0.93344 0.93067 0.99309 0.99325 0.92751 0.92067 0.92640 0.91732 0.93388 0.92546 0.90942 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16 2 C -0.09 -1.26 2.45 -10.79 -0.03 -1.28 16 3 H 0.07 1.02 6.43 -2.39 -0.02 1.01 16 4 C -0.10 -1.84 4.13 30.60 0.13 -1.71 16 5 C 0.09 1.83 1.67 44.92 0.08 1.91 16 6 N -0.55 -14.34 4.63 -897.03 -4.15 -18.49 16 7 C 0.02 0.47 8.95 127.69 1.14 1.61 16 8 C 0.06 1.88 4.77 86.30 0.41 2.29 16 9 C -0.10 -3.69 5.14 30.59 0.16 -3.53 16 10 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 11 C 0.02 1.36 4.97 29.85 0.15 1.51 16 12 C -0.54 -32.17 9.11 25.60 0.23 -31.93 16 13 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 14 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 15 N -0.93 -58.57 13.29 21.45 0.28 -58.29 16 16 Si 0.97 45.24 29.54 68.60 2.03 47.27 16 17 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 20 C -0.11 -2.24 4.52 30.60 0.14 -2.10 16 21 C -0.09 -1.40 3.20 -10.78 -0.03 -1.43 16 22 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 23 C -0.15 -2.25 8.50 71.98 0.61 -1.63 16 24 C -0.11 -1.46 4.73 30.61 0.14 -1.32 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 28 H 0.06 1.12 6.26 -2.39 -0.01 1.10 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.04 0.84 6.43 -2.39 -0.02 0.82 16 31 H 0.06 1.61 6.47 -2.39 -0.02 1.59 16 32 H 0.08 1.70 6.01 -2.39 -0.01 1.69 16 33 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.03 0.85 8.12 -2.39 -0.02 0.83 16 35 H 0.08 2.27 5.83 -2.39 -0.01 2.26 16 36 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.89 6.55 -2.39 -0.02 1.88 16 38 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 39 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 40 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 41 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 42 H 0.26 15.44 8.31 -92.70 -0.77 14.67 16 43 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 44 H 0.05 1.24 6.20 -2.38 -0.01 1.23 16 45 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 46 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.88 4.81 -2.39 -0.01 0.87 16 48 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 49 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -64.59 360.16 3.44 -61.15 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.87 Total: 10.75 kcal Atomic # 6 Polarization: -46.80 SS G_CDS: 4.41 Total: -42.39 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -3.87 Total: -76.78 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -64.59 3.44 -61.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697692608.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.749 kcal (2) G-P(sol) polarization free energy of solvation -64.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds