Wall clock time and date at job start Mon Mar 30 2020 07:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47040 * 2 1 4 4 H 1.08998 * 109.47156 * 178.70905 * 3 2 1 5 5 C 1.50700 * 109.47074 * 298.70693 * 3 2 1 6 6 H 1.08000 * 120.00136 * 120.00402 * 5 3 2 7 7 C 1.37881 * 120.00175 * 299.99824 * 5 3 2 8 8 N 1.31508 * 120.00188 * 180.02562 * 7 5 3 9 9 Si 1.86803 * 119.99780 * 0.02562 * 7 5 3 10 10 H 1.48497 * 109.47436 * 89.99515 * 9 7 5 11 11 H 1.48501 * 109.47137 * 209.99947 * 9 7 5 12 12 H 1.48504 * 109.47097 * 329.99796 * 9 7 5 13 13 N 1.46898 * 109.47027 * 58.70545 * 3 2 1 14 14 C 1.39779 * 110.99760 * 57.06006 * 13 3 2 15 15 C 1.54434 * 111.76499 * 189.12358 * 14 13 3 16 16 C 1.50753 * 109.03146 * 282.58850 * 15 14 13 17 17 C 1.52997 * 108.85718 * 213.82645 * 16 15 14 18 18 C 1.53001 * 108.85233 * 332.21613 * 16 15 14 19 19 C 1.54174 * 112.60806 * 93.01758 * 16 15 14 20 20 C 1.53822 * 111.97059 * 318.49461 * 19 16 15 21 21 C 1.52992 * 109.05011 * 79.59226 * 20 19 16 22 22 C 1.52997 * 109.04769 * 198.49158 * 20 19 16 23 23 C 1.47631 * 111.00117 * 185.94927 * 13 3 2 24 24 H 1.08995 * 109.47327 * 55.41492 * 1 2 3 25 25 H 1.09006 * 109.46665 * 295.41353 * 1 2 3 26 26 H 1.08996 * 109.46960 * 175.42271 * 1 2 3 27 27 H 1.09001 * 109.47359 * 120.00091 * 2 1 3 28 28 H 1.09005 * 109.46565 * 240.00288 * 2 1 3 29 29 H 0.96997 * 120.00118 * 180.02562 * 8 7 5 30 30 H 1.08996 * 109.02065 * 309.71371 * 14 13 3 31 31 H 1.08995 * 109.01852 * 68.54017 * 14 13 3 32 32 H 1.09004 * 109.54781 * 42.45676 * 15 14 13 33 33 H 1.09003 * 109.54515 * 162.72679 * 15 14 13 34 34 H 1.09000 * 109.47103 * 59.99859 * 17 16 15 35 35 H 1.08997 * 109.46907 * 180.02562 * 17 16 15 36 36 H 1.09001 * 109.46947 * 299.99852 * 17 16 15 37 37 H 1.08997 * 109.47503 * 42.19932 * 18 16 15 38 38 H 1.09000 * 109.46923 * 162.20454 * 18 16 15 39 39 H 1.09003 * 109.46896 * 282.20009 * 18 16 15 40 40 H 1.08999 * 108.97711 * 79.13204 * 19 16 15 41 41 H 1.09002 * 108.98036 * 197.84901 * 19 16 15 42 42 H 1.09000 * 109.47691 * 35.21619 * 21 20 19 43 43 H 1.09005 * 109.46856 * 155.21813 * 21 20 19 44 44 H 1.09006 * 109.47223 * 275.21201 * 21 20 19 45 45 H 1.09002 * 109.47416 * 59.99931 * 22 20 19 46 46 H 1.09003 * 109.47037 * 179.97438 * 22 20 19 47 47 H 1.08996 * 109.47051 * 299.99556 * 22 20 19 48 48 H 1.08994 * 109.74672 * 269.99259 * 23 13 3 49 49 H 1.09006 * 109.74604 * 30.71229 * 23 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1297 1.4426 0.0232 5 6 1.5640 2.1436 -1.2462 6 1 0.9412 3.0224 -1.1670 7 6 1.9236 1.6632 -2.4875 8 7 1.5087 2.2753 -3.5750 9 14 3.0004 0.1429 -2.6246 10 1 2.1425 -1.0680 -2.6793 11 1 3.8190 0.2259 -3.8608 12 1 3.8956 0.0621 -1.4425 13 7 1.5249 2.1440 1.1835 14 6 1.8928 1.4814 2.3580 15 6 1.1779 2.0684 3.5946 16 6 1.8517 3.3592 3.9853 17 6 1.7988 3.5035 5.5076 18 6 3.3166 3.3045 3.5472 19 6 1.1857 4.5931 3.3443 20 6 0.8047 4.3433 1.8751 21 6 -0.4994 3.5448 1.8263 22 6 0.5907 5.6888 1.1791 23 6 1.8789 3.5767 1.1451 24 1 -0.3634 0.5833 -0.8460 25 1 -0.3633 0.4411 0.9283 26 1 -0.3633 -1.0244 -0.0820 27 1 1.8934 -0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.7614 1.9371 -4.4483 30 1 1.6352 0.4263 2.2662 31 1 2.9704 1.5721 2.4943 32 1 0.1323 2.2611 3.3541 33 1 1.2388 1.3606 4.4213 34 1 2.3156 2.6628 5.9704 35 1 2.2833 4.4347 5.8012 36 1 0.7593 3.5162 5.8354 37 1 3.3818 2.8678 2.5507 38 1 3.7284 4.3135 3.5295 39 1 3.8833 2.6931 4.2496 40 1 0.2858 4.8423 3.9065 41 1 1.8769 5.4345 3.3933 42 1 -1.1456 3.8535 2.6481 43 1 -1.0038 3.7305 0.8780 44 1 -0.2781 2.4814 1.9179 45 1 1.5102 6.2724 1.2258 46 1 0.3206 5.5198 0.1367 47 1 -0.2108 6.2330 1.6787 48 1 2.8399 3.7319 1.6353 49 1 1.9339 3.9149 0.1103 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699703728.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:43:01 Heat of formation + Delta-G solvation = 29.877641 kcal Electronic energy + Delta-G solvation = -23732.990474 eV Core-core repulsion = 20889.248575 eV Total energy + Delta-G solvation = -2843.741899 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.03575 -38.01348 -35.94142 -34.64784 -33.20118 -30.67174 -29.00016 -27.99683 -27.75760 -27.27489 -26.41299 -24.42864 -23.39588 -21.05789 -19.44037 -19.00394 -18.47939 -17.49834 -17.08743 -16.58274 -15.44841 -15.32582 -15.15336 -14.88580 -14.77112 -14.41432 -14.26887 -14.00304 -13.69396 -13.30800 -13.15269 -13.00950 -12.80386 -12.64706 -12.55799 -12.46689 -12.28317 -12.21606 -12.05923 -11.91228 -11.81499 -11.48493 -11.32435 -11.24275 -11.12436 -11.05220 -10.84877 -10.67718 -10.62538 -10.40110 -8.40241 -8.20845 -6.19277 1.29616 1.34147 1.42519 2.34792 3.13446 3.34617 3.87085 3.95056 4.00743 4.18080 4.28970 4.33860 4.41742 4.45529 4.50262 4.64481 4.71870 4.73846 4.80491 4.83899 4.88557 4.92409 4.93835 4.97674 5.05796 5.10859 5.14111 5.15526 5.20401 5.22107 5.26094 5.28312 5.32108 5.37424 5.41946 5.46827 5.52425 5.62307 5.66196 5.70197 5.72188 5.78068 5.84776 6.05758 6.23422 6.61994 6.87839 7.13323 7.43649 8.95031 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.023666 B = 0.007374 C = 0.006682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.826874 B = 3796.204522 C = 4189.415086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.124 4.124 3 C 0.193 3.807 4 H -0.022 1.022 5 C -0.478 4.478 6 H 0.048 0.952 7 C 0.015 3.985 8 N -0.949 5.949 9 Si 0.936 3.064 10 H -0.269 1.269 11 H -0.305 1.305 12 H -0.256 1.256 13 N -0.527 5.527 14 C 0.046 3.954 15 C -0.117 4.117 16 C -0.059 4.059 17 C -0.133 4.133 18 C -0.170 4.170 19 C -0.087 4.087 20 C -0.053 4.053 21 C -0.138 4.138 22 C -0.135 4.135 23 C 0.056 3.944 24 H 0.034 0.966 25 H 0.065 0.935 26 H 0.044 0.956 27 H 0.065 0.935 28 H 0.030 0.970 29 H 0.261 0.739 30 H 0.068 0.932 31 H 0.027 0.973 32 H 0.087 0.913 33 H 0.075 0.925 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.071 0.929 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.100 0.900 45 H 0.052 0.948 46 H 0.029 0.971 47 H 0.064 0.936 48 H 0.058 0.942 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 0.675 17.952 17.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.161 4.161 3 C 0.085 3.915 4 H -0.005 1.005 5 C -0.516 4.516 6 H 0.066 0.934 7 C -0.181 4.181 8 N -0.590 5.590 9 Si 0.765 3.235 10 H -0.196 1.196 11 H -0.233 1.233 12 H -0.181 1.181 13 N -0.250 5.250 14 C -0.083 4.083 15 C -0.154 4.154 16 C -0.059 4.059 17 C -0.190 4.190 18 C -0.227 4.227 19 C -0.124 4.124 20 C -0.054 4.054 21 C -0.195 4.195 22 C -0.193 4.193 23 C -0.071 4.071 24 H 0.053 0.947 25 H 0.084 0.916 26 H 0.063 0.937 27 H 0.084 0.916 28 H 0.048 0.952 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.045 0.955 32 H 0.105 0.895 33 H 0.094 0.906 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.069 0.931 39 H 0.075 0.925 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.118 0.882 45 H 0.072 0.928 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.076 0.924 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.104 0.653 17.791 17.803 hybrid contribution 1.346 -0.426 -1.194 1.850 sum 1.242 0.227 16.597 16.645 Atomic orbital electron populations 1.21376 0.94563 0.99322 1.02033 1.21901 0.98231 0.97080 0.98926 1.19477 0.91241 0.91487 0.89245 1.00495 1.21111 1.29497 1.11597 0.89418 0.93436 1.25599 0.97310 0.99549 0.95668 1.70022 1.48189 1.42618 0.98214 0.86056 0.79563 0.81146 0.76761 1.19574 1.23302 1.18061 1.58675 1.62684 1.02024 1.01631 1.21416 0.97898 0.98540 0.90458 1.21890 1.01481 0.96106 0.95960 1.20275 0.94776 0.94944 0.95927 1.21917 1.01951 1.01712 0.93456 1.22793 0.96346 1.01418 1.02105 1.22094 1.00244 0.96697 0.93366 1.20241 0.96020 0.94313 0.94830 1.22248 0.94823 1.03875 0.98528 1.21915 1.01310 0.96888 0.99202 1.22201 0.97366 0.87535 0.99970 0.94718 0.91567 0.93701 0.91626 0.95198 0.92994 0.91386 0.95502 0.89486 0.90643 0.92326 0.92653 0.92191 0.91119 0.93149 0.92491 0.91417 0.92335 0.93427 0.96522 0.88227 0.92847 0.95201 0.91743 0.92395 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.53 9.50 71.98 0.68 -3.84 16 2 C -0.12 -5.09 4.67 30.60 0.14 -4.94 16 3 C 0.19 8.71 1.40 44.17 0.06 8.77 16 4 H -0.02 -1.07 7.20 -2.39 -0.02 -1.09 16 5 C -0.48 -26.21 6.82 25.60 0.17 -26.04 16 6 H 0.05 2.93 6.86 -2.91 -0.02 2.91 16 7 C 0.02 0.88 5.45 84.66 0.46 1.34 16 8 N -0.95 -59.07 13.96 21.45 0.30 -58.77 16 9 Si 0.94 45.49 24.38 68.60 1.67 47.16 16 10 H -0.27 -12.58 6.86 99.48 0.68 -11.90 16 11 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 12 H -0.26 -11.74 6.53 99.48 0.65 -11.09 16 13 N -0.53 -19.68 1.32 -892.30 -1.18 -20.86 16 14 C 0.05 1.40 4.35 88.07 0.38 1.79 16 15 C -0.12 -2.87 4.93 30.35 0.15 -2.72 16 16 C -0.06 -1.34 0.72 -52.51 -0.04 -1.38 16 17 C -0.13 -2.36 7.96 71.98 0.57 -1.79 16 18 C -0.17 -4.17 6.49 71.98 0.47 -3.70 16 19 C -0.09 -2.10 3.87 31.27 0.12 -1.98 16 20 C -0.05 -1.65 0.73 -52.62 -0.04 -1.68 16 21 C -0.14 -4.44 7.09 71.98 0.51 -3.93 16 22 C -0.14 -4.17 7.96 71.98 0.57 -3.59 16 23 C 0.06 2.07 4.34 85.45 0.37 2.44 16 24 H 0.03 1.59 7.10 -2.39 -0.02 1.58 16 25 H 0.07 2.38 7.11 -2.38 -0.02 2.36 16 26 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.07 2.31 6.25 -2.39 -0.01 2.29 16 28 H 0.03 1.32 3.25 -2.38 -0.01 1.31 16 29 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.07 2.07 5.55 -2.39 -0.01 2.06 16 31 H 0.03 0.85 4.95 -2.39 -0.01 0.84 16 32 H 0.09 2.25 4.48 -2.39 -0.01 2.24 16 33 H 0.07 1.57 7.68 -2.39 -0.02 1.55 16 34 H 0.06 0.96 8.01 -2.39 -0.02 0.95 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.07 2.11 2.69 -2.39 -0.01 2.10 16 38 H 0.05 1.18 7.64 -2.39 -0.02 1.17 16 39 H 0.06 1.25 7.92 -2.39 -0.02 1.23 16 40 H 0.07 1.48 7.46 -2.39 -0.02 1.47 16 41 H 0.06 1.36 7.47 -2.39 -0.02 1.35 16 42 H 0.05 1.29 7.56 -2.39 -0.02 1.27 16 43 H 0.02 0.60 7.90 -2.38 -0.02 0.58 16 44 H 0.10 3.35 3.35 -2.38 -0.01 3.34 16 45 H 0.05 1.52 8.12 -2.39 -0.02 1.50 16 46 H 0.03 1.07 8.03 -2.39 -0.02 1.06 16 47 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 48 H 0.06 2.03 4.02 -2.39 -0.01 2.02 16 49 H 0.05 2.39 5.24 -2.38 -0.01 2.37 16 Total: -1.00 -61.05 323.15 6.23 -54.81 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: 0.84 Total: 18.90 kcal Atomic # 6 Polarization: -45.84 SS G_CDS: 4.60 Total: -41.25 kcal Atomic # 7 Polarization: -78.75 SS G_CDS: -0.88 Total: -79.63 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 1.67 Total: 47.16 kcal Total: -61.05 6.23 -54.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699703728.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.692 kcal (2) G-P(sol) polarization free energy of solvation -61.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.814 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds