Wall clock time and date at job start Mon Mar 30 2020 07:58:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09003 * 108.87708 * 2 1 4 4 C 1.54243 * 108.89576 * 241.39645 * 2 1 3 5 5 C 1.50475 * 108.68095 * 159.16039 * 4 2 1 6 6 C 1.54266 * 112.38722 * 93.93587 * 5 4 2 7 7 C 1.54075 * 112.94838 * 318.57974 * 6 5 4 8 8 H 1.08997 * 108.87547 * 78.94750 * 7 6 5 9 9 N 1.46905 * 108.79284 * 197.44498 * 7 6 5 10 10 C 1.46904 * 110.99815 * 72.30876 * 9 7 6 11 11 C 1.46901 * 110.99599 * 196.25854 * 9 7 6 12 12 C 1.52997 * 109.47052 * 170.00224 * 11 9 7 13 13 C 1.53006 * 109.47145 * 179.97438 * 12 11 9 14 14 C 1.52997 * 109.47145 * 179.97438 * 13 12 11 15 15 C 1.50696 * 109.47167 * 179.97438 * 14 13 12 16 16 H 1.07994 * 119.99933 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99807 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00278 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99634 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47240 * 60.00208 * 19 17 15 21 21 H 1.48507 * 109.46860 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47032 * 300.00105 * 19 17 15 23 23 C 1.50469 * 112.49480 * 318.16682 * 7 6 5 24 24 C 1.45544 * 108.89425 * 118.51125 * 2 1 3 25 25 H 1.09000 * 109.47643 * 178.59962 * 1 2 3 26 26 H 1.09007 * 109.47082 * 298.60571 * 1 2 3 27 27 H 1.09005 * 109.46986 * 58.60135 * 1 2 3 28 28 H 1.09001 * 109.62652 * 278.96583 * 4 2 1 29 29 H 1.08998 * 109.63013 * 39.35409 * 4 2 1 30 30 H 1.08996 * 108.87679 * 215.02772 * 5 4 2 31 31 H 1.08994 * 108.87881 * 333.47446 * 5 4 2 32 32 H 1.08998 * 108.83567 * 197.61338 * 6 5 4 33 33 H 1.09008 * 108.57073 * 79.35345 * 6 5 4 34 34 H 1.09004 * 109.47190 * 66.31634 * 10 9 7 35 35 H 1.08996 * 109.47059 * 186.31199 * 10 9 7 36 36 H 1.08995 * 109.47114 * 306.31420 * 10 9 7 37 37 H 1.09002 * 109.47114 * 290.00610 * 11 9 7 38 38 H 1.08999 * 109.47177 * 49.99872 * 11 9 7 39 39 H 1.08993 * 109.46912 * 300.00280 * 12 11 9 40 40 H 1.09003 * 109.46798 * 60.00478 * 12 11 9 41 41 H 1.08998 * 109.47074 * 299.99962 * 13 12 11 42 42 H 1.08996 * 109.46554 * 60.00238 * 13 12 11 43 43 H 1.08997 * 109.47285 * 300.00706 * 14 13 12 44 44 H 1.09006 * 109.47015 * 59.99846 * 14 13 12 45 45 H 0.96996 * 120.00092 * 179.97438 * 18 17 15 46 46 H 1.09004 * 109.63125 * 334.44144 * 23 7 6 47 47 H 1.08995 * 109.62747 * 213.86438 * 23 7 6 48 48 H 1.09000 * 108.89446 * 303.44530 * 24 2 1 49 49 H 1.09002 * 108.89986 * 62.03232 * 24 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8826 1.0314 0.0000 4 6 2.0294 -0.6986 -1.2812 5 6 3.4459 -0.2652 -1.5455 6 6 4.4803 -1.2414 -0.9482 7 6 4.0934 -1.7407 0.4572 8 1 3.3433 -2.5254 0.3584 9 7 5.2862 -2.3029 1.1047 10 6 6.2239 -1.2410 1.4935 11 6 4.9169 -3.1288 2.2620 12 6 6.1468 -3.8926 2.7567 13 6 5.7623 -4.7524 3.9625 14 6 6.9921 -5.5167 4.4568 15 6 6.6136 -6.3630 5.6448 16 1 5.5974 -6.3568 6.0105 17 6 7.5644 -7.1461 6.2643 18 7 8.8017 -7.1541 5.8188 19 14 7.0949 -8.1958 7.7365 20 1 6.0384 -9.1608 7.3397 21 1 8.2887 -8.9375 8.2164 22 1 6.5848 -7.3229 8.8242 23 6 3.5393 -0.6439 1.3255 24 6 2.0012 -0.6573 1.2100 25 1 -0.3634 -1.0273 -0.0251 26 1 -0.3633 0.4921 0.9023 27 1 -0.3633 0.5354 -0.8772 28 1 1.9966 -1.7796 -1.1453 29 1 1.3970 -0.4160 -2.1227 30 1 3.5986 -0.1966 -2.6226 31 1 3.6012 0.7200 -1.1059 32 1 5.4456 -0.7386 -0.8892 33 1 4.5719 -2.1001 -1.6134 34 1 5.7746 -0.6276 2.2746 35 1 7.1447 -1.6885 1.8676 36 1 6.4480 -0.6190 0.6270 37 1 4.5413 -2.4886 3.0603 38 1 4.1421 -3.8377 1.9701 39 1 6.5223 -4.5327 1.9585 40 1 6.9215 -3.1836 3.0488 41 1 5.3871 -4.1119 4.7607 42 1 4.9875 -5.4613 3.6709 43 1 7.3670 -6.1572 3.6585 44 1 7.7674 -4.8080 4.7483 45 1 9.4706 -7.7047 6.2548 46 1 3.9233 0.3191 0.9888 47 1 3.8302 -0.8151 2.3618 48 1 1.5778 -0.1484 2.0759 49 1 1.6580 -1.6919 1.2064 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697864129.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:00 Heat of formation + Delta-G solvation = -54.141206 kcal Electronic energy + Delta-G solvation = -21038.092555 eV Core-core repulsion = 18190.707325 eV Total energy + Delta-G solvation = -2847.385229 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.89526 -38.22180 -36.26531 -34.50871 -33.62579 -32.13278 -30.16554 -28.25128 -27.63352 -26.06850 -24.78764 -23.90973 -22.21263 -21.54222 -21.08121 -19.70102 -18.43081 -17.13753 -16.60416 -16.57052 -16.30590 -15.96653 -15.40577 -15.06501 -14.65716 -14.53419 -14.30482 -13.88554 -13.78150 -13.63663 -13.54979 -13.22879 -13.07512 -12.83090 -12.70397 -12.59196 -12.55024 -12.33271 -12.19738 -11.96969 -11.69143 -11.67082 -11.39546 -11.33189 -11.28340 -11.22882 -11.16449 -11.04870 -10.86466 -10.55338 -9.13892 -8.19978 -6.31832 1.38945 1.42681 1.50640 2.40695 2.96573 3.12464 3.61398 3.80352 3.98122 4.03254 4.14750 4.17968 4.24451 4.32060 4.39978 4.44087 4.48785 4.56634 4.57439 4.60589 4.70550 4.77389 4.83593 4.87375 4.90095 4.91506 5.00737 5.05803 5.09144 5.11767 5.19000 5.21860 5.27847 5.29471 5.32175 5.34480 5.41541 5.44758 5.48783 5.54916 5.55968 5.63451 5.77366 5.86409 6.18616 6.24588 6.28975 6.85525 7.37461 8.91856 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.033445 B = 0.002956 C = 0.002800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.998422 B = 9468.465130 C = 9999.161437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.087 4.087 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.112 4.112 6 C -0.103 4.103 7 C 0.089 3.911 8 H 0.070 0.930 9 N -0.551 5.551 10 C 0.020 3.980 11 C 0.069 3.931 12 C -0.102 4.102 13 C -0.096 4.096 14 C 0.025 3.975 15 C -0.546 4.546 16 H 0.060 0.940 17 C -0.003 4.003 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.266 1.266 21 H -0.282 1.282 22 H -0.266 1.266 23 C -0.141 4.141 24 C -0.107 4.107 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.030 0.970 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.034 0.966 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.050 0.950 43 H -0.012 1.012 44 H -0.012 1.012 45 H 0.264 0.736 46 H 0.071 0.929 47 H 0.053 0.947 48 H 0.058 0.942 49 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.061 17.504 -14.800 27.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.141 4.141 7 C -0.019 4.019 8 H 0.088 0.912 9 N -0.274 5.274 10 C -0.128 4.128 11 C -0.059 4.059 12 C -0.140 4.140 13 C -0.134 4.134 14 C -0.013 4.013 15 C -0.584 4.584 16 H 0.078 0.922 17 C -0.200 4.200 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.180 4.180 24 C -0.145 4.145 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.052 0.948 38 H 0.089 0.911 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.652 17.122 -15.122 27.139 hybrid contribution -0.009 -0.319 1.495 1.529 sum -14.661 16.803 -13.626 26.134 Atomic orbital electron populations 1.21928 0.94931 1.01792 1.01933 1.20054 0.95994 0.99826 0.94694 0.91363 1.21405 0.96033 1.00285 0.97192 1.21321 0.94195 0.98745 1.00696 1.21916 0.98981 0.99102 0.94125 1.21576 0.90616 0.95692 0.94017 0.91216 1.62182 1.15154 1.22482 1.27590 1.22442 0.96238 0.93755 1.00364 1.22004 0.96933 0.95647 0.91339 1.21482 0.97618 0.98018 0.96912 1.21397 0.98030 0.97551 0.96429 1.18999 0.93710 0.93993 0.94549 1.21719 0.96066 1.25912 1.14734 0.92181 1.26033 0.94838 0.98407 1.00755 1.70100 1.03203 1.41418 1.42803 0.85481 0.77799 0.78687 0.78969 1.19070 1.20725 1.19085 1.21968 0.96471 1.00122 0.99394 1.20461 0.94625 1.01027 0.98378 0.92976 0.92816 0.91989 0.92389 0.90994 0.91305 0.91955 0.91993 0.92545 0.95135 0.92399 0.90197 0.94753 0.91057 0.92884 0.92998 0.93278 0.93121 0.99333 0.99341 0.92741 0.91003 0.92854 0.92291 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 8.97 71.98 0.65 -1.15 16 2 C -0.09 -1.18 2.22 -12.65 -0.03 -1.20 16 3 H 0.07 0.90 7.47 -2.39 -0.02 0.88 16 4 C -0.11 -1.48 4.97 30.20 0.15 -1.33 16 5 C -0.11 -1.52 5.34 30.21 0.16 -1.36 16 6 C -0.10 -1.83 5.39 31.39 0.17 -1.66 16 7 C 0.09 1.83 1.68 44.46 0.07 1.90 16 8 H 0.07 1.53 6.29 -2.39 -0.02 1.52 16 9 N -0.55 -14.07 4.65 -899.73 -4.18 -18.26 16 10 C 0.02 0.47 8.52 127.69 1.09 1.56 16 11 C 0.07 1.99 4.62 86.30 0.40 2.38 16 12 C -0.10 -3.68 5.14 30.60 0.16 -3.52 16 13 C -0.10 -4.11 5.15 30.60 0.16 -3.96 16 14 C 0.02 1.36 4.97 29.85 0.15 1.51 16 15 C -0.55 -32.25 9.11 25.60 0.23 -32.02 16 16 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 17 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 18 N -0.93 -58.60 13.29 21.45 0.28 -58.32 16 19 Si 0.97 45.19 29.54 68.60 2.03 47.22 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 21 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 23 C -0.14 -2.60 3.81 30.20 0.12 -2.49 16 24 C -0.11 -1.73 4.44 28.74 0.13 -1.60 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.05 0.64 8.11 -2.38 -0.02 0.62 16 27 H 0.06 0.64 8.12 -2.38 -0.02 0.62 16 28 H 0.06 0.89 6.98 -2.39 -0.02 0.87 16 29 H 0.07 0.82 7.96 -2.39 -0.02 0.80 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.82 6.65 -2.39 -0.02 0.80 16 32 H 0.06 1.12 6.17 -2.39 -0.01 1.11 16 33 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.03 0.69 6.54 -2.38 -0.02 0.67 16 35 H 0.06 1.52 6.58 -2.39 -0.02 1.50 16 36 H 0.08 1.60 6.28 -2.39 -0.02 1.58 16 37 H 0.03 0.98 6.81 -2.39 -0.02 0.96 16 38 H 0.07 2.03 7.85 -2.39 -0.02 2.01 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.89 6.60 -2.39 -0.02 1.87 16 41 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 43 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 44 H -0.01 -0.70 8.14 -2.38 -0.02 -0.72 16 45 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 46 H 0.07 1.24 6.99 -2.38 -0.02 1.22 16 47 H 0.05 1.15 5.42 -2.39 -0.01 1.13 16 48 H 0.06 0.94 8.08 -2.39 -0.02 0.92 16 49 H 0.05 0.96 7.46 -2.39 -0.02 0.94 16 Total: -1.00 -64.28 356.15 3.06 -61.22 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: 0.87 Total: 10.78 kcal Atomic # 6 Polarization: -46.71 SS G_CDS: 4.06 Total: -42.65 kcal Atomic # 7 Polarization: -72.68 SS G_CDS: -3.90 Total: -76.57 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.28 3.06 -61.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697864129.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.083 kcal (2) G-P(sol) polarization free energy of solvation -64.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds