Wall clock time and date at job start Mon Mar 30 2020 07:42:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47072 * 2 1 4 4 H 1.08996 * 109.47473 * 183.50389 * 3 2 1 5 5 C 1.50697 * 109.47416 * 63.50050 * 3 2 1 6 6 H 1.08004 * 120.00123 * 244.92264 * 5 3 2 7 7 C 1.37880 * 119.99988 * 64.91985 * 5 3 2 8 8 N 1.31514 * 120.00029 * 4.27151 * 7 5 3 9 9 Si 1.86801 * 120.00055 * 184.26610 * 7 5 3 10 10 H 1.48500 * 109.47178 * 0.02562 * 9 7 5 11 11 H 1.48492 * 109.47033 * 120.00273 * 9 7 5 12 12 H 1.48505 * 109.47008 * 240.00124 * 9 7 5 13 13 N 1.46908 * 109.47167 * 303.50014 * 3 2 1 14 14 C 1.47630 * 110.99677 * 299.82484 * 13 3 2 15 15 C 1.50826 * 108.05322 * 150.34590 * 14 13 3 16 16 C 1.53822 * 111.62322 * 95.05175 * 15 14 13 17 17 C 1.53000 * 108.97967 * 198.40459 * 16 15 14 18 18 C 1.53003 * 108.97769 * 79.68922 * 16 15 14 19 19 C 1.54164 * 111.96864 * 319.04867 * 16 15 14 20 20 C 1.50759 * 112.61262 * 318.48380 * 19 16 15 21 21 C 1.53001 * 109.54468 * 333.15999 * 20 19 16 22 22 C 1.52997 * 109.54776 * 212.88554 * 20 19 16 23 23 C 1.39767 * 111.00001 * 170.92956 * 13 3 2 24 24 H 1.08996 * 109.47381 * 304.70386 * 1 2 3 25 25 H 1.08996 * 109.46986 * 64.70905 * 1 2 3 26 26 H 1.08998 * 109.46530 * 184.70368 * 1 2 3 27 27 H 1.08996 * 109.47361 * 239.99417 * 2 1 3 28 28 H 1.08998 * 109.47267 * 119.99666 * 2 1 3 29 29 H 0.97005 * 119.99498 * 2.80081 * 8 7 5 30 30 H 1.09000 * 109.74657 * 269.98142 * 14 13 3 31 31 H 1.09000 * 109.75222 * 30.70835 * 14 13 3 32 32 H 1.09006 * 109.04228 * 334.50137 * 15 14 13 33 33 H 1.08994 * 109.05077 * 215.61163 * 15 14 13 34 34 H 1.08997 * 109.46929 * 142.52901 * 17 16 15 35 35 H 1.09005 * 109.46733 * 262.52184 * 17 16 15 36 36 H 1.09000 * 109.47251 * 22.52601 * 17 16 15 37 37 H 1.09001 * 109.46675 * 297.53779 * 18 16 15 38 38 H 1.08999 * 109.47300 * 57.53781 * 18 16 15 39 39 H 1.08997 * 109.46973 * 177.54362 * 18 16 15 40 40 H 1.09006 * 108.85185 * 197.68159 * 19 16 15 41 41 H 1.08998 * 108.77567 * 79.23985 * 19 16 15 42 42 H 1.09002 * 109.46995 * 214.97054 * 21 20 19 43 43 H 1.09005 * 109.46728 * 334.96410 * 21 20 19 44 44 H 1.08993 * 109.47296 * 94.96517 * 21 20 19 45 45 H 1.08999 * 109.47086 * 300.45725 * 22 20 19 46 46 H 1.09005 * 109.46977 * 60.45216 * 22 20 19 47 47 H 1.08995 * 109.47320 * 180.45187 * 22 20 19 48 48 H 1.08997 * 109.03104 * 309.71819 * 23 13 3 49 49 H 1.09005 * 109.02186 * 68.54277 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1282 1.4432 -0.0628 5 6 1.6098 2.1274 1.2715 6 1 0.9210 2.9583 1.2309 7 6 2.0955 1.6934 2.4867 8 7 2.9977 0.7376 2.5308 9 14 1.4720 2.4630 4.0705 10 1 0.4671 3.5085 3.7507 11 1 0.8444 1.4160 4.9160 12 1 2.6086 3.0760 4.8039 13 7 1.4825 2.1590 -1.1550 14 6 1.8875 1.5173 -2.4214 15 6 0.8003 1.7618 -3.4378 16 6 1.1048 2.9928 -4.3085 17 6 -0.1888 3.4609 -4.9781 18 6 2.1097 2.5990 -5.3929 19 6 1.6897 4.1543 -3.4806 20 6 0.9952 4.3279 -2.1539 21 6 -0.4404 3.8085 -2.2558 22 6 0.9795 5.8100 -1.7743 23 6 1.7591 3.5268 -1.0771 24 1 -0.3634 0.5851 0.8448 25 1 -0.3633 0.4390 -0.9291 26 1 -0.3632 -1.0242 0.0843 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 3.3514 0.3661 1.7074 30 1 2.8236 1.9522 -2.7717 31 1 2.0134 0.4456 -2.2675 32 1 -0.1444 1.9190 -2.9172 33 1 0.7098 0.8855 -4.0796 34 1 -0.2052 4.5501 -5.0151 35 1 -0.2383 3.0621 -5.9914 36 1 -1.0445 3.1039 -4.4049 37 1 3.0431 2.2844 -4.9262 38 1 1.7038 1.7776 -5.9834 39 1 2.2981 3.4544 -6.0416 40 1 1.5934 5.0776 -4.0521 41 1 2.7472 3.9599 -3.3019 42 1 -1.0944 4.4248 -1.6390 43 1 -0.7705 3.8544 -3.2937 44 1 -0.4789 2.7764 -1.9076 45 1 2.0030 6.1784 -1.7063 46 1 0.4400 6.3742 -2.5351 47 1 0.4842 5.9331 -0.8112 48 1 1.4709 3.8921 -0.0914 49 1 2.8297 3.6810 -1.2124 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699703725.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:58 Heat of formation + Delta-G solvation = 6.789991 kcal Electronic energy + Delta-G solvation = -23509.083877 eV Core-core repulsion = 20664.340822 eV Total energy + Delta-G solvation = -2844.743055 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.82759 -38.37274 -35.77869 -34.82951 -32.74053 -30.74846 -29.54899 -27.82553 -27.43496 -27.05603 -26.33839 -24.58391 -23.25982 -21.06544 -19.94018 -19.12375 -18.66005 -17.32427 -16.52046 -16.15762 -15.77674 -15.60451 -15.58607 -14.97128 -14.58510 -14.15393 -13.91127 -13.68547 -13.53863 -13.43714 -13.26233 -13.17234 -12.98186 -12.89863 -12.67535 -12.37276 -12.31616 -12.15669 -11.99750 -11.95075 -11.88751 -11.67778 -11.42216 -11.36039 -11.19338 -10.98196 -10.62048 -10.52757 -10.48570 -10.28680 -8.74895 -8.52168 -6.22953 1.52154 1.60143 1.76064 2.57326 3.23008 3.31549 3.76246 3.84365 3.96658 4.10902 4.16862 4.32163 4.37874 4.50001 4.54404 4.61539 4.63711 4.72427 4.74545 4.78473 4.80983 4.85414 4.89406 4.94326 4.99160 5.04699 5.12844 5.14664 5.15848 5.19586 5.21844 5.25662 5.32995 5.37076 5.39151 5.45505 5.50478 5.57645 5.58982 5.64891 5.73141 5.76830 5.97671 6.03122 6.17439 6.60189 6.74122 6.98535 7.54854 8.83265 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.024052 B = 0.006756 C = 0.005988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.862611 B = 4143.502780 C = 4675.228111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.108 4.108 3 C 0.213 3.787 4 H -0.060 1.060 5 C -0.575 4.575 6 H 0.052 0.948 7 C -0.029 4.029 8 N -0.941 5.941 9 Si 1.111 2.889 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.286 1.286 13 N -0.525 5.525 14 C 0.060 3.940 15 C -0.121 4.121 16 C -0.057 4.057 17 C -0.145 4.145 18 C -0.137 4.137 19 C -0.092 4.092 20 C -0.055 4.055 21 C -0.182 4.182 22 C -0.133 4.133 23 C 0.096 3.904 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.039 0.961 27 H 0.039 0.961 28 H 0.034 0.966 29 H 0.257 0.743 30 H 0.016 0.984 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.065 0.935 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.030 0.970 42 H 0.031 0.969 43 H 0.106 0.894 44 H 0.079 0.921 45 H 0.044 0.956 46 H 0.075 0.925 47 H 0.045 0.955 48 H 0.058 0.942 49 H -0.031 1.031 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.850 5.858 -15.400 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.147 4.147 3 C 0.106 3.894 4 H -0.043 1.043 5 C -0.614 4.614 6 H 0.070 0.930 7 C -0.227 4.227 8 N -0.580 5.580 9 Si 0.934 3.066 10 H -0.197 1.197 11 H -0.207 1.207 12 H -0.213 1.213 13 N -0.248 5.248 14 C -0.067 4.067 15 C -0.158 4.158 16 C -0.057 4.057 17 C -0.201 4.201 18 C -0.194 4.194 19 C -0.130 4.130 20 C -0.056 4.056 21 C -0.237 4.237 22 C -0.190 4.190 23 C -0.034 4.034 24 H 0.056 0.944 25 H 0.080 0.920 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.068 0.932 30 H 0.034 0.966 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.054 0.946 38 H 0.084 0.916 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.124 0.876 44 H 0.097 0.903 45 H 0.063 0.937 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.076 0.924 49 H -0.013 1.013 Dipole moment (debyes) X Y Z Total from point charges -7.190 5.768 -13.757 16.559 hybrid contribution 1.715 -0.097 -1.042 2.009 sum -5.474 5.671 -14.799 16.767 Atomic orbital electron populations 1.21292 0.94439 0.98960 1.01639 1.21521 0.97901 0.97060 0.98178 1.19143 0.88902 0.92036 0.89335 1.04311 1.22167 1.28925 1.17876 0.92409 0.92959 1.26957 0.94779 0.95749 1.05246 1.70847 1.28873 1.27180 1.31110 0.83001 0.75799 0.75539 0.72228 1.19734 1.20677 1.21274 1.58751 1.61790 1.02477 1.01755 1.21888 0.96693 0.98149 0.89965 1.22067 1.00354 0.97321 0.96054 1.20886 0.96261 0.93980 0.94612 1.22258 0.96097 1.01576 1.00181 1.21956 0.98149 1.01526 0.97813 1.21638 0.97908 0.98339 0.95072 1.20363 0.96722 0.94597 0.93880 1.23152 0.93688 1.02349 1.04539 1.21868 1.01124 0.94661 1.01364 1.20914 0.93766 0.89070 0.99613 0.94350 0.92002 0.94176 0.94299 0.94711 0.93218 0.96563 0.92217 0.88415 0.91718 0.91788 0.91778 0.90887 0.94586 0.91644 0.91963 0.90863 0.95146 0.95003 0.87578 0.90287 0.93680 0.90595 0.93624 0.92399 1.01274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.41 9.51 71.98 0.68 -3.73 16 2 C -0.11 -5.09 5.03 30.59 0.15 -4.94 16 3 C 0.21 10.78 1.44 44.17 0.06 10.85 16 4 H -0.06 -3.55 7.61 -2.39 -0.02 -3.57 16 5 C -0.58 -31.75 6.44 25.60 0.16 -31.58 16 6 H 0.05 2.92 6.25 -2.91 -0.02 2.90 16 7 C -0.03 -1.67 5.25 84.66 0.44 -1.23 16 8 N -0.94 -57.57 12.89 21.45 0.28 -57.29 16 9 Si 1.11 51.20 29.91 68.60 2.05 53.25 16 10 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 11 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 13 N -0.52 -21.81 1.91 -892.29 -1.70 -23.51 16 14 C 0.06 2.13 5.10 85.46 0.44 2.57 16 15 C -0.12 -3.30 4.11 30.16 0.12 -3.17 16 16 C -0.06 -1.31 0.47 -51.51 -0.02 -1.34 16 17 C -0.14 -2.58 7.56 71.98 0.54 -2.04 16 18 C -0.14 -2.84 7.89 71.98 0.57 -2.27 16 19 C -0.09 -2.45 3.56 30.26 0.11 -2.34 16 20 C -0.06 -1.68 0.77 -52.42 -0.04 -1.72 16 21 C -0.18 -5.16 7.31 71.98 0.53 -4.63 16 22 C -0.13 -3.62 7.97 71.98 0.57 -3.05 16 23 C 0.10 3.97 3.76 88.08 0.33 4.30 16 24 H 0.04 1.76 7.18 -2.39 -0.02 1.74 16 25 H 0.06 2.35 7.67 -2.39 -0.02 2.33 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.67 6.13 -2.39 -0.01 1.65 16 28 H 0.03 1.84 6.08 -2.39 -0.01 1.83 16 29 H 0.26 16.02 5.93 -92.70 -0.55 15.47 16 30 H 0.02 0.60 5.93 -2.39 -0.01 0.59 16 31 H 0.06 2.21 5.54 -2.39 -0.01 2.20 16 32 H 0.10 2.80 3.88 -2.38 -0.01 2.79 16 33 H 0.06 1.57 7.92 -2.39 -0.02 1.55 16 34 H 0.06 1.05 7.25 -2.39 -0.02 1.04 16 35 H 0.06 0.97 7.69 -2.38 -0.02 0.95 16 36 H 0.07 1.31 5.62 -2.39 -0.01 1.30 16 37 H 0.03 0.85 7.41 -2.39 -0.02 0.83 16 38 H 0.06 1.19 8.06 -2.39 -0.02 1.17 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.65 7.13 -2.38 -0.02 1.64 16 41 H 0.03 0.93 6.38 -2.39 -0.02 0.92 16 42 H 0.03 0.90 7.76 -2.39 -0.02 0.88 16 43 H 0.11 2.40 2.66 -2.39 -0.01 2.40 16 44 H 0.08 2.60 4.21 -2.39 -0.01 2.59 16 45 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.08 1.66 8.10 -2.38 -0.02 1.64 16 47 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 48 H 0.06 2.73 5.35 -2.39 -0.01 2.72 16 49 H -0.03 -1.40 7.54 -2.38 -0.02 -1.42 16 Total: -1.00 -62.22 330.04 6.42 -55.80 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: 1.13 Total: 16.06 kcal Atomic # 6 Polarization: -48.97 SS G_CDS: 4.66 Total: -44.32 kcal Atomic # 7 Polarization: -79.38 SS G_CDS: -1.42 Total: -80.80 kcal Atomic # 14 Polarization: 51.20 SS G_CDS: 2.05 Total: 53.25 kcal Total: -62.22 6.42 -55.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699703725.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.594 kcal (2) G-P(sol) polarization free energy of solvation -62.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds