Wall clock time and date at job start Mon Mar 30 2020 07:43:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47175 * 2 1 4 4 H 1.09000 * 109.47204 * 57.09890 * 3 2 1 5 5 C 1.50704 * 109.46831 * 177.09824 * 3 2 1 6 6 H 1.07998 * 119.99823 * 120.00042 * 5 3 2 7 7 C 1.37883 * 119.99946 * 299.99597 * 5 3 2 8 8 N 1.31515 * 119.99713 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99946 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47203 * 90.00188 * 9 7 5 11 11 H 1.48504 * 109.47097 * 210.00328 * 9 7 5 12 12 H 1.48495 * 109.47238 * 330.00283 * 9 7 5 13 13 N 1.46897 * 109.47130 * 297.09389 * 3 2 1 14 14 C 1.46900 * 111.00316 * 298.41659 * 13 3 2 15 15 C 1.46900 * 110.99848 * 174.46136 * 13 3 2 16 16 H 1.09004 * 109.62542 * 61.61832 * 15 13 3 17 17 C 1.54234 * 109.63238 * 301.22972 * 15 13 3 18 18 C 1.45538 * 112.40789 * 160.29850 * 17 15 13 19 19 C 1.54241 * 112.40461 * 61.94377 * 18 17 15 20 20 C 1.50479 * 108.51825 * 280.01228 * 19 18 17 21 21 C 1.53000 * 108.87476 * 214.92588 * 20 19 18 22 22 C 1.52998 * 108.87899 * 333.46860 * 20 19 18 23 23 C 1.54070 * 112.49974 * 94.14897 * 20 19 18 24 24 C 1.50477 * 109.62800 * 182.19898 * 15 13 3 25 25 H 1.09000 * 109.46641 * 305.05380 * 1 2 3 26 26 H 1.08997 * 109.46778 * 65.05059 * 1 2 3 27 27 H 1.08991 * 109.47468 * 185.05484 * 1 2 3 28 28 H 1.09005 * 109.46795 * 239.99424 * 2 1 3 29 29 H 1.08998 * 109.46777 * 119.99946 * 2 1 3 30 30 H 0.96999 * 119.99784 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.47037 * 52.60243 * 14 13 3 32 32 H 1.09000 * 109.47100 * 172.60228 * 14 13 3 33 33 H 1.09001 * 109.47166 * 292.60633 * 14 13 3 34 34 H 1.09004 * 108.89501 * 281.06007 * 17 15 13 35 35 H 1.09000 * 108.89184 * 39.54742 * 17 15 13 36 36 H 1.09010 * 108.89508 * 182.69001 * 18 17 15 37 37 H 1.08996 * 108.90090 * 301.18877 * 18 17 15 38 38 H 1.08999 * 109.62841 * 39.71671 * 19 18 17 39 39 H 1.08996 * 109.62936 * 160.10784 * 19 18 17 40 40 H 1.09001 * 109.47147 * 60.00234 * 21 20 19 41 41 H 1.09001 * 109.47063 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47506 * 299.99740 * 21 20 19 43 43 H 1.08998 * 109.46959 * 47.51905 * 22 20 19 44 44 H 1.08998 * 109.47301 * 167.51587 * 22 20 19 45 45 H 1.08999 * 109.47453 * 287.51891 * 22 20 19 46 46 H 1.09003 * 108.81366 * 79.13968 * 23 20 19 47 47 H 1.08991 * 108.81801 * 197.41667 * 23 20 19 48 48 H 1.08996 * 108.87697 * 334.64391 * 24 15 13 49 49 H 1.09007 * 108.87331 * 93.08589 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6349 1.9711 0.8628 5 6 3.5454 1.4430 0.0719 6 1 4.1236 1.8971 -0.7191 7 6 4.1843 0.8638 1.1478 8 7 3.4801 0.3104 2.1108 9 14 6.0502 0.8650 1.2373 10 1 6.5112 2.0894 1.9398 11 1 6.5109 -0.3353 1.9804 12 1 6.6117 0.8420 -0.1372 13 7 1.6086 2.1144 -1.2330 14 6 2.1678 1.4502 -2.4179 15 6 1.9672 3.5387 -1.2094 16 1 3.0504 3.6425 -1.1454 17 6 1.3087 4.2189 0.0082 18 6 1.9584 5.4722 0.3622 19 6 1.8746 6.5177 -0.7687 20 6 2.9335 6.2026 -1.7903 21 6 3.4706 7.5140 -2.3672 22 6 4.0799 5.4592 -1.1019 23 6 2.3994 5.3323 -2.9440 24 6 1.4645 4.2073 -2.4603 25 1 -0.3632 0.5903 0.8413 26 1 -0.3633 0.4335 -0.9318 27 1 -0.3634 -1.0236 0.0905 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9296 -0.0974 2.8675 31 1 1.9391 0.3851 -2.3793 32 1 1.7304 1.8833 -3.3175 33 1 3.2487 1.5893 -2.4362 34 1 0.2616 4.4165 -0.2214 35 1 1.3595 3.5418 0.8609 36 1 1.4805 5.8779 1.2540 37 1 3.0072 5.2758 0.5843 38 1 0.8907 6.4739 -1.2358 39 1 2.0416 7.5140 -0.3594 40 1 3.8993 8.1151 -1.5654 41 1 4.2394 7.2968 -3.1088 42 1 2.6561 8.0643 -2.8383 43 1 3.6741 4.6598 -0.4819 44 1 4.7418 5.0335 -1.8562 45 1 4.6407 6.1544 -0.4772 46 1 1.8528 5.9684 -3.6403 47 1 3.2444 4.8861 -3.4682 48 1 1.3753 3.4596 -3.2483 49 1 0.4785 4.6284 -2.2631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697842372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:24 Heat of formation + Delta-G solvation = 12.410284 kcal Electronic energy + Delta-G solvation = -23299.856664 eV Core-core repulsion = 20455.357324 eV Total energy + Delta-G solvation = -2844.499340 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11540 -36.93230 -33.54199 -32.68151 -31.58820 -30.17716 -27.59375 -27.12476 -26.65644 -24.69239 -23.98512 -22.43344 -21.43308 -19.50294 -18.70038 -17.73226 -16.19184 -16.00689 -15.30389 -14.68357 -14.24992 -13.97592 -13.67894 -13.26293 -13.16625 -12.74932 -12.59980 -12.46100 -12.28057 -12.02326 -11.77201 -11.49230 -11.34199 -11.23088 -11.15286 -10.91808 -10.78029 -10.71053 -10.56945 -10.34856 -10.25157 -10.01019 -9.97076 -9.76885 -9.64390 -9.40931 -9.23361 -9.17705 -8.83786 -8.26752 -6.91991 -5.94086 -4.07354 3.26917 3.34792 3.37472 4.41703 4.91706 4.96889 5.00932 5.23070 5.28966 5.49380 5.53087 5.62132 5.72411 5.75381 5.85973 5.91651 5.97500 6.04396 6.11758 6.13394 6.25078 6.30973 6.35751 6.38701 6.46728 6.48505 6.51079 6.55950 6.62194 6.65055 6.71264 6.75571 6.77527 6.79703 6.88296 6.92809 7.04273 7.16676 7.24902 7.28462 7.45038 7.69528 7.81401 8.08095 8.24905 8.44031 8.57483 9.04044 9.59684 11.03921 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.007846 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.598183 B = 3567.741941 C = 4361.479003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.113 4.113 3 C 0.210 3.790 4 H 0.046 0.954 5 C -0.537 4.537 6 H 0.054 0.946 7 C 0.069 3.931 8 N -0.886 5.886 9 Si 0.881 3.119 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.537 5.537 14 C 0.032 3.968 15 C 0.078 3.922 16 H 0.072 0.928 17 C -0.112 4.112 18 C -0.133 4.133 19 C -0.104 4.104 20 C -0.060 4.060 21 C -0.140 4.140 22 C -0.177 4.177 23 C -0.102 4.102 24 C -0.117 4.117 25 H 0.038 0.962 26 H 0.045 0.955 27 H 0.023 0.977 28 H 0.033 0.967 29 H 0.090 0.910 30 H 0.260 0.740 31 H 0.060 0.940 32 H 0.042 0.958 33 H 0.024 0.976 34 H 0.048 0.952 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.049 0.951 43 H 0.109 0.891 44 H 0.045 0.955 45 H 0.045 0.955 46 H 0.051 0.949 47 H 0.053 0.947 48 H 0.065 0.935 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 9.580 -6.675 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.152 4.152 3 C 0.104 3.896 4 H 0.064 0.936 5 C -0.576 4.576 6 H 0.073 0.927 7 C -0.133 4.133 8 N -0.524 5.524 9 Si 0.709 3.291 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.201 1.201 13 N -0.261 5.261 14 C -0.117 4.117 15 C -0.030 4.030 16 H 0.090 0.910 17 C -0.150 4.150 18 C -0.170 4.170 19 C -0.141 4.141 20 C -0.060 4.060 21 C -0.198 4.198 22 C -0.233 4.233 23 C -0.140 4.140 24 C -0.155 4.155 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.042 0.958 28 H 0.051 0.949 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.061 0.939 33 H 0.042 0.958 34 H 0.066 0.934 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.127 0.873 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.070 0.930 47 H 0.072 0.928 48 H 0.084 0.916 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.202 9.443 -6.526 11.917 hybrid contribution 2.031 0.026 0.117 2.034 sum -1.172 9.469 -6.409 11.494 Atomic orbital electron populations 1.21688 0.98938 0.98187 1.00527 1.21643 0.92136 0.99496 1.01897 1.19356 0.92516 0.90706 0.87068 0.93628 1.21733 0.92882 1.37088 1.05895 0.92748 1.24881 0.97529 0.95209 0.95708 1.69871 1.34765 1.37962 1.09838 0.86777 0.86765 0.77538 0.78037 1.20741 1.21277 1.20115 1.62431 1.58567 1.01062 1.03995 1.22225 0.97385 0.99157 0.92901 1.21559 0.99597 0.88754 0.93137 0.91050 1.20512 0.98642 0.96198 0.99631 1.20779 1.03160 0.95700 0.97372 1.21384 0.98582 0.98133 0.96022 1.20211 0.95921 0.94584 0.95301 1.21998 1.00352 0.96908 1.00495 1.22889 0.97532 1.01734 1.01190 1.21975 0.98954 0.96511 0.96526 1.21550 0.98426 0.96788 0.98712 0.94252 0.93558 0.95794 0.94872 0.89136 0.93008 0.92087 0.93934 0.95792 0.93368 0.90509 0.93237 0.89959 0.92114 0.92703 0.93012 0.93207 0.93196 0.87334 0.93553 0.93564 0.93026 0.92784 0.91624 0.92738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.72 37.16 0.36 -2.41 16 2 C -0.11 -2.66 5.02 -26.73 -0.13 -2.79 16 3 C 0.21 4.98 1.54 -68.87 -0.11 4.87 16 4 H 0.05 1.20 5.66 -51.93 -0.29 0.90 16 5 C -0.54 -13.87 7.15 -34.44 -0.25 -14.11 16 6 H 0.05 1.43 5.84 -52.49 -0.31 1.12 16 7 C 0.07 1.84 5.30 -17.82 -0.09 1.74 16 8 N -0.89 -24.48 11.30 55.43 0.63 -23.85 16 9 Si 0.88 20.91 29.54 -169.99 -5.02 15.89 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 N -0.54 -11.01 4.07 -229.03 -0.93 -11.94 16 14 C 0.03 0.62 8.52 60.06 0.51 1.13 16 15 C 0.08 1.43 1.29 -68.33 -0.09 1.34 16 16 H 0.07 1.44 3.01 -51.93 -0.16 1.28 16 17 C -0.11 -2.01 4.71 -29.60 -0.14 -2.15 16 18 C -0.13 -2.07 5.14 -29.60 -0.15 -2.22 16 19 C -0.10 -1.40 5.01 -27.34 -0.14 -1.54 16 20 C -0.06 -0.81 0.72 -155.21 -0.11 -0.92 16 21 C -0.14 -1.62 7.98 37.16 0.30 -1.33 16 22 C -0.18 -2.73 6.33 37.16 0.24 -2.50 16 23 C -0.10 -1.41 4.83 -25.62 -0.12 -1.53 16 24 C -0.12 -1.84 4.87 -27.44 -0.13 -1.98 16 25 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.05 0.91 7.84 -51.93 -0.41 0.50 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.03 0.77 6.14 -51.93 -0.32 0.45 16 29 H 0.09 2.38 6.00 -51.93 -0.31 2.07 16 30 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.06 1.21 5.93 -51.93 -0.31 0.91 16 32 H 0.04 0.73 5.95 -51.93 -0.31 0.42 16 33 H 0.02 0.50 6.64 -51.93 -0.35 0.15 16 34 H 0.05 0.83 7.47 -51.93 -0.39 0.44 16 35 H 0.08 1.60 5.45 -51.93 -0.28 1.32 16 36 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 37 H 0.08 1.38 4.83 -51.93 -0.25 1.13 16 38 H 0.06 0.81 6.98 -51.93 -0.36 0.45 16 39 H 0.05 0.67 7.68 -51.93 -0.40 0.27 16 40 H 0.05 0.57 8.06 -51.93 -0.42 0.15 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.11 1.94 2.67 -51.93 -0.14 1.81 16 44 H 0.05 0.72 7.76 -51.93 -0.40 0.31 16 45 H 0.05 0.66 8.03 -51.93 -0.42 0.24 16 46 H 0.05 0.64 7.98 -51.93 -0.41 0.23 16 47 H 0.05 0.77 7.72 -51.93 -0.40 0.36 16 48 H 0.07 1.05 5.35 -51.93 -0.28 0.77 16 49 H 0.05 0.84 6.63 -51.92 -0.34 0.50 16 LS Contribution 333.00 15.07 5.02 5.02 Total: -1.00 -25.93 333.00 -8.87 -34.80 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.50 Total: 4.48 kcal Atomic # 6 Polarization: -24.33 SS G_CDS: -0.06 Total: -24.39 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: -0.30 Total: -35.80 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.93 -8.87 -34.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697842372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.208 kcal (2) G-P(sol) polarization free energy of solvation -25.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds