Wall clock time and date at job start Mon Mar 30 2020 07:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47040 * 2 1 4 4 H 1.08998 * 109.47156 * 178.70905 * 3 2 1 5 5 C 1.50700 * 109.47074 * 298.70693 * 3 2 1 6 6 H 1.08000 * 120.00136 * 120.00402 * 5 3 2 7 7 C 1.37881 * 120.00175 * 299.99824 * 5 3 2 8 8 N 1.31508 * 120.00188 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99780 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47436 * 89.99515 * 9 7 5 11 11 H 1.48501 * 109.47137 * 209.99947 * 9 7 5 12 12 H 1.48504 * 109.47097 * 329.99796 * 9 7 5 13 13 N 1.46898 * 109.47027 * 58.70545 * 3 2 1 14 14 C 1.39779 * 110.99760 * 57.06006 * 13 3 2 15 15 C 1.54434 * 111.76499 * 189.12358 * 14 13 3 16 16 C 1.50753 * 109.03146 * 282.58850 * 15 14 13 17 17 C 1.52997 * 108.85718 * 213.82645 * 16 15 14 18 18 C 1.53001 * 108.85233 * 332.21613 * 16 15 14 19 19 C 1.54174 * 112.60806 * 93.01758 * 16 15 14 20 20 C 1.53822 * 111.97059 * 318.49461 * 19 16 15 21 21 C 1.52992 * 109.05011 * 79.59226 * 20 19 16 22 22 C 1.52997 * 109.04769 * 198.49158 * 20 19 16 23 23 C 1.47631 * 111.00117 * 185.94927 * 13 3 2 24 24 H 1.08995 * 109.47327 * 55.41492 * 1 2 3 25 25 H 1.09006 * 109.46665 * 295.41353 * 1 2 3 26 26 H 1.08996 * 109.46960 * 175.42271 * 1 2 3 27 27 H 1.09001 * 109.47359 * 120.00091 * 2 1 3 28 28 H 1.09005 * 109.46565 * 240.00288 * 2 1 3 29 29 H 0.96997 * 120.00118 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.02065 * 309.71371 * 14 13 3 31 31 H 1.08995 * 109.01852 * 68.54017 * 14 13 3 32 32 H 1.09004 * 109.54781 * 42.45676 * 15 14 13 33 33 H 1.09003 * 109.54515 * 162.72679 * 15 14 13 34 34 H 1.09000 * 109.47103 * 59.99859 * 17 16 15 35 35 H 1.08997 * 109.46907 * 180.02562 * 17 16 15 36 36 H 1.09001 * 109.46947 * 299.99852 * 17 16 15 37 37 H 1.08997 * 109.47503 * 42.19932 * 18 16 15 38 38 H 1.09000 * 109.46923 * 162.20454 * 18 16 15 39 39 H 1.09003 * 109.46896 * 282.20009 * 18 16 15 40 40 H 1.08999 * 108.97711 * 79.13204 * 19 16 15 41 41 H 1.09002 * 108.98036 * 197.84901 * 19 16 15 42 42 H 1.09000 * 109.47691 * 35.21619 * 21 20 19 43 43 H 1.09005 * 109.46856 * 155.21813 * 21 20 19 44 44 H 1.09006 * 109.47223 * 275.21201 * 21 20 19 45 45 H 1.09002 * 109.47416 * 59.99931 * 22 20 19 46 46 H 1.09003 * 109.47037 * 179.97438 * 22 20 19 47 47 H 1.08996 * 109.47051 * 299.99556 * 22 20 19 48 48 H 1.08994 * 109.74672 * 269.99259 * 23 13 3 49 49 H 1.09006 * 109.74604 * 30.71229 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 0.0232 5 6 1.5640 2.1436 -1.2462 6 1 0.9412 3.0224 -1.1670 7 6 1.9236 1.6632 -2.4875 8 7 1.5087 2.2753 -3.5750 9 14 3.0004 0.1429 -2.6246 10 1 2.1425 -1.0680 -2.6793 11 1 3.8190 0.2259 -3.8608 12 1 3.8956 0.0621 -1.4425 13 7 1.5249 2.1440 1.1835 14 6 1.8928 1.4814 2.3580 15 6 1.1779 2.0684 3.5946 16 6 1.8517 3.3592 3.9853 17 6 1.7988 3.5035 5.5076 18 6 3.3166 3.3045 3.5472 19 6 1.1857 4.5931 3.3443 20 6 0.8047 4.3433 1.8751 21 6 -0.4994 3.5448 1.8263 22 6 0.5907 5.6888 1.1791 23 6 1.8789 3.5767 1.1451 24 1 -0.3634 0.5833 -0.8460 25 1 -0.3633 0.4411 0.9283 26 1 -0.3633 -1.0244 -0.0820 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.7614 1.9371 -4.4483 30 1 1.6352 0.4263 2.2662 31 1 2.9704 1.5721 2.4943 32 1 0.1323 2.2611 3.3541 33 1 1.2388 1.3606 4.4213 34 1 2.3156 2.6628 5.9704 35 1 2.2833 4.4347 5.8012 36 1 0.7593 3.5162 5.8354 37 1 3.3818 2.8678 2.5507 38 1 3.7284 4.3135 3.5295 39 1 3.8833 2.6931 4.2496 40 1 0.2858 4.8423 3.9065 41 1 1.8769 5.4345 3.3933 42 1 -1.1456 3.8535 2.6481 43 1 -1.0038 3.7305 0.8780 44 1 -0.2781 2.4814 1.9179 45 1 1.5102 6.2724 1.2258 46 1 0.3206 5.5198 0.1367 47 1 -0.2108 6.2330 1.6787 48 1 2.8399 3.7319 1.6353 49 1 1.9339 3.9149 0.1103 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699703728.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:01 Heat of formation + Delta-G solvation = 43.372293 kcal Electronic energy + Delta-G solvation = -23732.405302 eV Core-core repulsion = 20889.248575 eV Total energy + Delta-G solvation = -2843.156727 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.72318 -36.47878 -34.71570 -32.82189 -31.38966 -29.28283 -27.74775 -26.57578 -26.31184 -26.07967 -24.98716 -22.67253 -21.99971 -19.40742 -18.08576 -17.85787 -16.61051 -15.89144 -15.59289 -15.03187 -14.14442 -13.76951 -13.56558 -13.43444 -13.31514 -12.97555 -12.78092 -12.56571 -12.30955 -12.12301 -11.99876 -11.54552 -11.38054 -11.22338 -11.10054 -11.05996 -10.83445 -10.64831 -10.52616 -10.36140 -10.28333 -10.15948 -9.96513 -9.84034 -9.69669 -9.54774 -9.28875 -9.17865 -8.79646 -8.50294 -6.88069 -6.03992 -4.00285 3.28192 3.38255 3.39562 4.42259 4.80049 4.98173 5.01383 5.11191 5.28542 5.43013 5.53584 5.62187 5.66848 5.78849 5.81475 5.86564 5.96058 5.99466 6.06245 6.10016 6.15329 6.17596 6.19626 6.25772 6.28540 6.32333 6.36076 6.40952 6.49986 6.51447 6.59036 6.64265 6.65676 6.73209 6.81736 6.84549 6.95514 6.98757 7.07571 7.17828 7.27006 7.39337 7.50018 7.70450 8.13352 8.36443 8.80057 9.04280 9.59338 11.08454 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.023666 B = 0.007374 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.826874 B = 3796.204522 C = 4189.415086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.123 4.123 3 C 0.190 3.810 4 H -0.006 1.006 5 C -0.495 4.495 6 H 0.086 0.914 7 C 0.071 3.929 8 N -0.899 5.899 9 Si 0.880 3.120 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.270 1.270 13 N -0.530 5.530 14 C 0.052 3.948 15 C -0.125 4.125 16 C -0.059 4.059 17 C -0.139 4.139 18 C -0.173 4.173 19 C -0.093 4.093 20 C -0.056 4.056 21 C -0.144 4.144 22 C -0.139 4.139 23 C 0.052 3.948 24 H 0.071 0.929 25 H 0.052 0.948 26 H 0.020 0.980 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.262 0.738 30 H 0.067 0.933 31 H 0.025 0.975 32 H 0.091 0.909 33 H 0.053 0.947 34 H 0.049 0.951 35 H 0.047 0.953 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.046 0.954 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.023 0.977 43 H 0.046 0.954 44 H 0.106 0.894 45 H 0.044 0.956 46 H 0.061 0.939 47 H 0.043 0.957 48 H 0.048 0.952 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 1.649 14.366 14.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.083 3.917 4 H 0.011 0.989 5 C -0.533 4.533 6 H 0.104 0.896 7 C -0.130 4.130 8 N -0.538 5.538 9 Si 0.711 3.289 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.196 1.196 13 N -0.254 5.254 14 C -0.078 4.078 15 C -0.162 4.162 16 C -0.059 4.059 17 C -0.196 4.196 18 C -0.230 4.230 19 C -0.130 4.130 20 C -0.056 4.056 21 C -0.201 4.201 22 C -0.197 4.197 23 C -0.074 4.074 24 H 0.090 0.910 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.053 0.947 28 H 0.062 0.938 29 H 0.072 0.928 30 H 0.085 0.915 31 H 0.043 0.957 32 H 0.109 0.891 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.114 0.886 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.043 0.957 43 H 0.065 0.935 44 H 0.124 0.876 45 H 0.063 0.937 46 H 0.080 0.920 47 H 0.062 0.938 48 H 0.065 0.935 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.433 1.631 14.170 14.270 hybrid contribution 1.471 -0.816 -0.110 1.686 sum 1.038 0.815 14.060 14.122 Atomic orbital electron populations 1.21491 0.95322 0.98399 1.03009 1.21934 0.97589 0.98369 0.98206 1.19662 0.92311 0.90422 0.89319 0.98895 1.20946 1.31590 1.13121 0.87647 0.89625 1.24886 0.95643 0.96590 0.95888 1.69872 1.45773 1.40488 0.97679 0.86978 0.80969 0.84225 0.76736 1.20609 1.22721 1.19550 1.58664 1.62933 1.02012 1.01763 1.21278 0.97252 0.98605 0.90627 1.21945 1.02194 0.95254 0.96836 1.20267 0.95562 0.95814 0.94272 1.21986 1.01089 1.00920 0.95617 1.22876 0.95547 1.01166 1.03363 1.22154 0.99313 0.95989 0.95563 1.20272 0.97329 0.94869 0.93154 1.22306 0.94365 1.04138 0.99280 1.21961 1.00237 0.96546 1.00910 1.22272 0.95553 0.87409 1.02172 0.90998 0.92895 0.96104 0.94718 0.93762 0.92775 0.91482 0.95722 0.89069 0.92793 0.93146 0.93363 0.93066 0.88594 0.93521 0.93732 0.92889 0.93024 0.95749 0.93535 0.87576 0.93651 0.92036 0.93765 0.93470 0.88471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.51 9.50 37.16 0.35 -2.16 16 2 C -0.12 -2.62 4.67 -26.73 -0.12 -2.75 16 3 C 0.19 4.25 1.40 -68.86 -0.10 4.15 16 4 H -0.01 -0.15 7.20 -51.93 -0.37 -0.53 16 5 C -0.49 -12.96 6.82 -34.44 -0.23 -13.20 16 6 H 0.09 2.44 6.86 -52.49 -0.36 2.08 16 7 C 0.07 1.98 5.45 -17.82 -0.10 1.88 16 8 N -0.90 -26.66 13.96 55.43 0.77 -25.88 16 9 Si 0.88 21.69 24.38 -169.99 -4.14 17.54 16 10 H -0.28 -6.78 6.86 56.52 0.39 -6.39 16 11 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 12 H -0.27 -6.46 6.53 56.52 0.37 -6.09 16 13 N -0.53 -9.98 1.32 -233.39 -0.31 -10.29 16 14 C 0.05 0.85 4.35 -6.74 -0.03 0.83 16 15 C -0.12 -1.75 4.93 -27.11 -0.13 -1.88 16 16 C -0.06 -0.77 0.72 -155.02 -0.11 -0.89 16 17 C -0.14 -1.56 7.96 37.16 0.30 -1.26 16 18 C -0.17 -2.37 6.49 37.16 0.24 -2.13 16 19 C -0.09 -1.26 3.87 -25.69 -0.10 -1.36 16 20 C -0.06 -0.87 0.73 -155.18 -0.11 -0.99 16 21 C -0.14 -2.37 7.09 37.15 0.26 -2.10 16 22 C -0.14 -2.12 7.96 37.16 0.30 -1.82 16 23 C 0.05 0.96 4.34 -4.52 -0.02 0.94 16 24 H 0.07 1.64 7.10 -51.93 -0.37 1.27 16 25 H 0.05 0.99 7.11 -51.93 -0.37 0.62 16 26 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.66 6.25 -51.93 -0.32 0.34 16 28 H 0.04 1.01 3.25 -51.93 -0.17 0.84 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.07 1.13 5.55 -51.93 -0.29 0.84 16 31 H 0.03 0.42 4.95 -51.93 -0.26 0.16 16 32 H 0.09 1.34 4.48 -51.93 -0.23 1.10 16 33 H 0.05 0.69 7.68 -51.93 -0.40 0.29 16 34 H 0.05 0.54 8.01 -51.93 -0.42 0.12 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.10 1.51 2.69 -51.93 -0.14 1.37 16 38 H 0.05 0.61 7.64 -51.93 -0.40 0.22 16 39 H 0.04 0.57 7.92 -51.93 -0.41 0.15 16 40 H 0.05 0.69 7.46 -51.93 -0.39 0.30 16 41 H 0.05 0.69 7.47 -51.93 -0.39 0.30 16 42 H 0.02 0.35 7.56 -51.93 -0.39 -0.04 16 43 H 0.05 0.84 7.90 -51.93 -0.41 0.43 16 44 H 0.11 1.84 3.35 -51.93 -0.17 1.67 16 45 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 46 H 0.06 1.05 8.03 -51.93 -0.42 0.63 16 47 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 48 H 0.05 0.83 4.02 -51.93 -0.21 0.62 16 49 H 0.10 2.10 5.24 -51.93 -0.27 1.83 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -26.93 323.15 -6.87 -33.80 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: -8.45 Total: 2.70 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 0.39 Total: -22.75 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.47 Total: -36.17 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.14 Total: 17.54 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.93 -6.87 -33.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699703728.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.170 kcal (2) G-P(sol) polarization free energy of solvation -26.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds