Wall clock time and date at job start Mon Mar 30 2020 07:43:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 H 1.09004 * 109.47267 * 303.03005 * 3 2 1 5 5 C 1.50695 * 109.47303 * 183.02631 * 3 2 1 6 6 H 1.08007 * 119.99560 * 244.93690 * 5 3 2 7 7 C 1.37874 * 120.00255 * 64.93142 * 5 3 2 8 8 N 1.31520 * 120.00189 * 196.56312 * 7 5 3 9 9 Si 1.86800 * 119.99749 * 16.56994 * 7 5 3 10 10 H 1.48493 * 109.47109 * 94.60170 * 9 7 5 11 11 H 1.48507 * 109.47012 * 214.60142 * 9 7 5 12 12 H 1.48500 * 109.46815 * 334.59858 * 9 7 5 13 13 N 1.46904 * 109.46795 * 63.02287 * 3 2 1 14 14 C 1.46901 * 111.00035 * 37.47490 * 13 3 2 15 15 C 1.46895 * 111.00163 * 273.51519 * 13 3 2 16 16 H 1.09009 * 108.87015 * 52.66544 * 15 13 3 17 17 C 1.54235 * 108.82409 * 294.10183 * 15 13 3 18 18 C 1.50474 * 108.52776 * 159.31656 * 17 15 13 19 19 C 1.54069 * 112.50266 * 94.14816 * 18 17 15 20 20 C 1.54064 * 112.81164 * 318.28647 * 19 18 17 21 21 C 1.53004 * 108.87323 * 197.50313 * 20 19 18 22 22 C 1.52997 * 108.79970 * 79.01011 * 20 19 18 23 23 C 1.50474 * 112.49993 * 318.28072 * 20 19 18 24 24 C 1.45548 * 108.89632 * 171.26142 * 15 13 3 25 25 H 1.09000 * 109.46874 * 166.27101 * 1 2 3 26 26 H 1.08997 * 109.46883 * 286.26710 * 1 2 3 27 27 H 1.08996 * 109.47720 * 46.26736 * 1 2 3 28 28 H 1.09004 * 109.46962 * 240.00696 * 2 1 3 29 29 H 1.08993 * 109.47327 * 120.00080 * 2 1 3 30 30 H 0.96999 * 119.99800 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47038 * 296.04577 * 14 13 3 32 32 H 1.09005 * 109.46491 * 56.04676 * 14 13 3 33 33 H 1.09001 * 109.47116 * 176.04076 * 14 13 3 34 34 H 1.09000 * 109.62726 * 279.02426 * 17 15 13 35 35 H 1.08996 * 109.62775 * 39.60397 * 17 15 13 36 36 H 1.09011 * 108.87574 * 333.37288 * 18 17 15 37 37 H 1.08998 * 108.87932 * 214.93280 * 18 17 15 38 38 H 1.08998 * 108.81450 * 197.42557 * 19 18 17 39 39 H 1.08999 * 108.72434 * 79.08673 * 19 18 17 40 40 H 1.09001 * 109.47206 * 182.97731 * 21 20 19 41 41 H 1.08998 * 109.47198 * 302.97845 * 21 20 19 42 42 H 1.09002 * 109.46902 * 62.97809 * 21 20 19 43 43 H 1.09000 * 109.47244 * 284.88383 * 22 20 19 44 44 H 1.08997 * 109.47341 * 44.88190 * 22 20 19 45 45 H 1.09000 * 109.47721 * 164.88679 * 22 20 19 46 46 H 1.08996 * 109.62742 * 334.44677 * 23 20 19 47 47 H 1.09003 * 109.62606 * 213.86702 * 23 20 19 48 48 H 1.08998 * 108.89265 * 303.35443 * 24 15 13 49 49 H 1.09001 * 108.89208 * 61.93710 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6330 1.9718 -0.8616 5 6 3.5451 1.4432 -0.0750 6 1 4.1267 1.8248 0.7512 7 6 4.1796 0.9568 -1.1982 8 7 5.4580 0.6513 -1.1510 9 14 3.2236 0.7318 -2.7872 10 1 3.3887 1.9368 -3.6390 11 1 3.7378 -0.4594 -3.5098 12 1 1.7845 0.5389 -2.4759 13 7 1.6108 2.1135 1.2343 14 6 1.6609 1.1935 2.3785 15 6 0.2685 2.6901 1.0807 16 1 -0.4090 1.9153 0.7217 17 6 0.3301 3.8231 0.0361 18 6 -1.0583 4.0619 -0.4928 19 6 -1.7918 5.1864 0.2629 20 6 -1.5686 5.1268 1.7861 21 6 -2.6441 5.9675 2.4772 22 6 -0.1954 5.7203 2.1068 23 6 -1.6293 3.7222 2.3225 24 6 -0.1953 3.1570 2.3789 25 1 -0.3633 -0.9983 -0.2439 26 1 -0.3633 0.2879 0.9865 27 1 -0.3634 0.7104 -0.7425 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.9044 0.3094 -1.9414 31 1 0.9482 0.3833 2.2247 32 1 2.6658 0.7811 2.4692 33 1 1.4061 1.7335 3.2904 34 1 0.7049 4.7331 0.5047 35 1 0.9884 3.5314 -0.7821 36 1 -1.6341 3.1409 -0.4002 37 1 -0.9927 4.3300 -1.5472 38 1 -2.8599 5.1071 0.0608 39 1 -1.4349 6.1475 -0.1074 40 1 -2.4641 5.9753 3.5522 41 1 -2.6087 6.9879 2.0955 42 1 -3.6256 5.5382 2.2763 43 1 0.5819 5.0078 1.8307 44 1 -0.0582 6.6437 1.5441 45 1 -0.1313 5.9323 3.1740 46 1 -2.2405 3.1050 1.6641 47 1 -2.0591 3.7311 3.3241 48 1 -0.1713 2.3249 3.0825 49 1 0.4769 3.9383 2.7338 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697842378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:26 Heat of formation + Delta-G solvation = 29.634478 kcal Electronic energy + Delta-G solvation = -23211.387491 eV Core-core repulsion = 20367.635047 eV Total energy + Delta-G solvation = -2843.752443 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.50575 -37.60121 -33.56109 -32.63756 -31.86584 -30.34308 -28.08271 -27.64309 -27.20292 -24.77428 -24.10859 -22.49496 -21.55698 -19.68867 -18.93258 -17.92427 -16.89936 -15.76713 -15.66308 -15.09732 -14.42221 -14.30644 -13.97869 -13.66306 -13.06589 -12.99727 -12.82609 -12.61415 -12.50689 -12.03263 -11.92840 -11.75907 -11.72222 -11.53580 -11.41211 -11.16197 -11.00988 -10.93614 -10.72170 -10.52222 -10.44012 -10.15702 -10.10127 -9.95127 -9.84317 -9.53531 -9.40688 -9.20899 -9.13184 -8.28921 -7.05419 -6.03414 -3.93664 3.30250 3.39872 3.42551 4.47139 4.64260 4.80243 4.86833 4.99760 5.24243 5.25389 5.33523 5.44527 5.52410 5.53852 5.68244 5.70742 5.78386 5.80233 5.88551 5.88829 5.93062 5.96462 6.04005 6.07280 6.11854 6.15984 6.21265 6.25168 6.26624 6.38475 6.45022 6.48037 6.49141 6.56254 6.58726 6.63962 6.66043 6.74816 6.79608 6.96758 7.00145 7.06768 7.29801 7.79094 8.09516 8.25214 8.77216 9.12999 9.64464 11.10114 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025958 B = 0.006116 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.394724 B = 4576.888789 C = 4764.749092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.154 4.154 3 C 0.188 3.812 4 H 0.037 0.963 5 C -0.498 4.498 6 H 0.078 0.922 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.856 3.144 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.256 1.256 13 N -0.520 5.520 14 C 0.024 3.976 15 C 0.069 3.931 16 H 0.046 0.954 17 C -0.132 4.132 18 C -0.116 4.116 19 C -0.103 4.103 20 C -0.060 4.060 21 C -0.141 4.141 22 C -0.177 4.177 23 C -0.103 4.103 24 C -0.138 4.138 25 H 0.036 0.964 26 H 0.053 0.947 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.261 0.739 31 H 0.021 0.979 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.052 0.948 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.050 0.950 42 H 0.049 0.951 43 H 0.107 0.893 44 H 0.046 0.954 45 H 0.047 0.953 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.769 6.741 5.406 17.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.194 4.194 3 C 0.080 3.920 4 H 0.054 0.946 5 C -0.536 4.536 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.533 5.533 9 Si 0.683 3.317 10 H -0.207 1.207 11 H -0.216 1.216 12 H -0.180 1.180 13 N -0.243 5.243 14 C -0.124 4.124 15 C -0.039 4.039 16 H 0.064 0.936 17 C -0.169 4.169 18 C -0.154 4.154 19 C -0.141 4.141 20 C -0.060 4.060 21 C -0.198 4.198 22 C -0.232 4.232 23 C -0.141 4.141 24 C -0.175 4.175 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.071 0.929 31 H 0.039 0.961 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.125 0.875 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.077 0.923 49 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.277 7.056 5.395 17.671 hybrid contribution -1.000 -0.903 -1.222 1.819 sum -16.277 6.153 4.172 17.894 Atomic orbital electron populations 1.22175 0.98741 0.99892 1.00601 1.22608 0.92691 1.02281 1.01779 1.19778 0.96391 0.87756 0.88072 0.94577 1.20922 0.88796 1.40321 1.03534 0.90347 1.24859 0.94654 0.94731 0.98541 1.69984 1.10594 1.43558 1.29165 0.87279 0.81759 0.77716 0.84943 1.20747 1.21550 1.18006 1.62296 1.22075 1.34774 1.05136 1.22448 1.01623 0.94740 0.93578 1.20810 0.91506 0.96445 0.95108 0.93604 1.21833 0.95943 0.99837 0.99329 1.21309 0.96883 0.98338 0.98853 1.22000 0.99408 0.98826 0.93825 1.20208 0.95508 0.95518 0.94757 1.22004 0.98297 0.99535 1.00007 1.22870 0.98237 1.01454 1.00683 1.21345 0.97263 0.95346 1.00131 1.21028 0.96386 1.01804 0.98301 0.94445 0.92863 0.93377 0.92695 0.92018 0.92879 0.96108 0.91132 0.93057 0.89501 0.90850 0.92667 0.92746 0.92913 0.92499 0.92887 0.93127 0.93146 0.87526 0.93481 0.93351 0.92211 0.92330 0.92299 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 8.03 37.16 0.30 -2.50 16 2 C -0.15 -3.31 4.22 -26.73 -0.11 -3.42 16 3 C 0.19 4.30 1.22 -68.87 -0.08 4.21 16 4 H 0.04 0.86 4.25 -51.93 -0.22 0.64 16 5 C -0.50 -13.75 8.85 -34.44 -0.30 -14.06 16 6 H 0.08 2.40 8.06 -52.48 -0.42 1.98 16 7 C 0.07 2.10 5.33 -17.82 -0.09 2.00 16 8 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 9 Si 0.86 21.14 25.81 -169.99 -4.39 16.76 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.26 -5.96 5.56 56.52 0.31 -5.64 16 13 N -0.52 -10.32 4.43 -231.77 -1.03 -11.35 16 14 C 0.02 0.45 7.30 60.07 0.44 0.88 16 15 C 0.07 1.14 1.17 -70.58 -0.08 1.05 16 16 H 0.05 0.77 3.30 -51.92 -0.17 0.60 16 17 C -0.13 -2.13 4.97 -27.35 -0.14 -2.27 16 18 C -0.12 -1.56 5.31 -27.43 -0.15 -1.71 16 19 C -0.10 -1.19 4.83 -25.62 -0.12 -1.31 16 20 C -0.06 -0.67 0.72 -155.21 -0.11 -0.78 16 21 C -0.14 -1.36 7.98 37.16 0.30 -1.06 16 22 C -0.18 -2.11 6.32 37.16 0.23 -1.87 16 23 C -0.10 -1.21 5.02 -27.35 -0.14 -1.35 16 24 C -0.14 -1.93 3.88 -29.60 -0.11 -2.04 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.05 0.88 4.88 -51.93 -0.25 0.63 16 27 H 0.05 0.86 7.47 -51.93 -0.39 0.47 16 28 H 0.05 1.26 5.13 -51.93 -0.27 0.99 16 29 H 0.06 1.33 6.24 -51.93 -0.32 1.00 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.02 0.36 4.85 -51.93 -0.25 0.11 16 32 H 0.07 1.44 7.72 -51.93 -0.40 1.04 16 33 H 0.05 0.82 6.13 -51.93 -0.32 0.50 16 34 H 0.09 1.36 4.25 -51.93 -0.22 1.13 16 35 H 0.07 1.39 5.88 -51.93 -0.31 1.08 16 36 H 0.05 0.75 6.63 -51.92 -0.34 0.41 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.56 7.98 -51.93 -0.41 0.14 16 39 H 0.06 0.64 7.72 -51.93 -0.40 0.24 16 40 H 0.05 0.49 8.06 -51.93 -0.42 0.07 16 41 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.11 1.48 2.67 -51.93 -0.14 1.34 16 44 H 0.05 0.54 7.76 -51.93 -0.40 0.14 16 45 H 0.05 0.54 8.04 -51.93 -0.42 0.12 16 46 H 0.06 0.73 6.98 -51.93 -0.36 0.36 16 47 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 48 H 0.06 0.82 5.85 -51.93 -0.30 0.52 16 49 H 0.09 1.27 4.83 -51.93 -0.25 1.02 16 LS Contribution 322.35 15.07 4.86 4.86 Total: -1.00 -28.61 322.35 -8.27 -36.88 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: -8.31 Total: 3.51 kcal Atomic # 6 Polarization: -24.05 SS G_CDS: -0.18 Total: -24.23 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: -0.25 Total: -37.78 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.39 Total: 16.76 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -28.61 -8.27 -36.88 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697842378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.518 kcal (2) G-P(sol) polarization free energy of solvation -28.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds