Wall clock time and date at job start Mon Mar 30 2020 07:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47021 * 2 1 4 4 H 1.08993 * 109.47264 * 302.66331 * 3 2 1 5 5 C 1.50709 * 109.47044 * 182.66941 * 3 2 1 6 6 H 1.07998 * 120.00048 * 240.00267 * 5 3 2 7 7 C 1.37874 * 119.99605 * 59.99704 * 5 3 2 8 8 N 1.31509 * 120.00353 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99567 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46962 * 90.00209 * 9 7 5 11 11 H 1.48500 * 109.47122 * 210.00058 * 9 7 5 12 12 H 1.48500 * 109.47213 * 330.00100 * 9 7 5 13 13 N 1.46897 * 109.47374 * 62.66977 * 3 2 1 14 14 C 1.46899 * 111.00045 * 62.63805 * 13 3 2 15 15 C 1.46904 * 111.00314 * 186.58950 * 13 3 2 16 16 H 1.09001 * 108.87259 * 298.67050 * 15 13 3 17 17 C 1.45549 * 108.88992 * 57.26746 * 15 13 3 18 18 C 1.54243 * 112.39867 * 182.59623 * 17 15 13 19 19 C 1.50480 * 108.52481 * 280.01684 * 18 17 15 20 20 C 1.54072 * 112.49798 * 94.15122 * 19 18 17 21 21 C 1.53000 * 108.81295 * 197.42409 * 20 19 18 22 22 C 1.52998 * 108.72590 * 79.08759 * 20 19 18 23 23 C 1.54068 * 112.81529 * 318.28386 * 20 19 18 24 24 C 1.50466 * 112.49813 * 318.28508 * 23 20 19 25 25 H 1.09004 * 109.47406 * 184.82134 * 1 2 3 26 26 H 1.08993 * 109.47509 * 304.82423 * 1 2 3 27 27 H 1.09003 * 109.46988 * 64.82383 * 1 2 3 28 28 H 1.08992 * 109.47254 * 239.99375 * 2 1 3 29 29 H 1.09001 * 109.46682 * 119.99620 * 2 1 3 30 30 H 0.97000 * 119.99604 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.46920 * 191.37263 * 14 13 3 32 32 H 1.09001 * 109.47403 * 311.37322 * 14 13 3 33 33 H 1.08997 * 109.47723 * 71.37766 * 14 13 3 34 34 H 1.08997 * 108.89603 * 303.34571 * 17 15 13 35 35 H 1.08992 * 108.89585 * 61.84483 * 17 15 13 36 36 H 1.08995 * 109.63086 * 39.73045 * 18 17 15 37 37 H 1.09002 * 109.63046 * 160.31134 * 18 17 15 38 38 H 1.08999 * 108.87619 * 333.37831 * 19 18 17 39 39 H 1.09001 * 108.80050 * 214.87718 * 19 18 17 40 40 H 1.09001 * 109.47176 * 183.29077 * 21 20 19 41 41 H 1.08999 * 109.47016 * 303.28870 * 21 20 19 42 42 H 1.09000 * 109.46872 * 63.28913 * 21 20 19 43 43 H 1.09000 * 109.47083 * 296.76475 * 22 20 19 44 44 H 1.09003 * 109.47226 * 56.76312 * 22 20 19 45 45 H 1.08994 * 109.47385 * 176.76926 * 22 20 19 46 46 H 1.09002 * 108.87569 * 197.50336 * 23 20 19 47 47 H 1.08999 * 108.87524 * 79.06444 * 23 20 19 48 48 H 1.08997 * 109.62830 * 334.44637 * 24 23 20 49 49 H 1.08996 * 109.62919 * 213.86507 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6382 1.9699 -0.8651 5 6 3.5456 1.4430 -0.0662 6 1 4.1208 1.8981 0.7265 7 6 4.1886 0.8622 -1.1387 8 7 3.4882 0.3074 -2.1036 9 14 6.0549 0.8623 -1.2203 10 1 6.5792 -0.3611 -0.5617 11 1 6.4882 0.8842 -2.6405 12 1 6.5809 2.0636 -0.5237 13 7 1.6037 2.1161 1.2303 14 6 2.1785 1.4687 2.4171 15 6 1.9402 3.5456 1.1956 16 1 3.0225 3.6514 1.1208 17 6 1.3257 4.1460 0.0207 18 6 1.6813 5.6393 -0.1304 19 6 0.8021 6.4361 0.7951 20 6 1.4721 6.7085 2.1556 21 6 0.3956 7.1189 3.1623 22 6 2.4611 7.8646 1.9932 23 6 2.2262 5.4831 2.7062 24 6 1.4639 4.2011 2.5080 25 1 -0.3634 -1.0240 0.0864 26 1 -0.3634 0.5868 0.8435 27 1 -0.3633 0.4372 -0.9301 28 1 1.8933 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8900 30 1 3.9407 -0.1008 -2.8583 31 1 1.6882 1.8508 3.3126 32 1 2.0278 0.3911 2.3521 33 1 3.2458 1.6840 2.4675 34 1 1.6639 3.6111 -0.8668 35 1 0.2431 4.0471 0.0991 36 1 2.7272 5.7952 0.1337 37 1 1.5097 5.9542 -1.1597 38 1 -0.1241 5.8862 0.9621 39 1 0.5656 7.3888 0.3214 40 1 0.8647 7.3708 4.1134 41 1 -0.1451 7.9859 2.7830 42 1 -0.2998 6.2921 3.3078 43 1 3.2494 7.5736 1.2990 44 1 1.9382 8.7381 1.6038 45 1 2.9002 8.1057 2.9612 46 1 2.4027 5.6273 3.7722 47 1 3.1878 5.4036 2.1992 48 1 0.3971 4.4155 2.4440 49 1 1.6554 3.5282 3.3438 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697842365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:22 Heat of formation + Delta-G solvation = -18.315817 kcal Electronic energy + Delta-G solvation = -22824.382903 eV Core-core repulsion = 19978.551179 eV Total energy + Delta-G solvation = -2845.831724 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.63686 -37.11296 -33.82375 -32.45550 -31.57155 -30.25014 -27.73147 -27.20976 -26.67324 -24.37809 -23.86206 -22.43026 -21.45851 -19.76641 -18.67513 -17.96975 -16.17921 -15.87084 -15.13830 -14.62335 -14.31925 -14.11325 -13.86176 -13.09846 -12.89379 -12.79839 -12.70650 -12.61212 -12.32957 -12.10293 -11.70020 -11.53909 -11.43431 -11.31748 -11.24972 -11.10770 -10.96118 -10.83530 -10.57008 -10.43389 -10.16524 -10.09101 -9.98703 -9.86743 -9.73988 -9.60506 -9.39545 -9.25846 -8.86773 -8.27550 -7.00451 -5.94337 -4.07223 3.27563 3.35063 3.37747 4.42173 4.77522 4.90205 4.94367 5.17325 5.29569 5.42508 5.48350 5.57997 5.64607 5.69509 5.81401 5.87841 5.89046 5.92634 6.06139 6.12433 6.15414 6.19368 6.24001 6.36088 6.42433 6.45719 6.50868 6.50987 6.52679 6.57365 6.61169 6.66676 6.73717 6.82474 6.85443 6.90289 7.09476 7.14880 7.19105 7.26474 7.45464 7.68876 7.81716 8.07888 8.24043 8.42368 8.55995 9.03734 9.59873 11.04181 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.006294 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.198100 B = 4447.464154 C = 5056.909133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.113 4.113 3 C 0.208 3.792 4 H 0.046 0.954 5 C -0.537 4.537 6 H 0.054 0.946 7 C 0.068 3.932 8 N -0.886 5.886 9 Si 0.883 3.117 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.538 5.538 14 C 0.033 3.967 15 C 0.099 3.901 16 H 0.039 0.961 17 C -0.112 4.112 18 C -0.114 4.114 19 C -0.103 4.103 20 C -0.062 4.062 21 C -0.140 4.140 22 C -0.142 4.142 23 C -0.105 4.105 24 C -0.115 4.115 25 H 0.023 0.977 26 H 0.050 0.950 27 H 0.037 0.963 28 H 0.090 0.910 29 H 0.032 0.968 30 H 0.260 0.740 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.022 0.978 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.061 0.939 39 H 0.050 0.950 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.060 0.940 48 H 0.062 0.938 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.826 10.539 7.387 13.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.151 4.151 3 C 0.102 3.898 4 H 0.064 0.936 5 C -0.577 4.577 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.525 5.525 9 Si 0.711 3.289 10 H -0.208 1.208 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.261 5.261 14 C -0.115 4.115 15 C -0.010 4.010 16 H 0.057 0.943 17 C -0.150 4.150 18 C -0.152 4.152 19 C -0.141 4.141 20 C -0.062 4.062 21 C -0.198 4.198 22 C -0.199 4.199 23 C -0.143 4.143 24 C -0.153 4.153 25 H 0.042 0.958 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.051 0.949 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.040 0.960 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.079 0.921 48 H 0.081 0.919 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.322 10.396 7.233 13.738 hybrid contribution 2.090 -0.031 -0.176 2.098 sum -3.232 10.365 7.058 12.950 Atomic orbital electron populations 1.21720 0.98949 0.98387 1.00587 1.21632 0.92152 0.99439 1.01860 1.19369 0.92519 0.90856 0.87099 0.93641 1.21740 0.92878 1.36996 1.06054 0.92775 1.24886 0.97651 0.95205 0.95639 1.69871 1.34800 1.37935 1.09899 0.86740 0.86653 0.78318 0.77155 1.20791 1.21248 1.20148 1.62556 1.58285 1.01175 1.04110 1.22216 0.96953 0.99464 0.92893 1.20271 0.97923 0.89216 0.93552 0.94317 1.20567 1.00482 0.94209 0.99699 1.21290 0.99932 0.95714 0.98300 1.21423 0.99049 0.99440 0.94178 1.20966 0.95100 0.95041 0.95055 1.21937 0.98578 1.00851 0.98401 1.21955 0.99155 0.97603 1.01192 1.21387 0.99213 0.93999 0.99670 1.21519 1.00017 0.95415 0.98305 0.95776 0.93062 0.94418 0.89164 0.94894 0.93003 0.93956 0.92061 0.95964 0.90541 0.92563 0.91947 0.92530 0.92009 0.93146 0.93165 0.93248 0.92567 0.92599 0.93137 0.93221 0.93054 0.92126 0.91927 0.91755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.85 9.84 37.16 0.37 -2.48 16 2 C -0.11 -2.66 5.05 -26.73 -0.14 -2.80 16 3 C 0.21 5.01 1.42 -68.87 -0.10 4.91 16 4 H 0.05 1.21 5.79 -51.93 -0.30 0.91 16 5 C -0.54 -14.20 7.17 -34.44 -0.25 -14.45 16 6 H 0.05 1.46 5.86 -52.49 -0.31 1.15 16 7 C 0.07 1.85 5.30 -17.82 -0.09 1.75 16 8 N -0.89 -24.78 11.30 55.43 0.63 -24.15 16 9 Si 0.88 21.18 29.54 -169.99 -5.02 16.16 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.54 -11.14 3.85 -231.77 -0.89 -12.03 16 14 C 0.03 0.66 8.27 60.06 0.50 1.15 16 15 C 0.10 1.85 1.27 -70.58 -0.09 1.76 16 16 H 0.04 0.83 6.21 -51.93 -0.32 0.51 16 17 C -0.11 -2.03 4.36 -29.59 -0.13 -2.15 16 18 C -0.11 -1.72 5.56 -27.34 -0.15 -1.87 16 19 C -0.10 -1.33 4.08 -27.43 -0.11 -1.45 16 20 C -0.06 -0.74 0.50 -153.39 -0.08 -0.82 16 21 C -0.14 -1.51 8.11 37.16 0.30 -1.20 16 22 C -0.14 -1.57 8.12 37.16 0.30 -1.27 16 23 C -0.10 -1.43 4.08 -27.44 -0.11 -1.54 16 24 C -0.11 -1.78 4.95 -27.35 -0.14 -1.92 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 1.02 7.54 -51.93 -0.39 0.62 16 27 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.09 2.39 6.00 -51.93 -0.31 2.08 16 29 H 0.03 0.77 6.12 -51.93 -0.32 0.45 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.04 0.73 6.21 -51.93 -0.32 0.40 16 32 H 0.06 1.24 5.84 -51.93 -0.30 0.94 16 33 H 0.02 0.46 6.73 -51.93 -0.35 0.11 16 34 H 0.08 1.63 5.77 -51.93 -0.30 1.33 16 35 H 0.06 1.00 7.47 -51.93 -0.39 0.61 16 36 H 0.06 0.98 6.23 -51.93 -0.32 0.65 16 37 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.06 0.83 6.47 -51.93 -0.34 0.49 16 39 H 0.05 0.59 7.90 -51.93 -0.41 0.18 16 40 H 0.05 0.50 8.11 -51.93 -0.42 0.08 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.62 7.38 -51.93 -0.38 0.24 16 43 H 0.05 0.65 7.40 -51.93 -0.38 0.27 16 44 H 0.05 0.51 8.04 -51.93 -0.42 0.09 16 45 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.05 0.65 7.96 -51.93 -0.41 0.24 16 47 H 0.06 0.91 6.45 -51.93 -0.33 0.58 16 48 H 0.06 0.95 6.21 -51.93 -0.32 0.63 16 49 H 0.06 1.01 5.53 -51.93 -0.29 0.72 16 LS Contribution 340.32 15.07 5.13 5.13 Total: -1.00 -26.45 340.32 -8.97 -35.42 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -8.90 Total: 1.85 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 0.09 Total: -22.38 kcal Atomic # 7 Polarization: -35.92 SS G_CDS: -0.27 Total: -36.18 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -26.45 -8.97 -35.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697842365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.108 kcal (2) G-P(sol) polarization free energy of solvation -26.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds