Wall clock time and date at job start Mon Mar 30 2020 07:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 H 1.09004 * 109.47267 * 303.03005 * 3 2 1 5 5 C 1.50695 * 109.47303 * 183.02631 * 3 2 1 6 6 H 1.08007 * 119.99560 * 244.93690 * 5 3 2 7 7 C 1.37874 * 120.00255 * 64.93142 * 5 3 2 8 8 N 1.31520 * 120.00189 * 196.56312 * 7 5 3 9 9 Si 1.86800 * 119.99749 * 16.56994 * 7 5 3 10 10 H 1.48493 * 109.47109 * 94.60170 * 9 7 5 11 11 H 1.48507 * 109.47012 * 214.60142 * 9 7 5 12 12 H 1.48500 * 109.46815 * 334.59858 * 9 7 5 13 13 N 1.46904 * 109.46795 * 63.02287 * 3 2 1 14 14 C 1.46901 * 111.00035 * 37.47490 * 13 3 2 15 15 C 1.46895 * 111.00163 * 273.51519 * 13 3 2 16 16 H 1.09009 * 108.87015 * 52.66544 * 15 13 3 17 17 C 1.54235 * 108.82409 * 294.10183 * 15 13 3 18 18 C 1.50474 * 108.52776 * 159.31656 * 17 15 13 19 19 C 1.54069 * 112.50266 * 94.14816 * 18 17 15 20 20 C 1.54064 * 112.81164 * 318.28647 * 19 18 17 21 21 C 1.53004 * 108.87323 * 197.50313 * 20 19 18 22 22 C 1.52997 * 108.79970 * 79.01011 * 20 19 18 23 23 C 1.50474 * 112.49993 * 318.28072 * 20 19 18 24 24 C 1.45548 * 108.89632 * 171.26142 * 15 13 3 25 25 H 1.09000 * 109.46874 * 166.27101 * 1 2 3 26 26 H 1.08997 * 109.46883 * 286.26710 * 1 2 3 27 27 H 1.08996 * 109.47720 * 46.26736 * 1 2 3 28 28 H 1.09004 * 109.46962 * 240.00696 * 2 1 3 29 29 H 1.08993 * 109.47327 * 120.00080 * 2 1 3 30 30 H 0.96999 * 119.99800 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.47038 * 296.04577 * 14 13 3 32 32 H 1.09005 * 109.46491 * 56.04676 * 14 13 3 33 33 H 1.09001 * 109.47116 * 176.04076 * 14 13 3 34 34 H 1.09000 * 109.62726 * 279.02426 * 17 15 13 35 35 H 1.08996 * 109.62775 * 39.60397 * 17 15 13 36 36 H 1.09011 * 108.87574 * 333.37288 * 18 17 15 37 37 H 1.08998 * 108.87932 * 214.93280 * 18 17 15 38 38 H 1.08998 * 108.81450 * 197.42557 * 19 18 17 39 39 H 1.08999 * 108.72434 * 79.08673 * 19 18 17 40 40 H 1.09001 * 109.47206 * 182.97731 * 21 20 19 41 41 H 1.08998 * 109.47198 * 302.97845 * 21 20 19 42 42 H 1.09002 * 109.46902 * 62.97809 * 21 20 19 43 43 H 1.09000 * 109.47244 * 284.88383 * 22 20 19 44 44 H 1.08997 * 109.47341 * 44.88190 * 22 20 19 45 45 H 1.09000 * 109.47721 * 164.88679 * 22 20 19 46 46 H 1.08996 * 109.62742 * 334.44677 * 23 20 19 47 47 H 1.09003 * 109.62606 * 213.86702 * 23 20 19 48 48 H 1.08998 * 108.89265 * 303.35443 * 24 15 13 49 49 H 1.09001 * 108.89208 * 61.93710 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6330 1.9718 -0.8616 5 6 3.5451 1.4432 -0.0750 6 1 4.1267 1.8248 0.7512 7 6 4.1796 0.9568 -1.1982 8 7 5.4580 0.6513 -1.1510 9 14 3.2236 0.7318 -2.7872 10 1 3.3887 1.9368 -3.6390 11 1 3.7378 -0.4594 -3.5098 12 1 1.7845 0.5389 -2.4759 13 7 1.6108 2.1135 1.2343 14 6 1.6609 1.1935 2.3785 15 6 0.2685 2.6901 1.0807 16 1 -0.4090 1.9153 0.7217 17 6 0.3301 3.8231 0.0361 18 6 -1.0583 4.0619 -0.4928 19 6 -1.7918 5.1864 0.2629 20 6 -1.5686 5.1268 1.7861 21 6 -2.6441 5.9675 2.4772 22 6 -0.1954 5.7203 2.1068 23 6 -1.6293 3.7222 2.3225 24 6 -0.1953 3.1570 2.3789 25 1 -0.3633 -0.9983 -0.2439 26 1 -0.3633 0.2879 0.9865 27 1 -0.3634 0.7104 -0.7425 28 1 1.8933 -0.5137 -0.8901 29 1 1.8934 -0.5138 0.8899 30 1 5.9044 0.3094 -1.9414 31 1 0.9482 0.3833 2.2247 32 1 2.6658 0.7811 2.4692 33 1 1.4061 1.7335 3.2904 34 1 0.7049 4.7331 0.5047 35 1 0.9884 3.5314 -0.7821 36 1 -1.6341 3.1409 -0.4002 37 1 -0.9927 4.3300 -1.5472 38 1 -2.8599 5.1071 0.0608 39 1 -1.4349 6.1475 -0.1074 40 1 -2.4641 5.9753 3.5522 41 1 -2.6087 6.9879 2.0955 42 1 -3.6256 5.5382 2.2763 43 1 0.5819 5.0078 1.8307 44 1 -0.0582 6.6437 1.5441 45 1 -0.1313 5.9323 3.1740 46 1 -2.2405 3.1050 1.6641 47 1 -2.0591 3.7311 3.3241 48 1 -0.1713 2.3249 3.0825 49 1 0.4769 3.9383 2.7338 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697842378.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:25 Heat of formation + Delta-G solvation = 12.714955 kcal Electronic energy + Delta-G solvation = -23212.121176 eV Core-core repulsion = 20367.635047 eV Total energy + Delta-G solvation = -2844.486129 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.69219 -38.99299 -35.14243 -33.97706 -33.54498 -31.72077 -29.69151 -28.88001 -28.17860 -26.10919 -25.48280 -24.10946 -22.70640 -21.21100 -20.41090 -18.98417 -18.74413 -17.31117 -16.95649 -16.51184 -15.87216 -15.66963 -15.26361 -14.95820 -14.73440 -14.33012 -14.04587 -13.77469 -13.68118 -13.55221 -13.22602 -13.19794 -12.97145 -12.76775 -12.72006 -12.66514 -12.44457 -12.30029 -12.19751 -11.86669 -11.66094 -11.57161 -11.50147 -11.24881 -11.09379 -11.07222 -10.89214 -10.79596 -10.46844 -10.34623 -8.61900 -8.26030 -6.19853 1.31464 1.36021 1.44652 2.36723 3.07914 3.31418 3.83392 3.89894 4.01533 4.15766 4.24147 4.27405 4.33582 4.43073 4.45135 4.52157 4.53159 4.60967 4.71828 4.75936 4.81929 4.87907 4.89739 4.93117 4.98892 5.03921 5.06229 5.08347 5.13880 5.16472 5.22377 5.24678 5.28758 5.32381 5.37604 5.40017 5.45647 5.52386 5.55629 5.61748 5.62266 5.70331 5.77473 5.83704 6.19876 6.64948 6.84871 6.87714 7.42453 8.91609 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.025958 B = 0.006116 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.394724 B = 4576.888789 C = 4764.749092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.154 4.154 3 C 0.194 3.806 4 H 0.034 0.966 5 C -0.498 4.498 6 H 0.030 0.970 7 C 0.017 3.983 8 N -0.946 5.946 9 Si 0.921 3.079 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.231 1.231 13 N -0.539 5.539 14 C 0.030 3.970 15 C 0.076 3.924 16 H 0.049 0.951 17 C -0.132 4.132 18 C -0.112 4.112 19 C -0.100 4.100 20 C -0.059 4.059 21 C -0.137 4.137 22 C -0.174 4.174 23 C -0.096 4.096 24 C -0.137 4.137 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.262 0.738 31 H 0.034 0.966 32 H 0.037 0.963 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.058 0.942 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.054 0.946 46 H 0.062 0.938 47 H 0.074 0.926 48 H 0.061 0.939 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.567 7.244 5.521 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.193 4.193 3 C 0.086 3.914 4 H 0.052 0.948 5 C -0.537 4.537 6 H 0.049 0.951 7 C -0.180 4.180 8 N -0.586 5.586 9 Si 0.745 3.255 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.154 1.154 13 N -0.262 5.262 14 C -0.118 4.118 15 C -0.031 4.031 16 H 0.067 0.933 17 C -0.169 4.169 18 C -0.150 4.150 19 C -0.137 4.137 20 C -0.059 4.059 21 C -0.194 4.194 22 C -0.230 4.230 23 C -0.134 4.134 24 C -0.174 4.174 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.052 0.948 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.067 0.933 45 H 0.073 0.927 46 H 0.081 0.919 47 H 0.093 0.907 48 H 0.079 0.921 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.105 7.570 5.526 21.280 hybrid contribution 0.277 -1.005 -1.148 1.550 sum -18.828 6.565 4.378 20.415 Atomic orbital electron populations 1.22059 0.95311 1.01381 1.01633 1.22480 0.95707 1.00462 1.00670 1.19526 0.93096 0.89178 0.89589 0.94816 1.21199 0.91531 1.39030 1.01916 0.95129 1.25656 0.95512 0.94726 1.02067 1.70130 1.12697 1.45617 1.30190 0.86235 0.81607 0.77492 0.80164 1.20535 1.21469 1.15405 1.62160 1.24973 1.34894 1.04197 1.22393 1.00059 0.95201 0.94155 1.20879 0.89303 0.96282 0.96669 0.93299 1.21825 0.97158 0.99823 0.98127 1.21259 0.95228 0.99372 0.99163 1.21978 1.00005 0.97942 0.93778 1.20209 0.95500 0.95499 0.94707 1.21954 0.97968 0.99431 1.00093 1.22803 0.98169 1.00937 1.01111 1.21310 0.95404 0.95410 1.01238 1.20993 0.97958 1.01812 0.96619 0.92351 0.91449 0.93097 0.94328 0.92762 0.92867 0.94814 0.94410 0.90530 0.89357 0.94256 0.92402 0.92619 0.91288 0.92297 0.92399 0.92724 0.92175 0.89769 0.93332 0.92713 0.91947 0.90720 0.92091 0.89841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.80 8.03 71.98 0.58 -4.22 16 2 C -0.15 -6.46 4.22 30.59 0.13 -6.33 16 3 C 0.19 8.97 1.22 44.17 0.05 9.03 16 4 H 0.03 1.60 4.25 -2.39 -0.01 1.59 16 5 C -0.50 -28.77 8.85 25.60 0.23 -28.55 16 6 H 0.03 2.00 8.06 -2.91 -0.02 1.98 16 7 C 0.02 1.02 5.33 84.65 0.45 1.47 16 8 N -0.95 -59.98 13.96 21.45 0.30 -59.68 16 9 Si 0.92 44.40 25.81 68.60 1.77 46.17 16 10 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 11 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 12 H -0.23 -10.12 5.56 99.48 0.55 -9.57 16 13 N -0.54 -21.44 4.43 -887.19 -3.93 -25.37 16 14 C 0.03 1.09 7.30 127.69 0.93 2.02 16 15 C 0.08 2.38 1.17 43.06 0.05 2.43 16 16 H 0.05 1.52 3.30 -2.38 -0.01 1.51 16 17 C -0.13 -4.13 4.97 30.20 0.15 -3.98 16 18 C -0.11 -2.77 5.31 30.14 0.16 -2.61 16 19 C -0.10 -1.98 4.83 31.32 0.15 -1.82 16 20 C -0.06 -1.13 0.72 -52.64 -0.04 -1.17 16 21 C -0.14 -2.12 7.98 71.98 0.57 -1.54 16 22 C -0.17 -3.81 6.32 71.98 0.45 -3.36 16 23 C -0.10 -1.92 5.02 30.20 0.15 -1.77 16 24 C -0.14 -3.50 3.88 28.74 0.11 -3.39 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.07 2.01 4.88 -2.39 -0.01 2.00 16 27 H 0.05 1.64 7.47 -2.39 -0.02 1.62 16 28 H 0.04 1.72 5.13 -2.38 -0.01 1.71 16 29 H 0.05 2.33 6.24 -2.39 -0.01 2.31 16 30 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 31 H 0.03 1.13 4.85 -2.39 -0.01 1.12 16 32 H 0.04 1.59 7.72 -2.38 -0.02 1.57 16 33 H 0.08 2.36 6.13 -2.39 -0.01 2.35 16 34 H 0.09 2.72 4.25 -2.39 -0.01 2.71 16 35 H 0.04 1.49 5.88 -2.39 -0.01 1.47 16 36 H 0.06 1.39 6.63 -2.38 -0.02 1.38 16 37 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.07 1.18 7.98 -2.39 -0.02 1.16 16 39 H 0.06 1.16 7.72 -2.39 -0.02 1.14 16 40 H 0.06 0.85 8.06 -2.39 -0.02 0.83 16 41 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 2.25 2.67 -2.39 -0.01 2.25 16 44 H 0.05 1.03 7.76 -2.39 -0.02 1.01 16 45 H 0.05 1.11 8.04 -2.39 -0.02 1.09 16 46 H 0.06 1.25 6.98 -2.39 -0.02 1.24 16 47 H 0.07 1.30 7.67 -2.39 -0.02 1.28 16 48 H 0.06 1.53 5.85 -2.39 -0.01 1.52 16 49 H 0.08 2.26 4.83 -2.39 -0.01 2.25 16 Total: -1.00 -64.47 322.35 3.05 -61.42 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: 0.77 Total: 21.26 kcal Atomic # 6 Polarization: -47.94 SS G_CDS: 4.14 Total: -43.80 kcal Atomic # 7 Polarization: -81.43 SS G_CDS: -3.63 Total: -85.06 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 1.77 Total: 46.17 kcal Total: -64.47 3.05 -61.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697842378.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.133 kcal (2) G-P(sol) polarization free energy of solvation -64.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds