Wall clock time and date at job start Mon Mar 30 2020 07:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.62010 * 2 1 4 4 C 1.50473 * 109.62892 * 120.57865 * 2 1 3 5 5 C 1.54073 * 112.49731 * 213.86892 * 4 2 1 6 6 C 1.53816 * 112.88545 * 318.12705 * 5 4 2 7 7 C 1.50474 * 112.64364 * 318.57897 * 6 5 4 8 8 H 1.09008 * 109.62805 * 334.08502 * 7 6 5 9 9 N 1.46894 * 109.63035 * 213.69705 * 7 6 5 10 10 C 1.46908 * 111.00184 * 73.05990 * 9 7 6 11 11 C 1.46899 * 111.00097 * 309.10449 * 9 7 6 12 12 C 1.53004 * 109.47121 * 200.03458 * 11 9 7 13 13 C 1.53000 * 109.46954 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47335 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47331 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00262 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99984 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00093 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46844 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47077 * 120.00189 * 19 17 15 22 22 H 1.48504 * 109.46809 * 240.00395 * 19 17 15 23 23 C 1.54239 * 108.68195 * 93.88812 * 7 6 5 24 24 C 1.45537 * 112.40893 * 280.10876 * 23 7 6 25 25 H 1.09008 * 109.46684 * 180.38881 * 1 2 3 26 26 H 1.08995 * 109.47117 * 300.38243 * 1 2 3 27 27 H 1.08997 * 109.47445 * 60.39346 * 1 2 3 28 28 H 1.09003 * 108.87998 * 334.63855 * 4 2 1 29 29 H 1.08993 * 108.87670 * 93.18865 * 4 2 1 30 30 H 1.08993 * 108.81555 * 79.13979 * 5 4 2 31 31 H 1.08996 * 108.81096 * 197.53462 * 5 4 2 32 32 H 1.08997 * 108.93795 * 197.66783 * 6 5 4 33 33 H 1.09000 * 108.67497 * 79.30734 * 6 5 4 34 34 H 1.09000 * 109.46413 * 299.88595 * 10 9 7 35 35 H 1.09002 * 109.46735 * 59.88477 * 10 9 7 36 36 H 1.08995 * 109.47248 * 179.89240 * 10 9 7 37 37 H 1.09005 * 109.47200 * 80.03685 * 11 9 7 38 38 H 1.08999 * 109.46995 * 320.03812 * 11 9 7 39 39 H 1.09000 * 109.46987 * 60.00520 * 12 11 9 40 40 H 1.08999 * 109.47474 * 300.00060 * 12 11 9 41 41 H 1.08996 * 109.47493 * 60.00144 * 13 12 11 42 42 H 1.09004 * 109.47532 * 300.00476 * 13 12 11 43 43 H 1.08999 * 109.46886 * 299.99949 * 14 13 12 44 44 H 1.09005 * 109.47105 * 59.99697 * 14 13 12 45 45 H 0.97001 * 119.99994 * 180.02562 * 18 17 15 46 46 H 1.08996 * 108.89522 * 40.86819 * 23 7 6 47 47 H 1.09004 * 108.89637 * 159.35565 * 23 7 6 48 48 H 1.08999 * 108.89580 * 182.68861 * 24 23 7 49 49 H 1.08999 * 108.89823 * 301.28228 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0355 -0.7210 1.2202 5 6 3.3468 -0.1185 1.7600 6 6 4.3407 0.2474 0.6445 7 6 4.4029 -0.7934 -0.4404 8 1 4.1148 -1.7632 -0.0344 9 7 5.7693 -0.8684 -0.9745 10 6 6.6731 -1.5222 -0.0186 11 6 6.2653 0.4650 -1.3406 12 6 7.4306 0.3239 -2.3219 13 6 7.9468 1.7127 -2.7037 14 6 9.1117 1.5718 -3.6855 15 6 9.6206 2.9396 -4.0610 16 1 9.1590 3.8214 -3.6417 17 6 10.6754 3.0655 -4.9399 18 7 11.2372 1.9917 -5.4509 19 14 11.3066 4.7610 -5.4049 20 1 10.5105 5.7965 -4.6982 21 1 12.7340 4.8822 -5.0137 22 1 11.1774 4.9522 -6.8719 23 6 3.4277 -0.3926 -1.5661 24 6 2.0482 -0.7348 -1.2531 25 1 -0.3633 -1.0277 0.0070 26 1 -0.3633 0.5197 0.8865 27 1 -0.3634 0.5077 -0.8934 28 1 1.2762 -0.6689 2.0005 29 1 2.2080 -1.7667 0.9657 30 1 3.1120 0.7790 2.3320 31 1 3.8200 -0.8433 2.4224 32 1 5.3334 0.3634 1.0793 33 1 4.0373 1.1975 0.2047 34 1 6.6935 -0.9522 0.9102 35 1 6.3190 -2.5331 0.1831 36 1 7.6774 -1.5662 -0.4400 37 1 6.6055 0.9847 -0.4448 38 1 5.4629 1.0352 -1.8087 39 1 7.0904 -0.1956 -3.2177 40 1 8.2330 -0.2463 -1.8538 41 1 8.2869 2.2328 -1.8082 42 1 7.1443 2.2826 -3.1720 43 1 9.9144 1.0018 -3.2175 44 1 8.7713 1.0518 -4.5810 45 1 11.9796 2.0803 -6.0690 46 1 3.4969 0.6833 -1.7265 47 1 3.7187 -0.9038 -2.4838 48 1 1.4179 -0.4717 -2.1025 49 1 1.9809 -1.8094 -1.0835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697864127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:58 Heat of formation + Delta-G solvation = -41.359296 kcal Electronic energy + Delta-G solvation = -21126.619589 eV Core-core repulsion = 18279.788625 eV Total energy + Delta-G solvation = -2846.830964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.04086 -37.09777 -34.45193 -32.79768 -32.48673 -31.61236 -28.63590 -27.57594 -25.97615 -24.89414 -23.28707 -22.79287 -21.47117 -20.08930 -19.95813 -18.74836 -16.27804 -15.97513 -15.36896 -15.26264 -14.88876 -14.73189 -14.40290 -14.16108 -13.78569 -13.57718 -13.16713 -13.06685 -12.58788 -12.37677 -12.12498 -11.96620 -11.78518 -11.68868 -11.58909 -11.44168 -11.03056 -10.94755 -10.84347 -10.74553 -10.58406 -10.49159 -10.39923 -10.36125 -10.24779 -10.09805 -9.54582 -9.20638 -8.94565 -8.29517 -8.13010 -5.94425 -3.96366 3.33850 3.41004 3.45428 4.02468 4.37118 4.48322 4.51329 4.63613 4.86839 4.94630 5.01104 5.06679 5.25602 5.26610 5.33527 5.37190 5.41076 5.45226 5.51176 5.55824 5.61213 5.67117 5.74619 5.76748 5.84273 5.87712 5.97507 6.00463 6.02405 6.08004 6.09005 6.12315 6.18566 6.25860 6.30346 6.31939 6.38449 6.62189 6.89775 7.05930 7.17336 7.27316 7.35640 7.75885 7.92412 8.07465 8.50421 9.11568 9.67307 11.16982 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030882 B = 0.003060 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.455832 B = 9149.160481 C = 9475.653986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.112 4.112 6 C -0.150 4.150 7 C 0.090 3.910 8 H 0.079 0.921 9 N -0.537 5.537 10 C 0.022 3.978 11 C 0.054 3.946 12 C -0.111 4.111 13 C -0.109 4.109 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.112 4.112 24 C -0.109 4.109 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.023 0.977 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.031 0.969 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.045 0.955 43 H 0.014 0.986 44 H 0.015 0.985 45 H 0.259 0.741 46 H 0.059 0.941 47 H 0.072 0.928 48 H 0.060 0.940 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.969 -7.263 14.031 25.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.150 4.150 6 C -0.189 4.189 7 C -0.019 4.019 8 H 0.097 0.903 9 N -0.259 5.259 10 C -0.126 4.126 11 C -0.073 4.073 12 C -0.149 4.149 13 C -0.147 4.147 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.150 4.150 24 C -0.147 4.147 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.042 0.958 35 H 0.080 0.920 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.032 0.968 44 H 0.034 0.966 45 H 0.069 0.931 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -19.835 -7.612 13.482 25.162 hybrid contribution 0.550 1.436 0.472 1.608 sum -19.285 -6.177 13.954 24.592 Atomic orbital electron populations 1.21889 0.95378 1.01563 1.01474 1.20939 0.95087 1.00118 0.94968 0.90985 1.21417 0.96498 0.99873 0.97282 1.21792 0.95177 1.00488 0.97547 1.22038 0.99308 1.00374 0.97215 1.21425 0.89007 0.98343 0.93110 0.90324 1.62274 1.01404 1.21241 1.40995 1.22409 0.97788 0.98410 0.93969 1.22263 0.98283 0.88675 0.98119 1.21628 0.95908 0.99002 0.98365 1.21594 0.99427 0.94045 0.99651 1.19087 0.92075 0.96779 0.93635 1.21339 1.15537 0.92930 1.25856 0.92763 1.25038 0.96760 0.96517 0.96268 1.69983 1.24133 1.27971 1.31505 0.86568 0.78669 0.84740 0.78217 1.19774 1.21066 1.21030 1.20492 0.93878 1.01591 0.98991 1.20511 0.96416 1.00229 0.97495 0.92830 0.92931 0.92747 0.92400 0.92139 0.92495 0.92601 0.92010 0.91896 0.95814 0.91978 0.90915 0.95030 0.91139 0.91877 0.92783 0.93839 0.93611 0.96778 0.96632 0.93137 0.92272 0.90889 0.92090 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.87 37.16 0.33 -0.69 16 2 C -0.09 -0.74 2.39 -91.23 -0.22 -0.96 16 3 H 0.07 0.64 7.01 -51.93 -0.36 0.28 16 4 C -0.11 -0.88 4.89 -27.43 -0.13 -1.02 16 5 C -0.11 -0.95 5.85 -25.75 -0.15 -1.10 16 6 C -0.15 -1.53 3.77 -27.57 -0.10 -1.64 16 7 C 0.09 0.98 1.85 -68.33 -0.13 0.85 16 8 H 0.08 0.83 6.87 -51.92 -0.36 0.48 16 9 N -0.54 -7.03 4.62 -235.62 -1.09 -8.12 16 10 C 0.02 0.27 9.17 60.07 0.55 0.82 16 11 C 0.05 0.79 3.88 -3.82 -0.01 0.78 16 12 C -0.11 -1.98 5.33 -26.73 -0.14 -2.13 16 13 C -0.11 -2.32 5.15 -26.73 -0.14 -2.46 16 14 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 15 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 19 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 C -0.11 -1.18 4.15 -29.60 -0.12 -1.30 16 24 C -0.11 -0.95 4.69 -29.60 -0.14 -1.08 16 25 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 26 H 0.05 0.34 8.11 -51.93 -0.42 -0.08 16 27 H 0.05 0.37 8.13 -51.93 -0.42 -0.05 16 28 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 29 H 0.06 0.48 6.63 -51.93 -0.34 0.13 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.70 5.44 -51.93 -0.28 0.41 16 33 H 0.06 0.68 6.66 -51.93 -0.35 0.33 16 34 H 0.02 0.27 6.62 -51.93 -0.34 -0.07 16 35 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 36 H 0.07 0.93 6.79 -51.93 -0.35 0.58 16 37 H 0.03 0.47 7.10 -51.93 -0.37 0.10 16 38 H 0.07 1.03 6.39 -51.93 -0.33 0.69 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.05 0.97 6.89 -51.93 -0.36 0.62 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 43 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.06 0.66 6.51 -51.93 -0.34 0.32 16 47 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 48 H 0.06 0.51 7.97 -51.93 -0.41 0.10 16 49 H 0.06 0.50 7.46 -51.93 -0.39 0.12 16 LS Contribution 357.97 15.07 5.39 5.39 Total: -1.00 -30.06 357.97 -10.53 -40.60 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -9.60 Total: -4.64 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: -0.96 Total: -23.42 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: -0.35 Total: -35.00 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.06 -10.53 -40.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697864127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.764 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds