Wall clock time and date at job start Mon Mar 30 2020 07:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 108.87708 * 2 1 4 4 C 1.54243 * 108.89576 * 241.39645 * 2 1 3 5 5 C 1.50475 * 108.68095 * 159.16039 * 4 2 1 6 6 C 1.54266 * 112.38722 * 93.93587 * 5 4 2 7 7 C 1.54075 * 112.94838 * 318.57974 * 6 5 4 8 8 H 1.08997 * 108.87547 * 78.94750 * 7 6 5 9 9 N 1.46905 * 108.79284 * 197.44498 * 7 6 5 10 10 C 1.46904 * 110.99815 * 72.30876 * 9 7 6 11 11 C 1.46901 * 110.99599 * 196.25854 * 9 7 6 12 12 C 1.52997 * 109.47052 * 170.00224 * 11 9 7 13 13 C 1.53006 * 109.47145 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47145 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47167 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99933 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99807 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00278 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99634 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47240 * 60.00208 * 19 17 15 21 21 H 1.48507 * 109.46860 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47032 * 300.00105 * 19 17 15 23 23 C 1.50469 * 112.49480 * 318.16682 * 7 6 5 24 24 C 1.45544 * 108.89425 * 118.51125 * 2 1 3 25 25 H 1.09000 * 109.47643 * 178.59962 * 1 2 3 26 26 H 1.09007 * 109.47082 * 298.60571 * 1 2 3 27 27 H 1.09005 * 109.46986 * 58.60135 * 1 2 3 28 28 H 1.09001 * 109.62652 * 278.96583 * 4 2 1 29 29 H 1.08998 * 109.63013 * 39.35409 * 4 2 1 30 30 H 1.08996 * 108.87679 * 215.02772 * 5 4 2 31 31 H 1.08994 * 108.87881 * 333.47446 * 5 4 2 32 32 H 1.08998 * 108.83567 * 197.61338 * 6 5 4 33 33 H 1.09008 * 108.57073 * 79.35345 * 6 5 4 34 34 H 1.09004 * 109.47190 * 66.31634 * 10 9 7 35 35 H 1.08996 * 109.47059 * 186.31199 * 10 9 7 36 36 H 1.08995 * 109.47114 * 306.31420 * 10 9 7 37 37 H 1.09002 * 109.47114 * 290.00610 * 11 9 7 38 38 H 1.08999 * 109.47177 * 49.99872 * 11 9 7 39 39 H 1.08993 * 109.46912 * 300.00280 * 12 11 9 40 40 H 1.09003 * 109.46798 * 60.00478 * 12 11 9 41 41 H 1.08998 * 109.47074 * 299.99962 * 13 12 11 42 42 H 1.08996 * 109.46554 * 60.00238 * 13 12 11 43 43 H 1.08997 * 109.47285 * 300.00706 * 14 13 12 44 44 H 1.09006 * 109.47015 * 59.99846 * 14 13 12 45 45 H 0.96996 * 120.00092 * 179.97438 * 18 17 15 46 46 H 1.09004 * 109.63125 * 334.44144 * 23 7 6 47 47 H 1.08995 * 109.62747 * 213.86438 * 23 7 6 48 48 H 1.09000 * 108.89446 * 303.44530 * 24 2 1 49 49 H 1.09002 * 108.89986 * 62.03232 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8826 1.0314 0.0000 4 6 2.0294 -0.6986 -1.2812 5 6 3.4459 -0.2652 -1.5455 6 6 4.4803 -1.2414 -0.9482 7 6 4.0934 -1.7407 0.4572 8 1 3.3433 -2.5254 0.3584 9 7 5.2862 -2.3029 1.1047 10 6 6.2239 -1.2410 1.4935 11 6 4.9169 -3.1288 2.2620 12 6 6.1468 -3.8926 2.7567 13 6 5.7623 -4.7524 3.9625 14 6 6.9921 -5.5167 4.4568 15 6 6.6136 -6.3630 5.6448 16 1 5.5974 -6.3568 6.0105 17 6 7.5644 -7.1461 6.2643 18 7 8.8017 -7.1541 5.8188 19 14 7.0949 -8.1958 7.7365 20 1 6.0384 -9.1608 7.3397 21 1 8.2887 -8.9375 8.2164 22 1 6.5848 -7.3229 8.8242 23 6 3.5393 -0.6439 1.3255 24 6 2.0012 -0.6573 1.2100 25 1 -0.3634 -1.0273 -0.0251 26 1 -0.3633 0.4921 0.9023 27 1 -0.3633 0.5354 -0.8772 28 1 1.9966 -1.7796 -1.1453 29 1 1.3970 -0.4160 -2.1227 30 1 3.5986 -0.1966 -2.6226 31 1 3.6012 0.7200 -1.1059 32 1 5.4456 -0.7386 -0.8892 33 1 4.5719 -2.1001 -1.6134 34 1 5.7746 -0.6276 2.2746 35 1 7.1447 -1.6885 1.8676 36 1 6.4480 -0.6190 0.6270 37 1 4.5413 -2.4886 3.0603 38 1 4.1421 -3.8377 1.9701 39 1 6.5223 -4.5327 1.9585 40 1 6.9215 -3.1836 3.0488 41 1 5.3871 -4.1119 4.7607 42 1 4.9875 -5.4613 3.6709 43 1 7.3670 -6.1572 3.6585 44 1 7.7674 -4.8080 4.7483 45 1 9.4706 -7.7047 6.2548 46 1 3.9233 0.3191 0.9888 47 1 3.8302 -0.8151 2.3618 48 1 1.5778 -0.1484 2.0759 49 1 1.6580 -1.6919 1.2064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697864129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:01 Heat of formation + Delta-G solvation = -38.705150 kcal Electronic energy + Delta-G solvation = -21037.423197 eV Core-core repulsion = 18190.707325 eV Total energy + Delta-G solvation = -2846.715872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.07137 -37.25260 -34.56636 -33.16716 -32.29912 -31.04889 -28.61029 -27.47536 -26.35050 -24.68676 -23.87958 -22.72544 -20.74171 -20.43240 -19.93805 -18.88059 -16.30902 -16.08840 -15.55469 -15.40254 -15.01497 -14.64443 -14.42568 -13.90056 -13.66677 -13.58274 -13.09429 -12.93162 -12.64108 -12.46520 -12.24639 -11.97388 -11.91220 -11.67357 -11.52526 -11.41087 -11.03236 -10.91137 -10.84908 -10.72847 -10.56780 -10.53668 -10.41621 -10.40281 -10.30909 -10.21326 -9.55233 -9.20685 -8.96651 -8.29292 -8.10844 -5.94468 -3.96642 3.36192 3.40228 3.42905 3.97184 4.31945 4.47610 4.50409 4.69191 4.86156 4.92447 4.99758 5.10392 5.17790 5.24603 5.36620 5.40290 5.40810 5.46239 5.47747 5.53054 5.61067 5.65776 5.72401 5.75400 5.78417 5.87827 5.91500 5.96382 5.98203 6.03758 6.04810 6.13039 6.18416 6.24462 6.26400 6.32551 6.35522 6.59808 6.88514 7.03994 7.17016 7.25017 7.34754 7.74800 7.91633 8.07075 8.49915 9.10818 9.66933 11.16907 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.033445 B = 0.002956 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.998422 B = 9468.465130 C = 9999.161437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.065 0.935 4 C -0.113 4.113 5 C -0.117 4.117 6 C -0.107 4.107 7 C 0.086 3.914 8 H 0.076 0.924 9 N -0.540 5.540 10 C 0.019 3.981 11 C 0.057 3.943 12 C -0.113 4.113 13 C -0.109 4.109 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.053 0.947 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.147 4.147 24 C -0.111 4.111 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.026 0.974 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.031 0.969 38 H 0.068 0.932 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.046 0.954 43 H 0.015 0.985 44 H 0.014 0.986 45 H 0.260 0.740 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.415 16.718 -14.672 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.083 0.917 4 C -0.151 4.151 5 C -0.155 4.155 6 C -0.145 4.145 7 C -0.022 4.022 8 H 0.094 0.906 9 N -0.263 5.263 10 C -0.130 4.130 11 C -0.070 4.070 12 C -0.151 4.151 13 C -0.147 4.147 14 C -0.015 4.015 15 C -0.559 4.559 16 H 0.071 0.929 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.186 4.186 24 C -0.149 4.149 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.044 0.956 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.049 0.951 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.034 0.966 44 H 0.032 0.968 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.085 0.915 48 H 0.076 0.924 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -12.991 16.322 -14.982 25.683 hybrid contribution -0.561 -0.083 1.493 1.598 sum -13.552 16.240 -13.488 25.086 Atomic orbital electron populations 1.21948 0.95556 1.01806 1.01434 1.20078 0.95480 0.99884 0.95281 0.91710 1.21415 0.95977 1.00864 0.96822 1.21356 0.94675 0.99238 1.00211 1.21946 0.98436 0.98965 0.95149 1.21540 0.91727 0.95604 0.93364 0.90584 1.62225 1.13899 1.21770 1.28404 1.22447 0.97078 0.93919 0.99506 1.22242 0.98789 0.95519 0.90490 1.21660 0.96207 0.98530 0.98713 1.21595 1.00597 0.97515 0.95001 1.19077 0.92126 0.94619 0.95689 1.21263 0.95556 1.25226 1.13814 0.92851 1.25031 0.95033 0.97035 0.97420 1.69958 1.01966 1.40509 1.41176 0.86677 0.77793 0.80542 0.83091 1.20259 1.21302 1.20301 1.22052 0.95655 1.00290 1.00578 1.20490 0.95553 1.01265 0.97601 0.92682 0.92913 0.92865 0.91510 0.92098 0.92279 0.92391 0.91802 0.91848 0.95561 0.90969 0.91847 0.95118 0.91320 0.91788 0.92638 0.93793 0.93551 0.96635 0.96791 0.93010 0.91660 0.91456 0.92444 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 8.97 37.15 0.33 -0.72 16 2 C -0.09 -0.69 2.22 -93.49 -0.21 -0.89 16 3 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 4 C -0.11 -0.87 4.97 -27.34 -0.14 -1.00 16 5 C -0.12 -0.92 5.34 -27.33 -0.15 -1.07 16 6 C -0.11 -1.03 5.39 -25.51 -0.14 -1.16 16 7 C 0.09 0.93 1.68 -68.41 -0.11 0.82 16 8 H 0.08 0.87 6.29 -51.93 -0.33 0.54 16 9 N -0.54 -7.09 4.65 -235.74 -1.10 -8.18 16 10 C 0.02 0.23 8.52 60.07 0.51 0.74 16 11 C 0.06 0.84 4.62 -3.82 -0.02 0.82 16 12 C -0.11 -2.01 5.14 -26.73 -0.14 -2.15 16 13 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 14 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16 15 C -0.52 -15.18 9.11 -34.44 -0.31 -15.50 16 16 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.62 13.29 55.43 0.74 -26.88 16 19 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.15 -1.46 3.81 -27.35 -0.10 -1.56 16 24 C -0.11 -0.98 4.44 -29.60 -0.13 -1.11 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.36 8.11 -51.93 -0.42 -0.06 16 27 H 0.05 0.34 8.12 -51.93 -0.42 -0.08 16 28 H 0.07 0.56 6.98 -51.93 -0.36 0.20 16 29 H 0.06 0.42 7.96 -51.93 -0.41 0.01 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.45 6.65 -51.93 -0.35 0.11 16 32 H 0.06 0.63 6.17 -51.93 -0.32 0.31 16 33 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 34 H 0.03 0.31 6.54 -51.93 -0.34 -0.03 16 35 H 0.07 0.95 6.58 -51.93 -0.34 0.61 16 36 H 0.06 0.68 6.28 -51.93 -0.33 0.35 16 37 H 0.03 0.45 6.81 -51.93 -0.35 0.10 16 38 H 0.07 1.00 7.85 -51.93 -0.41 0.60 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 40 H 0.05 0.99 6.60 -51.93 -0.34 0.65 16 41 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.06 0.63 6.99 -51.93 -0.36 0.26 16 47 H 0.07 0.76 5.42 -51.93 -0.28 0.48 16 48 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 49 H 0.06 0.57 7.46 -51.93 -0.39 0.19 16 LS Contribution 356.15 15.07 5.37 5.37 Total: -1.00 -29.98 356.15 -10.47 -40.45 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -9.49 Total: -4.57 kcal Atomic # 6 Polarization: -22.28 SS G_CDS: -0.97 Total: -23.26 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.36 Total: -35.06 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -29.98 -10.47 -40.45 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697864129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.745 kcal (2) G-P(sol) polarization free energy of solvation -29.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds