Wall clock time and date at job start Mon Mar 30 2020 07:57:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.78515 * 2 1 4 4 C 1.54235 * 109.63035 * 239.51135 * 2 1 3 5 5 C 1.45542 * 112.32952 * 160.35157 * 4 2 1 6 6 C 1.54058 * 112.51040 * 61.98309 * 5 4 2 7 7 C 1.50479 * 108.47686 * 279.95501 * 6 5 4 8 8 H 1.09002 * 108.87504 * 333.34841 * 7 6 5 9 9 N 1.46902 * 108.79523 * 214.85180 * 7 6 5 10 10 C 1.46892 * 111.00082 * 303.11548 * 9 7 6 11 11 C 1.46903 * 110.99804 * 67.07138 * 9 7 6 12 12 C 1.53005 * 109.46685 * 169.99518 * 11 9 7 13 13 C 1.52998 * 109.46892 * 179.97438 * 12 11 9 14 14 C 1.52999 * 109.47334 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47352 * 180.02562 * 14 13 12 16 16 H 1.08004 * 119.99961 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00303 * 180.02562 * 15 14 13 18 18 N 1.31521 * 119.99633 * 359.97438 * 17 15 14 19 19 Si 1.86795 * 120.00447 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46894 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47031 * 119.99821 * 19 17 15 22 22 H 1.48496 * 109.47472 * 240.00251 * 19 17 15 23 23 C 1.54070 * 112.49905 * 94.12605 * 7 6 5 24 24 C 1.50481 * 109.62614 * 120.47956 * 2 1 3 25 25 H 1.08995 * 109.47613 * 180.48309 * 1 2 3 26 26 H 1.09004 * 109.47704 * 300.48898 * 1 2 3 27 27 H 1.09006 * 109.46683 * 60.48531 * 1 2 3 28 28 H 1.09002 * 108.89589 * 281.05754 * 4 2 1 29 29 H 1.09003 * 108.89630 * 39.64693 * 4 2 1 30 30 H 1.08996 * 108.89625 * 182.64364 * 5 4 2 31 31 H 1.09002 * 108.89637 * 301.13360 * 5 4 2 32 32 H 1.08994 * 109.67673 * 160.24462 * 6 5 4 33 33 H 1.09005 * 109.79615 * 39.72811 * 6 5 4 34 34 H 1.09002 * 109.47255 * 60.00170 * 10 9 7 35 35 H 1.09001 * 109.47274 * 180.02562 * 10 9 7 36 36 H 1.09007 * 109.47083 * 299.99791 * 10 9 7 37 37 H 1.08995 * 109.47279 * 289.99360 * 11 9 7 38 38 H 1.09000 * 109.47367 * 49.99855 * 11 9 7 39 39 H 1.08995 * 109.47133 * 299.99932 * 12 11 9 40 40 H 1.09000 * 109.46943 * 60.00078 * 12 11 9 41 41 H 1.09000 * 109.47346 * 300.00520 * 13 12 11 42 42 H 1.09005 * 109.46996 * 59.99925 * 13 12 11 43 43 H 1.08995 * 109.46739 * 300.00230 * 14 13 12 44 44 H 1.09000 * 109.46895 * 60.00105 * 14 13 12 45 45 H 0.96994 * 119.99789 * 179.97438 * 18 17 15 46 46 H 1.09006 * 108.80889 * 197.42412 * 23 7 6 47 47 H 1.09000 * 108.72350 * 79.08891 * 23 7 6 48 48 H 1.09001 * 108.87575 * 334.64040 * 24 2 1 49 49 H 1.08999 * 108.87377 * 93.08163 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0481 -0.7371 -1.2518 5 6 3.4281 -0.3951 -1.5633 6 6 4.4028 -0.7943 -0.4390 7 6 4.3394 0.2518 0.6408 8 1 4.0349 1.1994 0.1964 9 7 5.6778 0.4101 1.2255 10 6 6.1811 -0.8693 1.7426 11 6 6.6128 0.9888 0.2513 12 6 7.9153 1.3690 0.9584 13 6 8.8893 1.9710 -0.0563 14 6 10.1921 2.3507 0.6505 15 6 11.1513 2.9443 -0.3488 16 1 10.8609 3.0407 -1.3846 17 6 12.3999 3.3633 0.0589 18 7 12.7537 3.2455 1.3202 19 14 13.5892 4.0984 -1.1799 20 1 12.9546 4.1205 -2.5223 21 1 13.9338 5.4843 -0.7730 22 1 14.8242 3.2753 -1.2292 23 6 3.3466 -0.1157 1.7602 24 6 2.0354 -0.7189 1.2215 25 1 -0.3634 -1.0276 0.0087 26 1 -0.3635 0.5214 0.8856 27 1 -0.3633 0.5063 -0.8944 28 1 1.9804 -1.8116 -1.0821 29 1 1.4188 -0.4741 -2.1021 30 1 3.7207 -0.9079 -2.4795 31 1 3.4972 0.6806 -1.7255 32 1 5.4167 -0.8507 -0.8351 33 1 4.1159 -1.7623 -0.0281 34 1 6.2384 -1.5926 0.9291 35 1 7.1730 -0.7235 2.1702 36 1 5.5050 -1.2413 2.5126 37 1 6.8231 0.2575 -0.5290 38 1 6.1683 1.8785 -0.1947 39 1 7.7050 2.1003 1.7388 40 1 8.3597 0.4792 1.4044 41 1 9.0995 1.2394 -0.8365 42 1 8.4451 2.8607 -0.5028 43 1 9.9822 3.0822 1.4308 44 1 10.6361 1.4608 1.0966 45 1 13.6322 3.5400 1.6069 46 1 3.1119 0.7830 2.3308 47 1 3.8199 -0.8393 2.4240 48 1 1.2760 -0.6655 2.0016 49 1 2.2061 -1.7655 0.9693 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697864125.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:56 Heat of formation + Delta-G solvation = -37.507340 kcal Electronic energy + Delta-G solvation = -21030.018757 eV Core-core repulsion = 18183.354826 eV Total energy + Delta-G solvation = -2846.663931 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.06853 -37.21717 -34.51429 -32.98075 -32.54612 -31.21045 -28.46183 -27.69321 -26.11169 -25.03830 -23.64463 -22.62122 -20.89103 -20.51375 -19.93622 -18.73246 -16.27108 -15.97166 -15.67430 -15.33557 -14.99860 -14.69005 -14.42117 -13.89694 -13.68971 -13.65162 -13.30548 -12.90931 -12.63866 -12.45297 -12.33649 -12.09921 -11.69426 -11.64444 -11.44667 -11.35815 -11.14557 -10.92863 -10.85028 -10.74225 -10.60178 -10.48459 -10.41305 -10.37033 -10.28062 -10.17378 -9.55265 -9.20985 -8.95089 -8.30073 -8.10135 -5.95001 -3.96937 3.33585 3.40763 3.45171 3.97748 4.34101 4.46897 4.50259 4.68299 4.86461 4.92453 4.94897 5.13129 5.18146 5.24676 5.35851 5.38982 5.40531 5.44289 5.49314 5.50081 5.64233 5.66011 5.67497 5.77152 5.82826 5.89870 5.90790 5.95480 6.01566 6.02701 6.06493 6.09795 6.19265 6.24733 6.26344 6.33654 6.35120 6.59647 6.88350 7.03764 7.16812 7.25058 7.34557 7.75056 7.91332 8.06744 8.49683 9.10938 9.66765 11.16449 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.039594 B = 0.002866 C = 0.002767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.000219 B = 9767.105756 C =10115.908762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.150 4.150 7 C 0.086 3.914 8 H 0.077 0.923 9 N -0.540 5.540 10 C 0.016 3.984 11 C 0.056 3.944 12 C -0.113 4.113 13 C -0.109 4.109 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.109 4.109 24 C -0.112 4.112 25 H 0.052 0.948 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.025 0.975 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.032 0.968 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.046 0.954 43 H 0.015 0.985 44 H 0.014 0.986 45 H 0.259 0.741 46 H 0.063 0.937 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.184 -9.821 -1.768 26.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.153 4.153 6 C -0.188 4.188 7 C -0.022 4.022 8 H 0.095 0.905 9 N -0.263 5.263 10 C -0.132 4.132 11 C -0.071 4.071 12 C -0.151 4.151 13 C -0.147 4.147 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.147 4.147 24 C -0.150 4.150 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.044 0.956 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.032 0.968 45 H 0.069 0.931 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -24.073 -9.454 -1.246 25.893 hybrid contribution 0.876 -0.176 -1.312 1.588 sum -23.196 -9.630 -2.558 25.246 Atomic orbital electron populations 1.21885 0.95341 1.01521 1.01534 1.20937 0.95118 1.00176 0.94852 0.90814 1.20539 0.96416 1.00205 0.97641 1.20381 0.95063 1.01623 0.98282 1.22049 0.99784 1.00135 0.96869 1.21551 0.89301 0.98191 0.93181 0.90524 1.62229 1.01980 1.25221 1.36850 1.22473 1.01202 0.90254 0.99244 1.22239 0.93409 0.98297 0.93164 1.21671 0.93436 1.00816 0.99210 1.21593 0.96993 0.98780 0.97325 1.19089 0.90445 0.96427 0.95636 1.21334 0.99074 1.40082 0.95157 0.92753 1.25041 0.98292 0.96108 0.95167 1.69983 1.20534 1.47994 1.15091 0.86560 0.81085 0.78866 0.81638 1.19781 1.21031 1.21059 1.21951 0.94020 1.01242 0.97512 1.21406 0.96671 0.99654 0.97222 0.92893 0.92726 0.92863 0.92406 0.92434 0.92489 0.92098 0.91366 0.91715 0.95646 0.90877 0.91701 0.95005 0.91299 0.91783 0.92617 0.93795 0.93540 0.96624 0.96779 0.93131 0.91778 0.91667 0.92179 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.87 37.16 0.33 -0.64 16 2 C -0.09 -0.71 2.40 -91.23 -0.22 -0.93 16 3 H 0.07 0.63 6.97 -51.93 -0.36 0.27 16 4 C -0.11 -0.86 4.69 -29.60 -0.14 -1.00 16 5 C -0.12 -1.03 5.24 -29.70 -0.16 -1.18 16 6 C -0.15 -1.50 3.70 -27.44 -0.10 -1.61 16 7 C 0.09 0.94 1.70 -68.41 -0.12 0.82 16 8 H 0.08 0.88 6.42 -51.93 -0.33 0.55 16 9 N -0.54 -7.09 4.70 -235.73 -1.11 -8.20 16 10 C 0.02 0.20 8.79 60.06 0.53 0.73 16 11 C 0.06 0.83 4.53 -3.82 -0.02 0.81 16 12 C -0.11 -2.01 5.15 -26.73 -0.14 -2.15 16 13 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 16 H 0.05 1.54 7.74 -52.48 -0.41 1.13 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.59 13.29 55.43 0.74 -26.85 16 19 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 23 C -0.11 -1.04 5.37 -25.62 -0.14 -1.18 16 24 C -0.11 -0.89 4.89 -27.44 -0.13 -1.02 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.35 8.11 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.13 -51.93 -0.42 -0.08 16 28 H 0.06 0.45 7.47 -51.93 -0.39 0.06 16 29 H 0.06 0.42 7.97 -51.93 -0.41 0.01 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.57 7.47 -51.93 -0.39 0.18 16 32 H 0.07 0.78 5.41 -51.93 -0.28 0.50 16 33 H 0.06 0.63 7.00 -51.93 -0.36 0.27 16 34 H 0.03 0.30 6.65 -51.93 -0.35 -0.05 16 35 H 0.07 0.97 6.30 -51.93 -0.33 0.64 16 36 H 0.06 0.70 6.12 -51.93 -0.32 0.38 16 37 H 0.03 0.47 6.50 -51.93 -0.34 0.13 16 38 H 0.07 1.01 7.93 -51.93 -0.41 0.60 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.06 0.99 6.47 -51.93 -0.34 0.66 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.64 5.85 -51.93 -0.30 0.33 16 48 H 0.06 0.45 7.68 -51.93 -0.40 0.05 16 49 H 0.06 0.46 6.64 -51.93 -0.34 0.12 16 LS Contribution 355.14 15.07 5.35 5.35 Total: -1.00 -30.00 355.14 -10.45 -40.45 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: -9.42 Total: -4.53 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: -0.99 Total: -23.28 kcal Atomic # 7 Polarization: -34.68 SS G_CDS: -0.37 Total: -35.05 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.00 -10.45 -40.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697864125.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.942 kcal (2) G-P(sol) polarization free energy of solvation -30.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds