Wall clock time and date at job start Mon Mar 30 2020 07:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47175 * 2 1 4 4 H 1.09000 * 109.47204 * 57.09890 * 3 2 1 5 5 C 1.50704 * 109.46831 * 177.09824 * 3 2 1 6 6 H 1.07998 * 119.99823 * 120.00042 * 5 3 2 7 7 C 1.37883 * 119.99946 * 299.99597 * 5 3 2 8 8 N 1.31515 * 119.99713 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99946 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47203 * 90.00188 * 9 7 5 11 11 H 1.48504 * 109.47097 * 210.00328 * 9 7 5 12 12 H 1.48495 * 109.47238 * 330.00283 * 9 7 5 13 13 N 1.46897 * 109.47130 * 297.09389 * 3 2 1 14 14 C 1.46900 * 111.00316 * 298.41659 * 13 3 2 15 15 C 1.46900 * 110.99848 * 174.46136 * 13 3 2 16 16 H 1.09004 * 109.62542 * 61.61832 * 15 13 3 17 17 C 1.54234 * 109.63238 * 301.22972 * 15 13 3 18 18 C 1.45538 * 112.40789 * 160.29850 * 17 15 13 19 19 C 1.54241 * 112.40461 * 61.94377 * 18 17 15 20 20 C 1.50479 * 108.51825 * 280.01228 * 19 18 17 21 21 C 1.53000 * 108.87476 * 214.92588 * 20 19 18 22 22 C 1.52998 * 108.87899 * 333.46860 * 20 19 18 23 23 C 1.54070 * 112.49974 * 94.14897 * 20 19 18 24 24 C 1.50477 * 109.62800 * 182.19898 * 15 13 3 25 25 H 1.09000 * 109.46641 * 305.05380 * 1 2 3 26 26 H 1.08997 * 109.46778 * 65.05059 * 1 2 3 27 27 H 1.08991 * 109.47468 * 185.05484 * 1 2 3 28 28 H 1.09005 * 109.46795 * 239.99424 * 2 1 3 29 29 H 1.08998 * 109.46777 * 119.99946 * 2 1 3 30 30 H 0.96999 * 119.99784 * 179.97438 * 8 7 5 31 31 H 1.09007 * 109.47037 * 52.60243 * 14 13 3 32 32 H 1.09000 * 109.47100 * 172.60228 * 14 13 3 33 33 H 1.09001 * 109.47166 * 292.60633 * 14 13 3 34 34 H 1.09004 * 108.89501 * 281.06007 * 17 15 13 35 35 H 1.09000 * 108.89184 * 39.54742 * 17 15 13 36 36 H 1.09010 * 108.89508 * 182.69001 * 18 17 15 37 37 H 1.08996 * 108.90090 * 301.18877 * 18 17 15 38 38 H 1.08999 * 109.62841 * 39.71671 * 19 18 17 39 39 H 1.08996 * 109.62936 * 160.10784 * 19 18 17 40 40 H 1.09001 * 109.47147 * 60.00234 * 21 20 19 41 41 H 1.09001 * 109.47063 * 179.97438 * 21 20 19 42 42 H 1.09000 * 109.47506 * 299.99740 * 21 20 19 43 43 H 1.08998 * 109.46959 * 47.51905 * 22 20 19 44 44 H 1.08998 * 109.47301 * 167.51587 * 22 20 19 45 45 H 1.08999 * 109.47453 * 287.51891 * 22 20 19 46 46 H 1.09003 * 108.81366 * 79.13968 * 23 20 19 47 47 H 1.08991 * 108.81801 * 197.41667 * 23 20 19 48 48 H 1.08996 * 108.87697 * 334.64391 * 24 15 13 49 49 H 1.09007 * 108.87331 * 93.08589 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6349 1.9711 0.8628 5 6 3.5454 1.4430 0.0719 6 1 4.1236 1.8971 -0.7191 7 6 4.1843 0.8638 1.1478 8 7 3.4801 0.3104 2.1108 9 14 6.0502 0.8650 1.2373 10 1 6.5112 2.0894 1.9398 11 1 6.5109 -0.3353 1.9804 12 1 6.6117 0.8420 -0.1372 13 7 1.6086 2.1144 -1.2330 14 6 2.1678 1.4502 -2.4179 15 6 1.9672 3.5387 -1.2094 16 1 3.0504 3.6425 -1.1454 17 6 1.3087 4.2189 0.0082 18 6 1.9584 5.4722 0.3622 19 6 1.8746 6.5177 -0.7687 20 6 2.9335 6.2026 -1.7903 21 6 3.4706 7.5140 -2.3672 22 6 4.0799 5.4592 -1.1019 23 6 2.3994 5.3323 -2.9440 24 6 1.4645 4.2073 -2.4603 25 1 -0.3632 0.5903 0.8413 26 1 -0.3633 0.4335 -0.9318 27 1 -0.3634 -1.0236 0.0905 28 1 1.8933 -0.5140 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.9296 -0.0974 2.8675 31 1 1.9391 0.3851 -2.3793 32 1 1.7304 1.8833 -3.3175 33 1 3.2487 1.5893 -2.4362 34 1 0.2616 4.4165 -0.2214 35 1 1.3595 3.5418 0.8609 36 1 1.4805 5.8779 1.2540 37 1 3.0072 5.2758 0.5843 38 1 0.8907 6.4739 -1.2358 39 1 2.0416 7.5140 -0.3594 40 1 3.8993 8.1151 -1.5654 41 1 4.2394 7.2968 -3.1088 42 1 2.6561 8.0643 -2.8383 43 1 3.6741 4.6598 -0.4819 44 1 4.7418 5.0335 -1.8562 45 1 4.6407 6.1544 -0.4772 46 1 1.8528 5.9684 -3.6403 47 1 3.2444 4.8861 -3.4682 48 1 1.3753 3.4596 -3.2483 49 1 0.4785 4.6284 -2.2631 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697842372.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:23 Heat of formation + Delta-G solvation = 0.086701 kcal Electronic energy + Delta-G solvation = -23300.391055 eV Core-core repulsion = 20455.357324 eV Total energy + Delta-G solvation = -2845.033731 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.42404 -38.52871 -35.17032 -34.11263 -33.36648 -31.67433 -28.98538 -28.54682 -28.12482 -26.16218 -25.55925 -24.04392 -22.76823 -21.11057 -20.42545 -18.86359 -18.15284 -17.55075 -16.67281 -16.42963 -15.56217 -15.43252 -15.14400 -14.85675 -14.67694 -14.35763 -13.98665 -13.70533 -13.59232 -13.40277 -13.22060 -13.05202 -12.89517 -12.77214 -12.69239 -12.57560 -12.44226 -12.24335 -12.06355 -11.86085 -11.62039 -11.48855 -11.47532 -11.23631 -11.05281 -11.00327 -10.86550 -10.66613 -10.48717 -10.23020 -8.69155 -7.95567 -6.18305 1.34616 1.37776 1.44936 2.41332 3.20192 3.49296 3.79889 3.86729 4.04246 4.20590 4.33056 4.44519 4.48745 4.55599 4.56276 4.67924 4.73909 4.78948 4.85308 4.86864 4.90075 4.92671 4.94440 4.99945 5.05793 5.14059 5.15988 5.18957 5.25641 5.29755 5.31202 5.39515 5.42039 5.47561 5.48417 5.51018 5.59366 5.61231 5.63813 5.69915 5.71893 5.84454 5.89586 6.15959 6.32092 6.51157 6.85974 7.05653 7.51656 8.96510 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.017115 B = 0.007846 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.598183 B = 3567.741941 C = 4361.479003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.110 4.110 3 C 0.218 3.782 4 H 0.018 0.982 5 C -0.537 4.537 6 H 0.046 0.954 7 C 0.024 3.976 8 N -0.911 5.911 9 Si 0.934 3.066 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.536 5.536 14 C 0.037 3.963 15 C 0.076 3.924 16 H 0.056 0.944 17 C -0.103 4.103 18 C -0.132 4.132 19 C -0.096 4.096 20 C -0.059 4.059 21 C -0.136 4.136 22 C -0.175 4.175 23 C -0.098 4.098 24 C -0.111 4.111 25 H 0.031 0.969 26 H 0.056 0.944 27 H 0.042 0.958 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.259 0.741 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.005 0.995 34 H 0.055 0.945 35 H 0.037 0.963 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.066 0.934 43 H 0.080 0.920 44 H 0.038 0.962 45 H 0.051 0.949 46 H 0.075 0.925 47 H 0.048 0.952 48 H 0.065 0.935 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.109 11.347 -8.349 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.149 4.149 3 C 0.111 3.889 4 H 0.036 0.964 5 C -0.576 4.576 6 H 0.064 0.936 7 C -0.176 4.176 8 N -0.551 5.551 9 Si 0.761 3.239 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.259 5.259 14 C -0.112 4.112 15 C -0.031 4.031 16 H 0.073 0.927 17 C -0.141 4.141 18 C -0.170 4.170 19 C -0.133 4.133 20 C -0.059 4.059 21 C -0.193 4.193 22 C -0.231 4.231 23 C -0.136 4.136 24 C -0.149 4.149 25 H 0.051 0.949 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.023 0.977 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.074 0.926 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.071 0.929 46 H 0.094 0.906 47 H 0.067 0.933 48 H 0.083 0.917 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.608 11.219 -8.212 14.364 hybrid contribution 2.149 -0.531 0.646 2.306 sum -1.459 10.688 -7.566 13.176 Atomic orbital electron populations 1.21536 0.96415 0.99360 1.00707 1.21511 0.94370 0.98827 1.00188 1.19099 0.91188 0.90880 0.87744 0.96438 1.21933 0.94169 1.36155 1.05341 0.93594 1.25505 1.01034 0.95347 0.95702 1.69994 1.35978 1.38856 1.10271 0.85934 0.82651 0.77449 0.77898 1.20452 1.21109 1.19920 1.62405 1.58315 1.02210 1.03000 1.22221 0.96342 0.99021 0.93569 1.21637 0.98900 0.87637 0.94973 0.92663 1.20427 0.99314 0.96422 0.97906 1.20732 1.01920 0.95457 0.98846 1.21338 0.98964 0.97981 0.95001 1.20214 0.95111 0.95425 0.95112 1.21943 1.00963 0.95637 1.00739 1.22829 0.98270 1.01218 1.00784 1.21957 0.98599 0.96153 0.96917 1.21475 0.99170 0.97304 0.96920 0.94943 0.92535 0.93941 0.95100 0.92197 0.93188 0.92699 0.90951 0.97654 0.92630 0.94420 0.92563 0.91537 0.91311 0.90853 0.92481 0.92978 0.91549 0.90168 0.94287 0.92949 0.90631 0.93281 0.91694 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.96 9.72 71.98 0.70 -4.26 16 2 C -0.11 -5.29 5.02 30.59 0.15 -5.13 16 3 C 0.22 10.67 1.54 44.17 0.07 10.73 16 4 H 0.02 0.98 5.66 -2.39 -0.01 0.97 16 5 C -0.54 -28.56 7.15 25.60 0.18 -28.37 16 6 H 0.05 2.48 5.84 -2.91 -0.02 2.46 16 7 C 0.02 1.29 5.30 84.66 0.45 1.73 16 8 N -0.91 -51.98 11.30 21.45 0.24 -51.73 16 9 Si 0.93 43.77 29.54 68.60 2.03 45.79 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 13 N -0.54 -22.06 4.07 -878.52 -3.57 -25.63 16 14 C 0.04 1.42 8.52 127.69 1.09 2.51 16 15 C 0.08 2.79 1.29 44.52 0.06 2.85 16 16 H 0.06 2.27 3.01 -2.38 -0.01 2.26 16 17 C -0.10 -3.71 4.71 28.73 0.14 -3.58 16 18 C -0.13 -4.06 5.14 28.74 0.15 -3.91 16 19 C -0.10 -2.32 5.01 30.20 0.15 -2.17 16 20 C -0.06 -1.44 0.72 -52.64 -0.04 -1.48 16 21 C -0.14 -2.66 7.98 71.98 0.57 -2.08 16 22 C -0.17 -5.26 6.33 71.98 0.46 -4.81 16 23 C -0.10 -2.45 4.83 31.32 0.15 -2.30 16 24 C -0.11 -3.27 4.87 30.14 0.15 -3.12 16 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 2.15 7.84 -2.39 -0.02 2.13 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.03 1.45 6.14 -2.38 -0.01 1.44 16 29 H 0.06 3.25 6.00 -2.39 -0.01 3.24 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.05 2.16 5.93 -2.38 -0.01 2.14 16 32 H 0.07 2.34 5.95 -2.39 -0.01 2.33 16 33 H 0.00 0.21 6.64 -2.39 -0.02 0.19 16 34 H 0.06 1.87 7.47 -2.39 -0.02 1.85 16 35 H 0.04 1.64 5.45 -2.39 -0.01 1.63 16 36 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 37 H 0.07 2.27 4.83 -2.39 -0.01 2.26 16 38 H 0.07 1.60 6.98 -2.39 -0.02 1.58 16 39 H 0.07 1.55 7.68 -2.39 -0.02 1.53 16 40 H 0.06 1.07 8.06 -2.39 -0.02 1.05 16 41 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 42 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 2.93 2.67 -2.39 -0.01 2.92 16 44 H 0.04 1.19 7.76 -2.39 -0.02 1.17 16 45 H 0.05 1.46 8.03 -2.39 -0.02 1.44 16 46 H 0.08 1.56 7.98 -2.39 -0.02 1.54 16 47 H 0.05 1.28 7.72 -2.39 -0.02 1.26 16 48 H 0.06 1.91 5.35 -2.39 -0.01 1.90 16 49 H 0.06 1.74 6.63 -2.38 -0.02 1.72 16 Total: -1.00 -56.70 333.00 4.04 -52.67 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.92 Total: 22.30 kcal Atomic # 6 Polarization: -47.82 SS G_CDS: 4.42 Total: -43.39 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -3.33 Total: -77.37 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.79 kcal Total: -56.70 4.04 -52.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697842372.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.752 kcal (2) G-P(sol) polarization free energy of solvation -56.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds