Wall clock time and date at job start Mon Mar 30 2020 07:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.62010 * 2 1 4 4 C 1.50473 * 109.62892 * 120.57865 * 2 1 3 5 5 C 1.54073 * 112.49731 * 213.86892 * 4 2 1 6 6 C 1.53816 * 112.88545 * 318.12705 * 5 4 2 7 7 C 1.50474 * 112.64364 * 318.57897 * 6 5 4 8 8 H 1.09008 * 109.62805 * 334.08502 * 7 6 5 9 9 N 1.46894 * 109.63035 * 213.69705 * 7 6 5 10 10 C 1.46908 * 111.00184 * 73.05990 * 9 7 6 11 11 C 1.46899 * 111.00097 * 309.10449 * 9 7 6 12 12 C 1.53004 * 109.47121 * 200.03458 * 11 9 7 13 13 C 1.53000 * 109.46954 * 179.97438 * 12 11 9 14 14 C 1.52998 * 109.47335 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47331 * 180.02562 * 14 13 12 16 16 H 1.07999 * 120.00262 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99984 * 179.97438 * 15 14 13 18 18 N 1.31516 * 120.00093 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00110 * 180.02562 * 17 15 14 20 20 H 1.48506 * 109.46844 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47077 * 120.00189 * 19 17 15 22 22 H 1.48504 * 109.46809 * 240.00395 * 19 17 15 23 23 C 1.54239 * 108.68195 * 93.88812 * 7 6 5 24 24 C 1.45537 * 112.40893 * 280.10876 * 23 7 6 25 25 H 1.09008 * 109.46684 * 180.38881 * 1 2 3 26 26 H 1.08995 * 109.47117 * 300.38243 * 1 2 3 27 27 H 1.08997 * 109.47445 * 60.39346 * 1 2 3 28 28 H 1.09003 * 108.87998 * 334.63855 * 4 2 1 29 29 H 1.08993 * 108.87670 * 93.18865 * 4 2 1 30 30 H 1.08993 * 108.81555 * 79.13979 * 5 4 2 31 31 H 1.08996 * 108.81096 * 197.53462 * 5 4 2 32 32 H 1.08997 * 108.93795 * 197.66783 * 6 5 4 33 33 H 1.09000 * 108.67497 * 79.30734 * 6 5 4 34 34 H 1.09000 * 109.46413 * 299.88595 * 10 9 7 35 35 H 1.09002 * 109.46735 * 59.88477 * 10 9 7 36 36 H 1.08995 * 109.47248 * 179.89240 * 10 9 7 37 37 H 1.09005 * 109.47200 * 80.03685 * 11 9 7 38 38 H 1.08999 * 109.46995 * 320.03812 * 11 9 7 39 39 H 1.09000 * 109.46987 * 60.00520 * 12 11 9 40 40 H 1.08999 * 109.47474 * 300.00060 * 12 11 9 41 41 H 1.08996 * 109.47493 * 60.00144 * 13 12 11 42 42 H 1.09004 * 109.47532 * 300.00476 * 13 12 11 43 43 H 1.08999 * 109.46886 * 299.99949 * 14 13 12 44 44 H 1.09005 * 109.47105 * 59.99697 * 14 13 12 45 45 H 0.97001 * 119.99994 * 180.02562 * 18 17 15 46 46 H 1.08996 * 108.89522 * 40.86819 * 23 7 6 47 47 H 1.09004 * 108.89637 * 159.35565 * 23 7 6 48 48 H 1.08999 * 108.89580 * 182.68861 * 24 23 7 49 49 H 1.08999 * 108.89823 * 301.28228 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8960 1.0267 0.0000 4 6 2.0355 -0.7210 1.2202 5 6 3.3468 -0.1185 1.7600 6 6 4.3407 0.2474 0.6445 7 6 4.4029 -0.7934 -0.4404 8 1 4.1148 -1.7632 -0.0344 9 7 5.7693 -0.8684 -0.9745 10 6 6.6731 -1.5222 -0.0186 11 6 6.2653 0.4650 -1.3406 12 6 7.4306 0.3239 -2.3219 13 6 7.9468 1.7127 -2.7037 14 6 9.1117 1.5718 -3.6855 15 6 9.6206 2.9396 -4.0610 16 1 9.1590 3.8214 -3.6417 17 6 10.6754 3.0655 -4.9399 18 7 11.2372 1.9917 -5.4509 19 14 11.3066 4.7610 -5.4049 20 1 10.5105 5.7965 -4.6982 21 1 12.7340 4.8822 -5.0137 22 1 11.1774 4.9522 -6.8719 23 6 3.4277 -0.3926 -1.5661 24 6 2.0482 -0.7348 -1.2531 25 1 -0.3633 -1.0277 0.0070 26 1 -0.3633 0.5197 0.8865 27 1 -0.3634 0.5077 -0.8934 28 1 1.2762 -0.6689 2.0005 29 1 2.2080 -1.7667 0.9657 30 1 3.1120 0.7790 2.3320 31 1 3.8200 -0.8433 2.4224 32 1 5.3334 0.3634 1.0793 33 1 4.0373 1.1975 0.2047 34 1 6.6935 -0.9522 0.9102 35 1 6.3190 -2.5331 0.1831 36 1 7.6774 -1.5662 -0.4400 37 1 6.6055 0.9847 -0.4448 38 1 5.4629 1.0352 -1.8087 39 1 7.0904 -0.1956 -3.2177 40 1 8.2330 -0.2463 -1.8538 41 1 8.2869 2.2328 -1.8082 42 1 7.1443 2.2826 -3.1720 43 1 9.9144 1.0018 -3.2175 44 1 8.7713 1.0518 -4.5810 45 1 11.9796 2.0803 -6.0690 46 1 3.4969 0.6833 -1.7265 47 1 3.7187 -0.9038 -2.4838 48 1 1.4179 -0.4717 -2.1025 49 1 1.9809 -1.8094 -1.0835 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697864127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:57:58 Heat of formation + Delta-G solvation = -56.797289 kcal Electronic energy + Delta-G solvation = -21127.289030 eV Core-core repulsion = 18279.788625 eV Total energy + Delta-G solvation = -2847.500406 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89432 -38.07610 -36.21100 -34.35069 -33.44255 -32.74958 -30.35044 -28.29706 -27.24365 -26.25977 -24.30243 -23.87995 -22.69902 -21.74090 -20.86233 -19.62967 -18.43264 -17.03972 -16.56376 -16.48937 -16.04723 -15.83453 -15.58119 -15.23446 -14.79842 -14.51235 -14.32296 -14.02346 -13.84894 -13.70307 -13.46858 -13.24016 -12.99885 -12.83928 -12.69199 -12.66927 -12.33168 -12.28940 -12.26566 -11.98385 -11.78114 -11.64199 -11.42569 -11.34036 -11.29879 -11.17038 -11.12887 -10.95659 -10.89216 -10.56337 -9.16154 -8.20161 -6.31785 1.39016 1.39687 1.53259 2.40582 3.01028 3.12400 3.61616 3.73894 3.95321 4.07993 4.16892 4.19630 4.26362 4.30702 4.32287 4.46835 4.51397 4.54169 4.59215 4.61278 4.70197 4.77358 4.81333 4.88050 4.92139 4.94679 4.98562 5.07985 5.12350 5.15161 5.18400 5.24272 5.27741 5.28989 5.33010 5.38189 5.43174 5.44885 5.48046 5.50002 5.55998 5.64633 5.77735 5.86728 6.19431 6.25030 6.30149 6.85906 7.37563 8.92038 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030882 B = 0.003060 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.455832 B = 9149.160481 C = 9475.653986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.062 0.938 4 C -0.111 4.111 5 C -0.108 4.108 6 C -0.145 4.145 7 C 0.093 3.907 8 H 0.087 0.913 9 N -0.549 5.549 10 C 0.023 3.977 11 C 0.068 3.932 12 C -0.101 4.101 13 C -0.096 4.096 14 C 0.024 3.976 15 C -0.544 4.544 16 H 0.059 0.941 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.107 4.107 24 C -0.106 4.106 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.031 0.969 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.072 0.928 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.048 0.952 42 H 0.049 0.951 43 H -0.012 1.012 44 H -0.012 1.012 45 H 0.264 0.736 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.063 0.937 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.262 -6.595 15.162 26.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.109 4.109 3 H 0.081 0.919 4 C -0.148 4.148 5 C -0.147 4.147 6 C -0.184 4.184 7 C -0.015 4.015 8 H 0.105 0.895 9 N -0.271 5.271 10 C -0.125 4.125 11 C -0.060 4.060 12 C -0.139 4.139 13 C -0.134 4.134 14 C -0.013 4.013 15 C -0.582 4.582 16 H 0.078 0.922 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.202 1.202 23 C -0.145 4.145 24 C -0.144 4.144 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.096 0.904 36 H 0.078 0.922 37 H 0.052 0.948 38 H 0.091 0.909 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.076 0.924 48 H 0.082 0.918 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.145 -6.950 14.627 26.634 hybrid contribution 0.964 1.173 0.103 1.522 sum -20.181 -5.777 14.729 25.644 Atomic orbital electron populations 1.21866 0.94421 1.02026 1.01773 1.20904 0.95867 0.99430 0.94660 0.91937 1.21401 0.96306 0.99722 0.97391 1.21766 0.95119 1.00880 0.96902 1.21962 0.99323 0.99739 0.97380 1.21455 0.87609 0.99057 0.93363 0.89478 1.62214 1.02643 1.20123 1.42155 1.22423 0.96976 0.99317 0.93819 1.21997 0.96917 0.89848 0.97246 1.21458 0.97048 0.96569 0.98797 1.21397 0.97432 0.96274 0.98304 1.19008 0.93227 0.95403 0.93655 1.21769 1.16139 0.93900 1.26351 0.92227 1.26036 0.96901 1.01134 0.96019 1.70117 1.24699 1.30644 1.32078 0.85374 0.78171 0.79249 0.78102 1.18513 1.20267 1.20249 1.20461 0.94971 1.00777 0.98256 1.20477 0.95196 1.00641 0.98095 0.92274 0.92343 0.92798 0.91333 0.91990 0.92129 0.92096 0.92982 0.92620 0.95094 0.90357 0.92229 0.94764 0.90927 0.92966 0.93234 0.93346 0.93180 0.99343 0.99315 0.92761 0.93155 0.92405 0.91843 0.91716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 8.87 71.98 0.64 -1.07 16 2 C -0.09 -1.28 2.39 -11.19 -0.03 -1.31 16 3 H 0.06 1.03 7.01 -2.39 -0.02 1.01 16 4 C -0.11 -1.47 4.89 30.14 0.15 -1.32 16 5 C -0.11 -1.63 5.85 31.23 0.18 -1.44 16 6 C -0.15 -2.76 3.77 30.05 0.11 -2.65 16 7 C 0.09 1.91 1.85 44.52 0.08 1.99 16 8 H 0.09 1.67 6.87 -2.38 -0.02 1.65 16 9 N -0.55 -13.95 4.62 -899.37 -4.15 -18.10 16 10 C 0.02 0.52 9.17 127.69 1.17 1.69 16 11 C 0.07 1.96 3.88 86.30 0.34 2.30 16 12 C -0.10 -3.64 5.33 30.60 0.16 -3.48 16 13 C -0.10 -4.13 5.15 30.59 0.16 -3.97 16 14 C 0.02 1.34 4.97 29.85 0.15 1.49 16 15 C -0.54 -32.12 9.11 25.60 0.23 -31.89 16 16 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 17 C 0.00 -0.21 5.46 84.65 0.46 0.25 16 18 N -0.93 -58.60 13.29 21.45 0.28 -58.32 16 19 Si 0.97 45.28 29.54 68.60 2.03 47.30 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 C -0.11 -2.16 4.15 28.73 0.12 -2.04 16 24 C -0.11 -1.70 4.69 28.73 0.13 -1.56 16 25 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 26 H 0.06 0.63 8.11 -2.39 -0.02 0.61 16 27 H 0.05 0.65 8.13 -2.39 -0.02 0.63 16 28 H 0.07 0.79 7.68 -2.39 -0.02 0.77 16 29 H 0.06 0.82 6.63 -2.39 -0.02 0.80 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.05 1.10 5.44 -2.39 -0.01 1.09 16 33 H 0.06 1.14 6.66 -2.39 -0.02 1.12 16 34 H 0.03 0.66 6.62 -2.39 -0.02 0.65 16 35 H 0.08 1.53 8.11 -2.39 -0.02 1.51 16 36 H 0.06 1.51 6.79 -2.39 -0.02 1.50 16 37 H 0.03 0.98 7.10 -2.38 -0.02 0.96 16 38 H 0.07 2.07 6.39 -2.39 -0.02 2.06 16 39 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 40 H 0.05 1.82 6.89 -2.39 -0.02 1.81 16 41 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 42 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 43 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 44 H -0.01 -0.69 8.14 -2.38 -0.02 -0.71 16 45 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 46 H 0.05 1.10 6.51 -2.39 -0.02 1.08 16 47 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 48 H 0.06 0.99 7.97 -2.39 -0.02 0.97 16 49 H 0.06 0.98 7.46 -2.39 -0.02 0.96 16 Total: -1.00 -64.49 357.97 3.08 -61.40 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.87 Total: 10.74 kcal Atomic # 6 Polarization: -47.09 SS G_CDS: 4.06 Total: -43.03 kcal Atomic # 7 Polarization: -72.55 SS G_CDS: -3.87 Total: -76.42 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -64.49 3.08 -61.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697864127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.607 kcal (2) G-P(sol) polarization free energy of solvation -64.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds