Wall clock time and date at job start Mon Mar 30 2020 07:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 108.77178 * 2 1 4 4 C 1.50472 * 108.87803 * 118.51632 * 2 1 3 5 5 C 1.54238 * 108.52299 * 214.92323 * 4 2 1 6 6 C 1.45537 * 112.40701 * 280.01760 * 5 4 2 7 7 C 1.54234 * 112.41180 * 61.93490 * 6 5 4 8 8 H 1.08999 * 109.63278 * 39.91362 * 7 6 5 9 9 N 1.46895 * 109.63297 * 160.30549 * 7 6 5 10 10 C 1.46901 * 111.00352 * 58.56381 * 9 7 6 11 11 C 1.46907 * 110.99950 * 294.60989 * 9 7 6 12 12 C 1.52997 * 109.47483 * 190.00018 * 11 9 7 13 13 C 1.52992 * 109.47482 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47482 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.50475 * 108.68186 * 280.11128 * 7 6 5 24 24 C 1.53813 * 112.64329 * 93.88773 * 23 7 6 25 25 H 1.09005 * 109.46508 * 301.48769 * 1 2 3 26 26 H 1.09000 * 109.47211 * 61.48318 * 1 2 3 27 27 H 1.08997 * 109.47086 * 181.49051 * 1 2 3 28 28 H 1.09000 * 109.62700 * 95.21237 * 4 2 1 29 29 H 1.08997 * 109.79080 * 334.72743 * 4 2 1 30 30 H 1.08996 * 108.89696 * 159.25639 * 5 4 2 31 31 H 1.09002 * 108.81564 * 40.71525 * 5 4 2 32 32 H 1.09002 * 108.89643 * 301.17703 * 6 5 4 33 33 H 1.09002 * 108.82056 * 182.64010 * 6 5 4 34 34 H 1.08997 * 109.47053 * 296.05150 * 10 9 7 35 35 H 1.09001 * 109.47171 * 56.04729 * 10 9 7 36 36 H 1.08997 * 109.47062 * 176.04779 * 10 9 7 37 37 H 1.09002 * 109.46929 * 69.99877 * 11 9 7 38 38 H 1.09001 * 109.46786 * 310.00238 * 11 9 7 39 39 H 1.09002 * 109.47153 * 59.99996 * 12 11 9 40 40 H 1.09001 * 109.46832 * 300.00187 * 12 11 9 41 41 H 1.09002 * 109.47103 * 59.99753 * 13 12 11 42 42 H 1.08998 * 109.46862 * 300.00565 * 13 12 11 43 43 H 1.09002 * 109.47153 * 59.99783 * 14 13 12 44 44 H 1.09001 * 109.46832 * 299.99974 * 14 13 12 45 45 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 46 46 H 1.08994 * 108.88178 * 214.83429 * 23 7 6 47 47 H 1.09001 * 108.87634 * 333.27514 * 23 7 6 48 48 H 1.09001 * 108.89943 * 197.61494 * 24 23 7 49 49 H 1.08996 * 108.57118 * 79.31284 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8808 1.0320 0.0000 4 6 2.0169 -0.6797 1.2510 5 6 3.3101 0.0198 1.7172 6 6 4.4788 -0.4189 0.9691 7 6 4.3714 -0.0918 -0.5343 8 1 3.9264 0.8948 -0.6636 9 7 5.7092 -0.1130 -1.1408 10 6 6.3477 -1.4238 -0.9620 11 6 6.5509 0.9612 -0.5967 12 6 7.8369 1.0674 -1.4188 13 6 8.7137 2.1856 -0.8519 14 6 10.0000 2.2915 -1.6736 15 6 10.8634 3.3933 -1.1154 16 1 10.5284 3.9611 -0.2599 17 6 12.0815 3.6760 -1.6964 18 7 12.4896 2.9843 -2.7378 19 14 13.1520 5.0413 -1.0041 20 1 12.4710 5.6621 0.1604 21 1 14.4557 4.4769 -0.5714 22 1 13.3806 6.0698 -2.0505 23 6 3.5018 -1.1286 -1.1923 24 6 2.0284 -0.6959 -1.2811 25 1 -0.3632 0.5368 0.8764 26 1 -0.3633 0.4906 -0.9030 27 1 -0.3633 -1.0273 0.0267 28 1 2.2236 -1.7291 1.0408 29 1 1.2588 -0.6050 2.0306 30 1 3.4664 -0.1952 2.7743 31 1 3.1931 1.0960 1.5899 32 1 4.5904 -1.4966 1.0887 33 1 5.3619 0.0742 1.3754 34 1 6.5067 -1.6086 0.1004 35 1 5.7035 -2.2009 -1.3734 36 1 7.3065 -1.4346 -1.4802 37 1 6.8002 0.7373 0.4405 38 1 6.0099 1.9062 -0.6446 39 1 7.5876 1.2913 -2.4561 40 1 8.3778 0.1223 -1.3709 41 1 8.9630 1.9614 0.1853 42 1 8.1730 3.1308 -0.8993 43 1 9.7511 2.5155 -2.7109 44 1 10.5406 1.3461 -1.6256 45 1 13.3464 3.1834 -3.1467 46 1 3.8765 -1.3163 -2.1985 47 1 3.5599 -2.0534 -0.6183 48 1 1.4124 -1.5760 -1.4653 49 1 1.9184 -0.0086 -2.1199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000697864130.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:58:02 Heat of formation + Delta-G solvation = -56.401508 kcal Electronic energy + Delta-G solvation = -21018.259996 eV Core-core repulsion = 18170.776752 eV Total energy + Delta-G solvation = -2847.483244 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.88346 -38.08707 -36.21988 -34.45489 -33.75334 -32.45598 -30.09739 -28.25467 -27.35744 -26.33283 -24.87544 -23.42525 -22.51110 -21.70840 -20.99653 -19.56370 -18.43503 -17.06763 -16.59575 -16.55663 -16.23132 -15.84995 -15.53874 -15.20687 -14.77553 -14.58303 -14.23978 -13.99187 -13.73077 -13.66330 -13.49799 -13.25017 -13.08764 -12.87421 -12.69319 -12.56095 -12.37864 -12.30162 -12.12175 -11.96791 -11.77411 -11.72189 -11.49284 -11.32327 -11.25220 -11.21864 -11.09055 -11.04719 -10.88263 -10.56468 -9.13873 -8.20360 -6.31874 1.39022 1.39650 1.53213 2.40501 3.00855 3.12290 3.62612 3.72840 3.98214 4.06871 4.16308 4.16363 4.22186 4.29729 4.44887 4.47082 4.48219 4.53980 4.58711 4.62028 4.69895 4.80099 4.81272 4.86704 4.90571 4.92221 5.00242 5.09685 5.13439 5.16037 5.18797 5.22692 5.27012 5.29510 5.32017 5.33517 5.40996 5.42742 5.48407 5.53330 5.55402 5.64173 5.77446 5.86526 6.18226 6.24597 6.29006 6.85792 7.37451 8.91868 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.037908 B = 0.002857 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.445375 B = 9799.720912 C =10034.487026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.059 0.941 4 C -0.107 4.107 5 C -0.113 4.113 6 C -0.144 4.144 7 C 0.090 3.910 8 H 0.076 0.924 9 N -0.545 5.545 10 C 0.020 3.980 11 C 0.066 3.934 12 C -0.103 4.103 13 C -0.096 4.096 14 C 0.024 3.976 15 C -0.543 4.543 16 H 0.059 0.941 17 C -0.004 4.004 18 N -0.935 5.935 19 Si 0.967 3.033 20 H -0.261 1.261 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.107 4.107 24 C -0.105 4.105 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.048 0.952 34 H 0.029 0.971 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.048 0.952 42 H 0.050 0.950 43 H -0.011 1.011 44 H -0.011 1.011 45 H 0.264 0.736 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.572 -9.680 7.644 27.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.077 0.923 4 C -0.145 4.145 5 C -0.151 4.151 6 C -0.183 4.183 7 C -0.018 4.018 8 H 0.094 0.906 9 N -0.268 5.268 10 C -0.128 4.128 11 C -0.061 4.061 12 C -0.141 4.141 13 C -0.134 4.134 14 C -0.013 4.013 15 C -0.581 4.581 16 H 0.078 0.922 17 C -0.201 4.201 18 N -0.575 5.575 19 Si 0.791 3.209 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.203 1.203 23 C -0.144 4.144 24 C -0.143 4.143 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.047 0.953 35 H 0.098 0.902 36 H 0.076 0.924 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.007 0.993 44 H 0.007 0.993 45 H 0.072 0.928 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -24.495 -9.621 7.012 27.235 hybrid contribution 1.223 0.507 0.782 1.537 sum -23.272 -9.114 7.793 26.180 Atomic orbital electron populations 1.21927 0.94660 1.01997 1.01754 1.20955 0.96019 0.99544 0.94568 0.92268 1.21390 0.96409 0.99733 0.96942 1.20387 0.94822 1.00344 0.99503 1.21103 0.98900 1.01594 0.96713 1.21498 0.88582 1.00181 0.91506 0.90620 1.62360 1.03065 1.03882 1.57463 1.22431 0.99779 0.90983 0.99630 1.22017 0.93353 0.94815 0.95954 1.21485 0.94914 0.98217 0.99439 1.21393 0.95629 0.97637 0.98736 1.19013 0.92906 0.94954 0.94463 1.21766 1.03597 1.18133 1.14630 0.92226 1.26035 0.99525 0.99267 0.95290 1.70115 1.21618 1.42365 1.23441 0.85372 0.78297 0.78617 0.78595 1.18532 1.20269 1.20255 1.21305 0.94469 0.97749 1.00910 1.21855 0.94632 1.00537 0.97230 0.92435 0.92847 0.92284 0.91672 0.91090 0.92069 0.92581 0.91941 0.93322 0.95275 0.90186 0.92358 0.94606 0.91030 0.92853 0.92969 0.93304 0.93115 0.99298 0.99310 0.92760 0.91840 0.91925 0.91236 0.92623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.79 71.98 0.63 -1.04 16 2 C -0.09 -1.27 2.21 -11.25 -0.02 -1.29 16 3 H 0.06 0.93 6.64 -2.39 -0.02 0.92 16 4 C -0.11 -1.43 5.13 30.20 0.15 -1.27 16 5 C -0.11 -1.78 5.27 28.73 0.15 -1.63 16 6 C -0.14 -2.70 3.58 28.73 0.10 -2.60 16 7 C 0.09 1.86 1.89 44.52 0.08 1.95 16 8 H 0.08 1.67 6.89 -2.39 -0.02 1.65 16 9 N -0.55 -13.89 4.63 -899.41 -4.16 -18.06 16 10 C 0.02 0.46 8.60 127.69 1.10 1.56 16 11 C 0.07 1.92 4.48 86.30 0.39 2.31 16 12 C -0.10 -3.68 5.14 30.59 0.16 -3.52 16 13 C -0.10 -4.10 5.15 30.59 0.16 -3.95 16 14 C 0.02 1.31 4.97 29.85 0.15 1.46 16 15 C -0.54 -32.03 9.11 25.60 0.23 -31.80 16 16 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 17 C 0.00 -0.22 5.46 84.66 0.46 0.24 16 18 N -0.93 -58.52 13.29 21.45 0.28 -58.23 16 19 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 20 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 21 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 C -0.11 -1.85 3.68 30.05 0.11 -1.74 16 24 C -0.10 -1.53 5.22 31.23 0.16 -1.37 16 25 H 0.06 0.62 8.08 -2.38 -0.02 0.60 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.87 6.99 -2.39 -0.02 0.85 16 29 H 0.07 0.83 7.68 -2.39 -0.02 0.81 16 30 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.94 7.47 -2.39 -0.02 0.92 16 32 H 0.06 1.14 6.93 -2.39 -0.02 1.12 16 33 H 0.05 1.06 6.06 -2.39 -0.01 1.04 16 34 H 0.03 0.66 6.95 -2.39 -0.02 0.64 16 35 H 0.08 1.60 6.76 -2.39 -0.02 1.58 16 36 H 0.06 1.53 6.47 -2.39 -0.02 1.51 16 37 H 0.04 1.02 6.55 -2.39 -0.02 1.00 16 38 H 0.07 2.03 8.00 -2.39 -0.02 2.02 16 39 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.05 1.89 6.55 -2.39 -0.02 1.88 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 43 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 44 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 45 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 46 H 0.06 1.25 7.63 -2.39 -0.02 1.23 16 47 H 0.06 1.01 6.57 -2.39 -0.02 0.99 16 48 H 0.07 0.89 7.98 -2.39 -0.02 0.87 16 49 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 Total: -1.00 -64.21 356.99 3.03 -61.18 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.87 Total: 10.55 kcal Atomic # 6 Polarization: -46.72 SS G_CDS: 4.02 Total: -42.70 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -3.88 Total: -76.29 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Total: -64.21 3.03 -61.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000697864130.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.777 kcal (2) G-P(sol) polarization free energy of solvation -64.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds