Wall clock time and date at job start Mon Mar 30 2020 07:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52993 * 109.47021 * 2 1 4 4 H 1.08993 * 109.47264 * 302.66331 * 3 2 1 5 5 C 1.50709 * 109.47044 * 182.66941 * 3 2 1 6 6 H 1.07998 * 120.00048 * 240.00267 * 5 3 2 7 7 C 1.37874 * 119.99605 * 59.99704 * 5 3 2 8 8 N 1.31509 * 120.00353 * 359.97438 * 7 5 3 9 9 Si 1.86809 * 119.99567 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.46962 * 90.00209 * 9 7 5 11 11 H 1.48500 * 109.47122 * 210.00058 * 9 7 5 12 12 H 1.48500 * 109.47213 * 330.00100 * 9 7 5 13 13 N 1.46897 * 109.47374 * 62.66977 * 3 2 1 14 14 C 1.46899 * 111.00045 * 62.63805 * 13 3 2 15 15 C 1.46904 * 111.00314 * 186.58950 * 13 3 2 16 16 H 1.09001 * 108.87259 * 298.67050 * 15 13 3 17 17 C 1.45549 * 108.88992 * 57.26746 * 15 13 3 18 18 C 1.54243 * 112.39867 * 182.59623 * 17 15 13 19 19 C 1.50480 * 108.52481 * 280.01684 * 18 17 15 20 20 C 1.54072 * 112.49798 * 94.15122 * 19 18 17 21 21 C 1.53000 * 108.81295 * 197.42409 * 20 19 18 22 22 C 1.52998 * 108.72590 * 79.08759 * 20 19 18 23 23 C 1.54068 * 112.81529 * 318.28386 * 20 19 18 24 24 C 1.50466 * 112.49813 * 318.28508 * 23 20 19 25 25 H 1.09004 * 109.47406 * 184.82134 * 1 2 3 26 26 H 1.08993 * 109.47509 * 304.82423 * 1 2 3 27 27 H 1.09003 * 109.46988 * 64.82383 * 1 2 3 28 28 H 1.08992 * 109.47254 * 239.99375 * 2 1 3 29 29 H 1.09001 * 109.46682 * 119.99620 * 2 1 3 30 30 H 0.97000 * 119.99604 * 179.97438 * 8 7 5 31 31 H 1.09003 * 109.46920 * 191.37263 * 14 13 3 32 32 H 1.09001 * 109.47403 * 311.37322 * 14 13 3 33 33 H 1.08997 * 109.47723 * 71.37766 * 14 13 3 34 34 H 1.08997 * 108.89603 * 303.34571 * 17 15 13 35 35 H 1.08992 * 108.89585 * 61.84483 * 17 15 13 36 36 H 1.08995 * 109.63086 * 39.73045 * 18 17 15 37 37 H 1.09002 * 109.63046 * 160.31134 * 18 17 15 38 38 H 1.08999 * 108.87619 * 333.37831 * 19 18 17 39 39 H 1.09001 * 108.80050 * 214.87718 * 19 18 17 40 40 H 1.09001 * 109.47176 * 183.29077 * 21 20 19 41 41 H 1.08999 * 109.47016 * 303.28870 * 21 20 19 42 42 H 1.09000 * 109.46872 * 63.28913 * 21 20 19 43 43 H 1.09000 * 109.47083 * 296.76475 * 22 20 19 44 44 H 1.09003 * 109.47226 * 56.76312 * 22 20 19 45 45 H 1.08994 * 109.47385 * 176.76926 * 22 20 19 46 46 H 1.09002 * 108.87569 * 197.50336 * 23 20 19 47 47 H 1.08999 * 108.87524 * 79.06444 * 23 20 19 48 48 H 1.08997 * 109.62830 * 334.44637 * 24 23 20 49 49 H 1.08996 * 109.62919 * 213.86507 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4424 0.0000 4 1 1.6382 1.9699 -0.8651 5 6 3.5456 1.4430 -0.0662 6 1 4.1208 1.8981 0.7265 7 6 4.1886 0.8622 -1.1387 8 7 3.4882 0.3074 -2.1036 9 14 6.0549 0.8623 -1.2203 10 1 6.5792 -0.3611 -0.5617 11 1 6.4882 0.8842 -2.6405 12 1 6.5809 2.0636 -0.5237 13 7 1.6037 2.1161 1.2303 14 6 2.1785 1.4687 2.4171 15 6 1.9402 3.5456 1.1956 16 1 3.0225 3.6514 1.1208 17 6 1.3257 4.1460 0.0207 18 6 1.6813 5.6393 -0.1304 19 6 0.8021 6.4361 0.7951 20 6 1.4721 6.7085 2.1556 21 6 0.3956 7.1189 3.1623 22 6 2.4611 7.8646 1.9932 23 6 2.2262 5.4831 2.7062 24 6 1.4639 4.2011 2.5080 25 1 -0.3634 -1.0240 0.0864 26 1 -0.3634 0.5868 0.8435 27 1 -0.3633 0.4372 -0.9301 28 1 1.8933 -0.5139 -0.8898 29 1 1.8932 -0.5138 0.8900 30 1 3.9407 -0.1008 -2.8583 31 1 1.6882 1.8508 3.3126 32 1 2.0278 0.3911 2.3521 33 1 3.2458 1.6840 2.4675 34 1 1.6639 3.6111 -0.8668 35 1 0.2431 4.0471 0.0991 36 1 2.7272 5.7952 0.1337 37 1 1.5097 5.9542 -1.1597 38 1 -0.1241 5.8862 0.9621 39 1 0.5656 7.3888 0.3214 40 1 0.8647 7.3708 4.1134 41 1 -0.1451 7.9859 2.7830 42 1 -0.2998 6.2921 3.3078 43 1 3.2494 7.5736 1.2990 44 1 1.9382 8.7381 1.6038 45 1 2.9002 8.1057 2.9612 46 1 2.4027 5.6273 3.7722 47 1 3.1878 5.4036 2.1992 48 1 0.3971 4.4155 2.4440 49 1 1.6554 3.5282 3.3438 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697842365.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:21 Heat of formation + Delta-G solvation = -30.950183 kcal Electronic energy + Delta-G solvation = -22824.930771 eV Core-core repulsion = 19978.551179 eV Total energy + Delta-G solvation = -2846.379591 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.98094 -38.60488 -35.42864 -34.04682 -33.26752 -31.74844 -29.15617 -28.46162 -28.05140 -25.95609 -25.37996 -24.02341 -22.73304 -21.37432 -20.49004 -19.02360 -18.17675 -17.43079 -16.69569 -16.16411 -15.59341 -15.52012 -15.34754 -14.78117 -14.36948 -14.23135 -14.01735 -13.92164 -13.71995 -13.27622 -13.22446 -13.00914 -12.96824 -12.68596 -12.62792 -12.57587 -12.44844 -12.30489 -12.28487 -12.10810 -11.66035 -11.56017 -11.42860 -11.24685 -11.15506 -11.04936 -10.95175 -10.89501 -10.64128 -10.30124 -8.83600 -8.00050 -6.22199 1.33453 1.35820 1.43732 2.39309 3.16746 3.40967 3.77242 3.87879 4.03059 4.22002 4.32886 4.40028 4.40750 4.52728 4.59445 4.72267 4.73565 4.79027 4.84548 4.85753 4.90327 4.93253 4.94342 4.96659 5.04104 5.11054 5.15971 5.19351 5.24298 5.28492 5.32190 5.36704 5.38734 5.45414 5.46771 5.47868 5.56089 5.58154 5.61712 5.64610 5.71524 5.75182 5.86261 6.13247 6.28023 6.46295 6.79090 7.01008 7.47913 8.93407 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.006294 C = 0.005536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.198100 B = 4447.464154 C = 5056.909133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.109 4.109 3 C 0.216 3.784 4 H 0.017 0.983 5 C -0.543 4.543 6 H 0.043 0.957 7 C 0.023 3.977 8 N -0.910 5.910 9 Si 0.938 3.062 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.276 1.276 13 N -0.535 5.535 14 C 0.038 3.962 15 C 0.103 3.897 16 H 0.005 0.995 17 C -0.105 4.105 18 C -0.107 4.107 19 C -0.100 4.100 20 C -0.060 4.060 21 C -0.137 4.137 22 C -0.140 4.140 23 C -0.103 4.103 24 C -0.102 4.102 25 H 0.044 0.956 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.030 0.970 30 H 0.260 0.740 31 H 0.074 0.926 32 H 0.054 0.946 33 H 0.004 0.996 34 H 0.034 0.966 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.060 0.940 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.042 0.958 44 H 0.063 0.937 45 H 0.058 0.942 46 H 0.067 0.933 47 H 0.041 0.959 48 H 0.072 0.928 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.613 12.061 9.050 16.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.147 4.147 3 C 0.108 3.892 4 H 0.035 0.965 5 C -0.582 4.582 6 H 0.061 0.939 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.765 3.235 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.201 1.201 13 N -0.258 5.258 14 C -0.111 4.111 15 C -0.006 4.006 16 H 0.023 0.977 17 C -0.143 4.143 18 C -0.145 4.145 19 C -0.137 4.137 20 C -0.060 4.060 21 C -0.194 4.194 22 C -0.197 4.197 23 C -0.140 4.140 24 C -0.140 4.140 25 H 0.063 0.937 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.022 0.978 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.059 0.941 48 H 0.090 0.910 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.111 11.923 8.908 16.089 hybrid contribution 2.338 -0.505 -0.698 2.492 sum -3.772 11.419 8.210 14.561 Atomic orbital electron populations 1.21570 0.96278 0.99854 1.00624 1.21493 0.94505 0.98589 1.00163 1.19121 0.91114 0.91164 0.87774 0.96489 1.21949 0.94303 1.36378 1.05614 0.93901 1.25536 1.01396 0.95216 0.95546 1.69993 1.36101 1.38631 1.10286 0.85863 0.82234 0.78224 0.77153 1.20303 1.20847 1.20134 1.62551 1.57898 1.02173 1.03173 1.22227 0.96140 0.99155 0.93541 1.20336 0.96019 0.88337 0.95871 0.97673 1.20487 1.00336 0.95908 0.97539 1.21228 0.99990 0.93833 0.99478 1.21380 0.98254 0.99758 0.94306 1.20950 0.95673 0.94550 0.94846 1.21896 0.97976 1.01219 0.98290 1.21933 0.98691 0.97566 1.01527 1.21359 0.98206 0.93863 1.00620 1.21414 1.00653 0.96051 0.95861 0.93692 0.92191 0.94971 0.92222 0.95108 0.93074 0.90736 0.92741 0.97764 0.94765 0.92199 0.92872 0.92076 0.92136 0.91301 0.92209 0.92029 0.92842 0.93854 0.91778 0.92297 0.91393 0.94055 0.90976 0.91638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.09 9.84 71.98 0.71 -4.38 16 2 C -0.11 -5.26 5.05 30.59 0.15 -5.11 16 3 C 0.22 10.73 1.42 44.17 0.06 10.80 16 4 H 0.02 0.96 5.79 -2.39 -0.01 0.95 16 5 C -0.54 -29.71 7.17 25.60 0.18 -29.52 16 6 H 0.04 2.40 5.86 -2.91 -0.02 2.38 16 7 C 0.02 1.26 5.30 84.65 0.45 1.70 16 8 N -0.91 -52.49 11.30 21.45 0.24 -52.24 16 9 Si 0.94 44.38 29.54 68.60 2.03 46.41 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 12 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 13 N -0.53 -22.37 3.85 -887.20 -3.42 -25.78 16 14 C 0.04 1.47 8.27 127.69 1.06 2.53 16 15 C 0.10 3.90 1.27 43.06 0.05 3.95 16 16 H 0.01 0.24 6.21 -2.39 -0.01 0.22 16 17 C -0.11 -3.89 4.36 28.74 0.13 -3.76 16 18 C -0.11 -3.21 5.56 30.20 0.17 -3.04 16 19 C -0.10 -2.36 4.08 30.14 0.12 -2.23 16 20 C -0.06 -1.30 0.50 -51.46 -0.03 -1.32 16 21 C -0.14 -2.43 8.11 71.98 0.58 -1.85 16 22 C -0.14 -2.74 8.12 71.98 0.58 -2.16 16 23 C -0.10 -2.63 4.08 30.14 0.12 -2.50 16 24 C -0.10 -3.02 4.95 30.19 0.15 -2.87 16 25 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 26 H 0.06 2.30 7.54 -2.39 -0.02 2.28 16 27 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 3.26 6.00 -2.39 -0.01 3.25 16 29 H 0.03 1.46 6.12 -2.39 -0.01 1.45 16 30 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 31 H 0.07 2.42 6.21 -2.39 -0.01 2.40 16 32 H 0.05 2.18 5.84 -2.39 -0.01 2.17 16 33 H 0.00 0.16 6.73 -2.39 -0.02 0.15 16 34 H 0.03 1.54 5.77 -2.39 -0.01 1.53 16 35 H 0.06 2.14 7.47 -2.39 -0.02 2.12 16 36 H 0.05 1.68 6.23 -2.39 -0.01 1.67 16 37 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.06 1.47 6.47 -2.39 -0.02 1.45 16 39 H 0.07 1.41 7.90 -2.39 -0.02 1.39 16 40 H 0.06 0.96 8.11 -2.39 -0.02 0.94 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.05 0.99 7.38 -2.39 -0.02 0.97 16 43 H 0.04 0.95 7.40 -2.39 -0.02 0.93 16 44 H 0.06 1.09 8.04 -2.39 -0.02 1.07 16 45 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 46 H 0.07 1.53 7.96 -2.39 -0.02 1.51 16 47 H 0.04 1.22 6.45 -2.39 -0.02 1.21 16 48 H 0.07 2.02 6.21 -2.39 -0.01 2.00 16 49 H 0.07 1.91 5.53 -2.39 -0.01 1.90 16 Total: -1.00 -58.33 340.32 4.25 -54.08 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.90 Total: 17.30 kcal Atomic # 6 Polarization: -44.26 SS G_CDS: 4.50 Total: -39.76 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -3.17 Total: -78.03 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -58.33 4.25 -54.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697842365.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.132 kcal (2) G-P(sol) polarization free energy of solvation -58.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds