Wall clock time and date at job start Mon Mar 30 2020 07:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 108.77178 * 2 1 4 4 C 1.50472 * 108.87803 * 118.51632 * 2 1 3 5 5 C 1.54238 * 108.52299 * 214.92323 * 4 2 1 6 6 C 1.45537 * 112.40701 * 280.01760 * 5 4 2 7 7 C 1.54234 * 112.41180 * 61.93490 * 6 5 4 8 8 H 1.08999 * 109.63278 * 39.91362 * 7 6 5 9 9 N 1.46895 * 109.63297 * 160.30549 * 7 6 5 10 10 C 1.46901 * 111.00352 * 58.56381 * 9 7 6 11 11 C 1.46907 * 110.99950 * 294.60989 * 9 7 6 12 12 C 1.52997 * 109.47483 * 190.00018 * 11 9 7 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.50475 * 108.68186 * 280.11128 * 7 6 5 24 24 C 1.53813 * 112.64329 * 93.88773 * 23 7 6 25 25 H 1.09005 * 109.46508 * 301.48769 * 1 2 3 26 26 H 1.09000 * 109.47211 * 61.48318 * 1 2 3 27 27 H 1.08997 * 109.47086 * 181.49051 * 1 2 3 28 28 H 1.09000 * 109.62700 * 95.21237 * 4 2 1 29 29 H 1.08997 * 109.79080 * 334.72743 * 4 2 1 30 30 H 1.08996 * 108.89696 * 159.25639 * 5 4 2 31 31 H 1.09002 * 108.81564 * 40.71525 * 5 4 2 32 32 H 1.09002 * 108.89643 * 301.17703 * 6 5 4 33 33 H 1.09002 * 108.82056 * 182.64010 * 6 5 4 34 34 H 1.08997 * 109.47053 * 296.05150 * 10 9 7 35 35 H 1.09001 * 109.47171 * 56.04729 * 10 9 7 36 36 H 1.08997 * 109.47062 * 176.04779 * 10 9 7 37 37 H 1.09002 * 109.46929 * 69.99877 * 11 9 7 38 38 H 1.09001 * 109.46786 * 310.00238 * 11 9 7 39 39 H 1.09002 * 109.47153 * 59.99996 * 12 11 9 40 40 H 1.09001 * 109.46832 * 300.00187 * 12 11 9 41 41 H 1.09002 * 109.47103 * 59.99753 * 13 12 11 42 42 H 1.08998 * 109.46862 * 300.00565 * 13 12 11 43 43 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 44 44 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 45 45 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 46 46 H 1.08994 * 108.88178 * 214.83429 * 23 7 6 47 47 H 1.09001 * 108.87634 * 333.27514 * 23 7 6 48 48 H 1.09001 * 108.89943 * 197.61494 * 24 23 7 49 49 H 1.08996 * 108.57118 * 79.31284 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8808 1.0320 0.0000 4 6 2.0169 -0.6797 1.2510 5 6 3.3101 0.0198 1.7172 6 6 4.4788 -0.4189 0.9691 7 6 4.3714 -0.0918 -0.5343 8 1 3.9264 0.8948 -0.6636 9 7 5.7092 -0.1130 -1.1408 10 6 6.3477 -1.4238 -0.9620 11 6 6.5509 0.9612 -0.5967 12 6 7.8369 1.0674 -1.4188 13 6 8.7137 2.1856 -0.8519 14 6 10.0000 2.2915 -1.6736 15 6 10.8634 3.3933 -1.1154 16 1 10.5284 3.9611 -0.2599 17 6 12.0815 3.6760 -1.6964 18 7 12.4896 2.9843 -2.7378 19 14 13.1520 5.0413 -1.0041 20 1 12.4710 5.6621 0.1604 21 1 14.4557 4.4769 -0.5714 22 1 13.3806 6.0698 -2.0505 23 6 3.5018 -1.1286 -1.1923 24 6 2.0284 -0.6959 -1.2811 25 1 -0.3632 0.5368 0.8764 26 1 -0.3633 0.4906 -0.9030 27 1 -0.3633 -1.0273 0.0267 28 1 2.2236 -1.7291 1.0408 29 1 1.2588 -0.6050 2.0306 30 1 3.4664 -0.1952 2.7743 31 1 3.1931 1.0960 1.5899 32 1 4.5904 -1.4966 1.0887 33 1 5.3619 0.0742 1.3754 34 1 6.5067 -1.6086 0.1004 35 1 5.7035 -2.2009 -1.3734 36 1 7.3065 -1.4346 -1.4802 37 1 6.8002 0.7373 0.4405 38 1 6.0099 1.9062 -0.6446 39 1 7.5876 1.2913 -2.4561 40 1 8.3778 0.1223 -1.3709 41 1 8.9630 1.9614 0.1853 42 1 8.1730 3.1308 -0.8993 43 1 9.7511 2.5155 -2.7109 44 1 10.5406 1.3461 -1.6256 45 1 13.3464 3.1834 -3.1467 46 1 3.8765 -1.3163 -2.1985 47 1 3.5599 -2.0534 -0.6183 48 1 1.4124 -1.5760 -1.4653 49 1 1.9184 -0.0086 -2.1199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000697864130.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:03 Heat of formation + Delta-G solvation = -41.029642 kcal Electronic energy + Delta-G solvation = -21017.593422 eV Core-core repulsion = 18170.776752 eV Total energy + Delta-G solvation = -2846.816669 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.04847 -37.10100 -34.52605 -33.15220 -32.50451 -31.27398 -28.47740 -27.48309 -26.15440 -25.12707 -23.55835 -22.57866 -21.19722 -20.22419 -19.89776 -18.79961 -16.27068 -16.03456 -15.57338 -15.22735 -15.16451 -14.49295 -14.46566 -14.15849 -13.75775 -13.49131 -13.24804 -12.89723 -12.65774 -12.45929 -12.21071 -12.00146 -11.73926 -11.63658 -11.55073 -11.35874 -11.07421 -10.95751 -10.90288 -10.78831 -10.58220 -10.44943 -10.43310 -10.36142 -10.29562 -10.21771 -9.55479 -9.21030 -8.95069 -8.30130 -8.11261 -5.95015 -3.96930 3.33576 3.40748 3.45178 4.03675 4.35218 4.45223 4.50167 4.62795 4.86962 4.87974 5.01879 5.16440 5.20035 5.21784 5.35284 5.39434 5.40500 5.43870 5.47429 5.53360 5.63992 5.67208 5.69987 5.76245 5.83157 5.88645 5.93401 5.97348 5.99572 6.05036 6.08276 6.11757 6.17682 6.23358 6.25884 6.28826 6.36132 6.59624 6.88305 7.03814 7.16761 7.24603 7.34469 7.75079 7.91356 8.06718 8.49701 9.10939 9.66767 11.16427 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037908 B = 0.002857 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.445375 B = 9799.720912 C =10034.487026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 H 0.068 0.932 4 C -0.112 4.112 5 C -0.113 4.113 6 C -0.152 4.152 7 C 0.089 3.911 8 H 0.082 0.918 9 N -0.535 5.535 10 C 0.018 3.982 11 C 0.055 3.945 12 C -0.113 4.113 13 C -0.109 4.109 14 C 0.021 3.979 15 C -0.518 4.518 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.112 4.112 24 C -0.108 4.108 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.025 0.975 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.032 0.968 38 H 0.069 0.931 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.043 0.957 42 H 0.046 0.954 43 H 0.015 0.985 44 H 0.014 0.986 45 H 0.259 0.741 46 H 0.073 0.927 47 H 0.055 0.945 48 H 0.058 0.942 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.332 -9.808 6.339 26.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.151 4.151 6 C -0.191 4.191 7 C -0.020 4.020 8 H 0.100 0.900 9 N -0.257 5.257 10 C -0.130 4.130 11 C -0.072 4.072 12 C -0.151 4.151 13 C -0.147 4.147 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.210 1.210 23 C -0.149 4.149 24 C -0.146 4.146 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.043 0.957 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.050 0.950 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.062 0.938 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.032 0.968 45 H 0.069 0.931 46 H 0.091 0.909 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.234 -9.742 5.700 25.830 hybrid contribution 0.840 0.582 1.229 1.598 sum -22.394 -9.160 6.929 25.167 Atomic orbital electron populations 1.21952 0.95593 1.01521 1.01505 1.20978 0.95239 1.00188 0.94785 0.91330 1.21423 0.96821 0.99938 0.96774 1.20401 0.94825 1.00484 0.99390 1.21177 0.98882 1.01608 0.97424 1.21471 0.89804 0.99899 0.90821 0.90001 1.62405 1.02353 1.03979 1.56956 1.22436 1.00115 0.90998 0.99447 1.22252 0.94632 0.93837 0.96524 1.21663 0.93884 0.99847 0.99737 1.21591 0.97643 0.96023 0.99439 1.19090 0.90692 0.96746 0.95068 1.21335 1.02727 1.17373 1.14228 0.92752 1.25038 0.97940 0.96539 0.95078 1.69980 1.20910 1.40596 1.22106 0.86563 0.80450 0.82139 0.79011 1.19778 1.21063 1.21024 1.21361 0.93972 0.97977 1.01638 1.21882 0.95459 1.00165 0.97081 0.92848 0.92870 0.92887 0.91802 0.92050 0.92587 0.92178 0.92245 0.91862 0.95685 0.91824 0.90947 0.94974 0.91283 0.91781 0.92627 0.93802 0.93538 0.96622 0.96779 0.93130 0.90851 0.92624 0.92280 0.92161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.79 37.16 0.33 -0.68 16 2 C -0.09 -0.73 2.21 -91.32 -0.20 -0.93 16 3 H 0.07 0.59 6.64 -51.93 -0.34 0.24 16 4 C -0.11 -0.87 5.13 -27.35 -0.14 -1.01 16 5 C -0.11 -0.99 5.27 -29.60 -0.16 -1.14 16 6 C -0.15 -1.53 3.58 -29.60 -0.11 -1.64 16 7 C 0.09 0.96 1.89 -68.33 -0.13 0.83 16 8 H 0.08 0.94 6.89 -51.93 -0.36 0.58 16 9 N -0.53 -7.00 4.63 -235.63 -1.09 -8.09 16 10 C 0.02 0.22 8.60 60.07 0.52 0.74 16 11 C 0.05 0.81 4.48 -3.82 -0.02 0.79 16 12 C -0.11 -2.01 5.14 -26.74 -0.14 -2.15 16 13 C -0.11 -2.31 5.15 -26.74 -0.14 -2.44 16 14 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 15 C -0.52 -15.10 9.11 -34.44 -0.31 -15.42 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.14 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.58 13.29 55.43 0.74 -26.85 16 19 Si 0.89 22.08 29.54 -169.99 -5.02 17.05 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 C -0.11 -1.06 3.68 -27.57 -0.10 -1.16 16 24 C -0.11 -0.88 5.22 -25.75 -0.13 -1.02 16 25 H 0.05 0.34 8.08 -51.93 -0.42 -0.08 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.51 6.99 -51.93 -0.36 0.15 16 29 H 0.06 0.44 7.68 -51.93 -0.40 0.04 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.54 7.47 -51.93 -0.39 0.15 16 32 H 0.06 0.60 6.93 -51.93 -0.36 0.24 16 33 H 0.06 0.73 6.06 -51.93 -0.31 0.41 16 34 H 0.02 0.30 6.95 -51.93 -0.36 -0.07 16 35 H 0.06 0.68 6.76 -51.93 -0.35 0.33 16 36 H 0.07 0.95 6.47 -51.93 -0.34 0.62 16 37 H 0.03 0.47 6.55 -51.93 -0.34 0.13 16 38 H 0.07 1.01 8.00 -51.93 -0.42 0.59 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 0.99 6.55 -51.93 -0.34 0.65 16 41 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 46 H 0.07 0.77 7.63 -51.93 -0.40 0.37 16 47 H 0.06 0.51 6.57 -51.93 -0.34 0.16 16 48 H 0.06 0.44 7.98 -51.93 -0.41 0.03 16 49 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -29.97 356.99 -10.55 -40.52 By element: Atomic # 1 Polarization: 4.85 SS G_CDS: -9.59 Total: -4.74 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -0.97 Total: -23.28 kcal Atomic # 7 Polarization: -34.59 SS G_CDS: -0.35 Total: -34.94 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.97 -10.55 -40.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697864130.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.507 kcal (2) G-P(sol) polarization free energy of solvation -29.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds