Wall clock time and date at job start Mon Mar 30 2020 06:56:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 C 1.52997 * 109.47198 * 239.99860 * 2 1 3 5 5 C 1.52997 * 109.47256 * 119.99544 * 2 1 3 6 6 H 1.09005 * 115.56565 * 205.69177 * 5 2 1 7 7 C 1.53076 * 117.49472 * 351.40395 * 5 2 1 8 8 C 1.52996 * 59.98426 * 107.48320 * 7 5 2 9 9 H 1.09002 * 117.49908 * 252.49613 * 8 7 5 10 10 C 1.53005 * 117.49881 * 107.50288 * 8 7 5 11 11 N 1.46904 * 109.47178 * 116.24886 * 10 8 7 12 12 C 1.46899 * 111.00029 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47254 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47127 * 59.99866 * 13 12 11 15 15 C 1.52999 * 109.46991 * 300.00551 * 13 12 11 16 16 C 1.52997 * 109.47232 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.47084 * 179.97438 * 16 13 12 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 13 19 19 C 1.37880 * 119.99788 * 180.02562 * 17 16 13 20 20 N 1.31510 * 119.99893 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99600 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47313 * 90.00058 * 21 19 17 23 23 H 1.48500 * 109.46706 * 210.00040 * 21 19 17 24 24 H 1.48500 * 109.46954 * 329.99547 * 21 19 17 25 25 H 1.09001 * 109.46916 * 300.00081 * 1 2 3 26 26 H 1.09001 * 109.46933 * 60.00214 * 1 2 3 27 27 H 1.09007 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47488 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47105 * 299.99681 * 3 2 1 30 30 H 1.08992 * 109.47346 * 59.99895 * 3 2 1 31 31 H 1.08994 * 109.47528 * 299.99706 * 4 2 1 32 32 H 1.09001 * 109.47239 * 60.00113 * 4 2 1 33 33 H 1.09003 * 109.47144 * 180.02562 * 4 2 1 34 34 H 1.08997 * 117.49175 * 359.97438 * 7 5 2 35 35 H 1.08998 * 117.51123 * 214.95942 * 7 5 2 36 36 H 1.09003 * 109.46875 * 356.25269 * 10 8 7 37 37 H 1.08995 * 109.47205 * 236.25026 * 10 8 7 38 38 H 1.00892 * 111.00125 * 303.96067 * 11 10 8 39 39 H 1.09002 * 109.47043 * 60.00207 * 12 11 10 40 40 H 1.09001 * 109.46901 * 300.00429 * 12 11 10 41 41 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 42 42 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 43 43 H 1.09000 * 109.47050 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.47160 * 179.97438 * 15 13 12 45 45 H 1.09002 * 109.46719 * 299.99711 * 15 13 12 46 46 H 1.08993 * 109.47839 * 59.99553 * 15 13 12 47 47 H 1.09001 * 109.47375 * 299.99867 * 16 13 12 48 48 H 1.09002 * 109.46777 * 60.00422 * 16 13 12 49 49 H 0.97005 * 119.99227 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 3.0323 -0.4260 1.5907 7 6 1.0098 -1.1022 2.3154 8 6 1.6358 -2.1851 1.4344 9 1 1.0068 -2.6346 0.6659 10 6 2.6553 -3.1228 2.0844 11 7 2.1363 -4.4970 2.0686 12 6 3.0911 -5.4274 2.6856 13 6 2.5172 -6.8452 2.6501 14 6 2.2682 -7.2584 1.1980 15 6 1.1977 -6.8808 3.4237 16 6 3.5119 -7.8143 3.2921 17 6 2.9463 -9.2107 3.2576 18 1 1.9748 -9.3892 2.8211 19 6 3.6692 -10.2605 3.7835 20 7 4.8521 -10.0430 4.3156 21 14 2.9684 -11.9915 3.7401 22 1 3.3825 -12.6619 2.4815 23 1 3.4794 -12.7616 4.9025 24 1 1.4861 -11.9271 3.8021 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 -0.0308 -0.8386 2.1265 35 1 1.3243 -1.0577 3.3581 36 1 2.8295 -2.8120 3.1146 37 1 3.5923 -3.0818 1.5291 38 1 1.2363 -4.5489 2.5215 39 1 3.2688 -5.1328 3.7199 40 1 4.0310 -5.4023 2.1341 41 1 1.5597 -6.5680 0.7403 42 1 3.2082 -7.2329 0.6468 43 1 1.8589 -8.2683 1.1728 44 1 0.7886 -7.8908 3.3981 45 1 1.3751 -6.5864 4.4582 46 1 0.4893 -6.1905 2.9660 47 1 4.4517 -7.7889 2.7405 48 1 3.6896 -7.5201 4.3265 49 1 5.3607 -10.7817 4.6852 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699838541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:39 Heat of formation + Delta-G solvation = -14.425412 kcal Electronic energy + Delta-G solvation = -20867.168469 eV Core-core repulsion = 18021.505445 eV Total energy + Delta-G solvation = -2845.663023 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.48866 -37.53392 -35.07714 -33.23396 -31.93721 -27.76132 -27.48207 -27.16272 -26.38287 -26.25864 -24.17214 -23.01965 -22.06084 -20.61958 -18.52867 -17.80944 -16.33766 -16.17339 -15.23379 -14.82443 -14.69696 -14.29629 -14.01694 -13.86723 -13.40922 -13.27178 -12.72165 -12.64516 -12.44755 -12.34172 -12.16946 -11.96629 -11.86800 -11.71411 -11.40353 -11.15442 -11.02075 -10.93704 -10.86033 -10.74034 -10.72339 -10.46779 -10.24399 -10.11492 -9.98976 -9.75462 -9.63565 -8.97673 -8.79443 -8.29483 -8.02930 -5.94042 -3.93976 3.34940 3.41320 3.44135 3.65843 4.23913 4.50166 4.59185 4.61846 4.78579 4.91510 5.03596 5.12015 5.32347 5.37983 5.41786 5.47372 5.48361 5.54750 5.61113 5.68964 5.70581 5.71810 5.77626 5.81270 5.85861 5.92230 5.95207 6.02845 6.08607 6.16921 6.18967 6.28239 6.33200 6.39473 6.55389 6.70328 6.83174 6.86690 7.24631 7.28049 7.29832 7.46390 7.72071 7.76384 7.89181 8.06589 8.51210 9.11495 9.68670 11.17707 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.045323 B = 0.002921 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.643924 B = 9584.601460 C = 9625.489625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.138 4.138 4 C -0.140 4.140 5 C -0.138 4.138 6 H 0.100 0.900 7 C -0.185 4.185 8 C -0.137 4.137 9 H 0.111 0.889 10 C 0.088 3.912 11 N -0.685 5.685 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.115 4.115 15 C -0.129 4.129 16 C 0.033 3.967 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.057 0.943 26 H 0.052 0.948 27 H 0.057 0.943 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.054 0.946 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.024 0.976 37 H 0.071 0.929 38 H 0.338 0.662 39 H 0.022 0.978 40 H 0.065 0.935 41 H 0.042 0.958 42 H 0.039 0.961 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.033 0.967 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.311 21.001 -7.272 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.038 4.038 3 C -0.195 4.195 4 C -0.197 4.197 5 C -0.157 4.157 6 H 0.118 0.882 7 C -0.222 4.222 8 C -0.156 4.156 9 H 0.129 0.871 10 C -0.041 4.041 11 N -0.316 5.316 12 C -0.059 4.059 13 C -0.059 4.059 14 C -0.173 4.173 15 C -0.186 4.186 16 C -0.004 4.004 17 C -0.544 4.544 18 H 0.077 0.923 19 C -0.146 4.146 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.107 0.893 36 H 0.042 0.958 37 H 0.089 0.911 38 H 0.157 0.843 39 H 0.040 0.960 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.052 0.948 47 H 0.033 0.967 48 H 0.030 0.970 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.945 20.783 -7.821 23.266 hybrid contribution -0.241 -0.787 1.099 1.373 sum -7.186 19.996 -6.721 22.286 Atomic orbital electron populations 1.22007 0.94811 1.01923 1.01446 1.20043 0.95182 0.94806 0.93787 1.21839 1.00925 0.95291 1.01479 1.21846 1.01142 1.00562 0.96147 1.22418 0.99133 0.97076 0.97042 0.88164 1.23340 0.98712 1.04134 0.96015 1.22419 1.01604 0.89458 1.02071 0.87057 1.21493 0.96856 0.88242 0.97528 1.60540 1.06332 1.04509 1.60241 1.22099 0.95198 0.92833 0.95731 1.20622 0.96422 0.92637 0.96174 1.21594 1.00171 1.00310 0.95197 1.21764 0.96748 1.01541 0.98542 1.19127 0.93319 0.92805 0.95166 1.21246 1.03308 0.92241 1.37624 0.92290 1.25021 0.94998 0.98925 0.95704 1.69971 1.12041 1.31523 1.40278 0.86663 0.79275 0.85024 0.77451 1.20779 1.21411 1.19948 0.92407 0.92878 0.92358 0.92699 0.92803 0.92716 0.92153 0.93012 0.92648 0.88386 0.89346 0.95768 0.91110 0.84275 0.96019 0.91671 0.93892 0.94219 0.92752 0.91750 0.94168 0.94781 0.96704 0.96953 0.93191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 7.07 37.16 0.26 -0.86 16 2 C -0.04 -0.31 0.88 -154.51 -0.14 -0.45 16 3 C -0.14 -1.01 8.46 37.16 0.31 -0.70 16 4 C -0.14 -1.20 8.31 37.16 0.31 -0.89 16 5 C -0.14 -1.28 4.87 -90.58 -0.44 -1.72 16 6 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 7 C -0.19 -1.74 9.22 -26.69 -0.25 -1.99 16 8 C -0.14 -1.46 4.80 -90.62 -0.43 -1.90 16 9 H 0.11 1.27 7.07 -51.93 -0.37 0.90 16 10 C 0.09 1.12 5.97 -3.82 -0.02 1.10 16 11 N -0.68 -10.15 5.71 -113.77 -0.65 -10.80 16 12 C 0.07 1.24 4.65 -3.83 -0.02 1.22 16 13 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 14 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 15 C -0.13 -2.43 7.89 37.16 0.29 -2.14 16 16 C 0.03 0.85 4.04 -27.88 -0.11 0.74 16 17 C -0.51 -13.98 7.65 -34.44 -0.26 -14.24 16 18 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 21 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.06 0.43 6.98 -51.93 -0.36 0.07 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.48 7.07 -51.93 -0.37 0.12 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.57 7.29 -51.93 -0.38 0.19 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.85 5.85 -51.93 -0.30 0.55 16 35 H 0.09 0.85 8.03 -51.93 -0.42 0.43 16 36 H 0.02 0.31 7.88 -51.93 -0.41 -0.10 16 37 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.34 4.86 6.77 -39.30 -0.27 4.59 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.04 0.76 7.60 -51.93 -0.39 0.37 16 42 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.05 1.14 6.62 -51.93 -0.34 0.79 16 44 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 45 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.03 0.55 6.57 -51.93 -0.34 0.20 16 47 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -28.67 370.07 -9.39 -38.05 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -9.64 Total: 0.43 kcal Atomic # 6 Polarization: -23.24 SS G_CDS: -0.39 Total: -23.63 kcal Atomic # 7 Polarization: -37.26 SS G_CDS: 0.09 Total: -37.18 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.67 -9.39 -38.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699838541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.629 kcal (2) G-P(sol) polarization free energy of solvation -28.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds