Wall clock time and date at job start Mon Mar 30 2020 07:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47072 * 2 1 4 4 H 1.08996 * 109.47473 * 183.50389 * 3 2 1 5 5 C 1.50697 * 109.47416 * 63.50050 * 3 2 1 6 6 H 1.08004 * 120.00123 * 244.92264 * 5 3 2 7 7 C 1.37880 * 119.99988 * 64.91985 * 5 3 2 8 8 N 1.31514 * 120.00029 * 4.27151 * 7 5 3 9 9 Si 1.86801 * 120.00055 * 184.26610 * 7 5 3 10 10 H 1.48500 * 109.47178 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.47033 * 120.00273 * 9 7 5 12 12 H 1.48505 * 109.47008 * 240.00124 * 9 7 5 13 13 N 1.46908 * 109.47167 * 303.50014 * 3 2 1 14 14 C 1.47630 * 110.99677 * 299.82484 * 13 3 2 15 15 C 1.50826 * 108.05322 * 150.34590 * 14 13 3 16 16 C 1.53822 * 111.62322 * 95.05175 * 15 14 13 17 17 C 1.53000 * 108.97967 * 198.40459 * 16 15 14 18 18 C 1.53003 * 108.97769 * 79.68922 * 16 15 14 19 19 C 1.54164 * 111.96864 * 319.04867 * 16 15 14 20 20 C 1.50759 * 112.61262 * 318.48380 * 19 16 15 21 21 C 1.53001 * 109.54468 * 333.15999 * 20 19 16 22 22 C 1.52997 * 109.54776 * 212.88554 * 20 19 16 23 23 C 1.39767 * 111.00001 * 170.92956 * 13 3 2 24 24 H 1.08996 * 109.47381 * 304.70386 * 1 2 3 25 25 H 1.08996 * 109.46986 * 64.70905 * 1 2 3 26 26 H 1.08998 * 109.46530 * 184.70368 * 1 2 3 27 27 H 1.08996 * 109.47361 * 239.99417 * 2 1 3 28 28 H 1.08998 * 109.47267 * 119.99666 * 2 1 3 29 29 H 0.97005 * 119.99498 * 2.80081 * 8 7 5 30 30 H 1.09000 * 109.74657 * 269.98142 * 14 13 3 31 31 H 1.09000 * 109.75222 * 30.70835 * 14 13 3 32 32 H 1.09006 * 109.04228 * 334.50137 * 15 14 13 33 33 H 1.08994 * 109.05077 * 215.61163 * 15 14 13 34 34 H 1.08997 * 109.46929 * 142.52901 * 17 16 15 35 35 H 1.09005 * 109.46733 * 262.52184 * 17 16 15 36 36 H 1.09000 * 109.47251 * 22.52601 * 17 16 15 37 37 H 1.09001 * 109.46675 * 297.53779 * 18 16 15 38 38 H 1.08999 * 109.47300 * 57.53781 * 18 16 15 39 39 H 1.08997 * 109.46973 * 177.54362 * 18 16 15 40 40 H 1.09006 * 108.85185 * 197.68159 * 19 16 15 41 41 H 1.08998 * 108.77567 * 79.23985 * 19 16 15 42 42 H 1.09002 * 109.46995 * 214.97054 * 21 20 19 43 43 H 1.09005 * 109.46728 * 334.96410 * 21 20 19 44 44 H 1.08993 * 109.47296 * 94.96517 * 21 20 19 45 45 H 1.08999 * 109.47086 * 300.45725 * 22 20 19 46 46 H 1.09005 * 109.46977 * 60.45216 * 22 20 19 47 47 H 1.08995 * 109.47320 * 180.45187 * 22 20 19 48 48 H 1.08997 * 109.03104 * 309.71819 * 23 13 3 49 49 H 1.09005 * 109.02186 * 68.54277 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1282 1.4432 -0.0628 5 6 1.6098 2.1274 1.2715 6 1 0.9210 2.9583 1.2309 7 6 2.0955 1.6934 2.4867 8 7 2.9977 0.7376 2.5308 9 14 1.4720 2.4630 4.0705 10 1 0.4671 3.5085 3.7507 11 1 0.8444 1.4160 4.9160 12 1 2.6086 3.0760 4.8039 13 7 1.4825 2.1590 -1.1550 14 6 1.8875 1.5173 -2.4214 15 6 0.8003 1.7618 -3.4378 16 6 1.1048 2.9928 -4.3085 17 6 -0.1888 3.4609 -4.9781 18 6 2.1097 2.5990 -5.3929 19 6 1.6897 4.1543 -3.4806 20 6 0.9952 4.3279 -2.1539 21 6 -0.4404 3.8085 -2.2558 22 6 0.9795 5.8100 -1.7743 23 6 1.7591 3.5268 -1.0771 24 1 -0.3634 0.5851 0.8448 25 1 -0.3633 0.4390 -0.9291 26 1 -0.3632 -1.0242 0.0843 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.3514 0.3661 1.7074 30 1 2.8236 1.9522 -2.7717 31 1 2.0134 0.4456 -2.2675 32 1 -0.1444 1.9190 -2.9172 33 1 0.7098 0.8855 -4.0796 34 1 -0.2052 4.5501 -5.0151 35 1 -0.2383 3.0621 -5.9914 36 1 -1.0445 3.1039 -4.4049 37 1 3.0431 2.2844 -4.9262 38 1 1.7038 1.7776 -5.9834 39 1 2.2981 3.4544 -6.0416 40 1 1.5934 5.0776 -4.0521 41 1 2.7472 3.9599 -3.3019 42 1 -1.0944 4.4248 -1.6390 43 1 -0.7705 3.8544 -3.2937 44 1 -0.4789 2.7764 -1.9076 45 1 2.0030 6.1784 -1.7063 46 1 0.4400 6.3742 -2.5351 47 1 0.4842 5.9331 -0.8112 48 1 1.4709 3.8921 -0.0914 49 1 2.8297 3.6810 -1.2124 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699703725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:59 Heat of formation + Delta-G solvation = 19.621322 kcal Electronic energy + Delta-G solvation = -23508.527468 eV Core-core repulsion = 20664.340822 eV Total energy + Delta-G solvation = -2844.186646 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47317 -36.73074 -34.47436 -33.00093 -30.85472 -29.35622 -28.46076 -26.53188 -26.04965 -25.53094 -24.71223 -22.83552 -21.78138 -19.28132 -18.58258 -17.88730 -16.69094 -15.73544 -15.10176 -14.61946 -14.45005 -14.30492 -13.70627 -13.38052 -13.19509 -12.58956 -12.51761 -12.44726 -12.24241 -12.13599 -11.93842 -11.86280 -11.56050 -11.26288 -11.14449 -10.97290 -10.79271 -10.70180 -10.43931 -10.31538 -10.23050 -10.10880 -10.00681 -9.91280 -9.77123 -9.56506 -9.33643 -9.17218 -8.37825 -8.28547 -6.97974 -6.29303 -4.00478 3.45622 3.48363 3.61812 4.53334 4.78771 4.96765 4.98161 5.11542 5.34503 5.39517 5.42978 5.52949 5.66182 5.72976 5.83738 5.83930 5.93479 5.97264 6.01922 6.09504 6.10399 6.14388 6.17041 6.25238 6.30466 6.35927 6.39162 6.42992 6.47184 6.52611 6.54677 6.58470 6.66083 6.75193 6.80216 6.86058 6.98647 7.04905 7.21610 7.24780 7.28013 7.50005 7.55280 8.03620 8.23151 8.66007 8.68334 8.93097 9.69300 11.06316 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.024052 B = 0.006756 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.862611 B = 4143.502780 C = 4675.228111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.115 4.115 3 C 0.210 3.790 4 H -0.015 1.015 5 C -0.579 4.579 6 H 0.059 0.941 7 C 0.020 3.980 8 N -0.916 5.916 9 Si 1.068 2.932 10 H -0.289 1.289 11 H -0.288 1.288 12 H -0.290 1.290 13 N -0.534 5.534 14 C 0.058 3.942 15 C -0.126 4.126 16 C -0.059 4.059 17 C -0.147 4.147 18 C -0.140 4.140 19 C -0.094 4.094 20 C -0.062 4.062 21 C -0.186 4.186 22 C -0.134 4.134 23 C 0.093 3.907 24 H 0.061 0.939 25 H 0.045 0.955 26 H 0.017 0.983 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.270 0.730 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.101 0.899 33 H 0.046 0.954 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.071 0.929 37 H 0.051 0.949 38 H 0.051 0.949 39 H 0.047 0.953 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.033 0.967 43 H 0.077 0.923 44 H 0.098 0.902 45 H 0.046 0.954 46 H 0.047 0.953 47 H 0.055 0.945 48 H 0.091 0.909 49 H -0.003 1.003 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.742 4.914 -13.106 14.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.153 4.153 3 C 0.104 3.896 4 H 0.003 0.997 5 C -0.618 4.618 6 H 0.077 0.923 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.898 3.102 10 H -0.215 1.215 11 H -0.214 1.214 12 H -0.217 1.217 13 N -0.258 5.258 14 C -0.069 4.069 15 C -0.163 4.163 16 C -0.059 4.059 17 C -0.203 4.203 18 C -0.197 4.197 19 C -0.132 4.132 20 C -0.062 4.062 21 C -0.241 4.241 22 C -0.192 4.192 23 C -0.037 4.037 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.036 0.964 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.086 0.914 32 H 0.118 0.882 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.090 0.910 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.095 0.905 44 H 0.117 0.883 45 H 0.066 0.934 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.109 0.891 49 H 0.015 0.985 Dipole moment (debyes) X Y Z Total from point charges -5.072 4.818 -11.434 13.405 hybrid contribution 0.991 0.191 -1.710 1.985 sum -4.081 5.010 -13.144 14.647 Atomic orbital electron populations 1.21420 0.96383 0.97839 1.01928 1.21656 0.96373 0.98429 0.98871 1.19298 0.91473 0.90629 0.88207 0.99714 1.21960 1.29990 1.18455 0.91355 0.92264 1.25669 0.95050 0.95828 1.01845 1.70735 1.27176 1.25520 1.31857 0.83553 0.75745 0.75660 0.75291 1.21501 1.21408 1.21677 1.58678 1.62709 1.02496 1.01904 1.21811 0.95531 0.99121 0.90471 1.22117 1.02196 0.95397 0.96579 1.20900 0.94715 0.95507 0.94797 1.22320 0.97745 1.00845 0.99426 1.21980 0.99225 1.00439 0.98046 1.21658 0.99378 0.96544 0.95604 1.20408 0.96730 0.94472 0.94638 1.23144 0.94453 1.03794 1.02735 1.21872 1.00875 0.95501 1.00928 1.20929 0.94686 0.88719 0.99412 0.92002 0.93564 0.96403 0.95994 0.91651 0.91794 0.95738 0.91358 0.88160 0.93483 0.92806 0.93588 0.91031 0.92965 0.93012 0.93381 0.93081 0.92988 0.94813 0.90465 0.88347 0.93441 0.93438 0.92626 0.89137 0.98540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.49 9.51 37.16 0.35 -2.14 16 2 C -0.11 -2.63 5.03 -26.73 -0.13 -2.77 16 3 C 0.21 5.07 1.44 -68.86 -0.10 4.97 16 4 H -0.01 -0.40 7.61 -51.93 -0.40 -0.79 16 5 C -0.58 -15.35 6.44 -34.44 -0.22 -15.57 16 6 H 0.06 1.60 6.25 -52.48 -0.33 1.27 16 7 C 0.02 0.55 5.25 -17.82 -0.09 0.46 16 8 N -0.92 -26.87 12.89 55.43 0.71 -26.16 16 9 Si 1.07 25.00 29.91 -169.99 -5.08 19.91 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 13 N -0.53 -10.81 1.91 -233.38 -0.44 -11.25 16 14 C 0.06 1.03 5.10 -4.51 -0.02 1.01 16 15 C -0.13 -1.85 4.11 -27.39 -0.11 -1.97 16 16 C -0.06 -0.77 0.47 -153.47 -0.07 -0.84 16 17 C -0.15 -1.66 7.56 37.16 0.28 -1.38 16 18 C -0.14 -1.66 7.89 37.16 0.29 -1.37 16 19 C -0.09 -1.35 3.56 -27.25 -0.10 -1.44 16 20 C -0.06 -0.98 0.77 -154.88 -0.12 -1.09 16 21 C -0.19 -2.84 7.31 37.16 0.27 -2.57 16 22 C -0.13 -1.93 7.97 37.16 0.30 -1.64 16 23 C 0.09 1.83 3.76 -6.75 -0.03 1.81 16 24 H 0.06 1.42 7.18 -51.93 -0.37 1.05 16 25 H 0.05 0.91 7.67 -51.93 -0.40 0.51 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.02 0.46 6.13 -51.93 -0.32 0.14 16 28 H 0.06 1.67 6.08 -51.93 -0.32 1.35 16 29 H 0.27 7.94 5.93 -40.82 -0.24 7.70 16 30 H 0.02 0.45 5.93 -51.93 -0.31 0.14 16 31 H 0.07 1.26 5.54 -51.93 -0.29 0.97 16 32 H 0.10 1.56 3.88 -51.93 -0.20 1.36 16 33 H 0.05 0.65 7.92 -51.93 -0.41 0.24 16 34 H 0.05 0.59 7.25 -51.93 -0.38 0.21 16 35 H 0.05 0.47 7.69 -51.93 -0.40 0.07 16 36 H 0.07 0.82 5.62 -51.93 -0.29 0.52 16 37 H 0.05 0.66 7.41 -51.93 -0.38 0.28 16 38 H 0.05 0.57 8.06 -51.93 -0.42 0.15 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.67 7.13 -51.93 -0.37 0.30 16 41 H 0.05 0.82 6.38 -51.93 -0.33 0.48 16 42 H 0.03 0.51 7.76 -51.93 -0.40 0.11 16 43 H 0.08 1.02 2.66 -51.93 -0.14 0.88 16 44 H 0.10 1.70 4.21 -51.93 -0.22 1.48 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.05 0.60 8.10 -51.93 -0.42 0.18 16 47 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 48 H 0.09 2.03 5.35 -51.93 -0.28 1.76 16 49 H 0.00 -0.07 7.54 -51.93 -0.39 -0.46 16 LS Contribution 330.04 15.07 4.97 4.97 Total: -1.00 -27.33 330.04 -7.83 -35.16 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -8.49 Total: 1.89 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 0.50 Total: -24.52 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.27 Total: -37.41 kcal Atomic # 14 Polarization: 25.00 SS G_CDS: -5.08 Total: 19.91 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.33 -7.83 -35.16 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699703725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.778 kcal (2) G-P(sol) polarization free energy of solvation -27.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds