Wall clock time and date at job start Mon Mar 30 2020 06:56:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46996 * 2 1 4 4 C 1.52997 * 109.47198 * 239.99860 * 2 1 3 5 5 C 1.52997 * 109.47256 * 119.99544 * 2 1 3 6 6 H 1.09005 * 115.56565 * 205.69177 * 5 2 1 7 7 C 1.53076 * 117.49472 * 351.40395 * 5 2 1 8 8 C 1.52996 * 59.98426 * 107.48320 * 7 5 2 9 9 H 1.09002 * 117.49908 * 252.49613 * 8 7 5 10 10 C 1.53005 * 117.49881 * 107.50288 * 8 7 5 11 11 N 1.46904 * 109.47178 * 116.24886 * 10 8 7 12 12 C 1.46899 * 111.00029 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47254 * 180.02562 * 12 11 10 14 14 C 1.53006 * 109.47127 * 59.99866 * 13 12 11 15 15 C 1.52999 * 109.46991 * 300.00551 * 13 12 11 16 16 C 1.52997 * 109.47232 * 179.97438 * 13 12 11 17 17 C 1.50703 * 109.47084 * 179.97438 * 16 13 12 18 18 H 1.07996 * 119.99751 * 0.02562 * 17 16 13 19 19 C 1.37880 * 119.99788 * 180.02562 * 17 16 13 20 20 N 1.31510 * 119.99893 * 0.02562 * 19 17 16 21 21 Si 1.86806 * 119.99600 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47313 * 90.00058 * 21 19 17 23 23 H 1.48500 * 109.46706 * 210.00040 * 21 19 17 24 24 H 1.48500 * 109.46954 * 329.99547 * 21 19 17 25 25 H 1.09001 * 109.46916 * 300.00081 * 1 2 3 26 26 H 1.09001 * 109.46933 * 60.00214 * 1 2 3 27 27 H 1.09007 * 109.46859 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47488 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.47105 * 299.99681 * 3 2 1 30 30 H 1.08992 * 109.47346 * 59.99895 * 3 2 1 31 31 H 1.08994 * 109.47528 * 299.99706 * 4 2 1 32 32 H 1.09001 * 109.47239 * 60.00113 * 4 2 1 33 33 H 1.09003 * 109.47144 * 180.02562 * 4 2 1 34 34 H 1.08997 * 117.49175 * 359.97438 * 7 5 2 35 35 H 1.08998 * 117.51123 * 214.95942 * 7 5 2 36 36 H 1.09003 * 109.46875 * 356.25269 * 10 8 7 37 37 H 1.08995 * 109.47205 * 236.25026 * 10 8 7 38 38 H 1.00892 * 111.00125 * 303.96067 * 11 10 8 39 39 H 1.09002 * 109.47043 * 60.00207 * 12 11 10 40 40 H 1.09001 * 109.46901 * 300.00429 * 12 11 10 41 41 H 1.09001 * 109.46801 * 300.00272 * 14 13 12 42 42 H 1.09001 * 109.46998 * 59.99868 * 14 13 12 43 43 H 1.09000 * 109.47050 * 180.02562 * 14 13 12 44 44 H 1.09000 * 109.47160 * 179.97438 * 15 13 12 45 45 H 1.09002 * 109.46719 * 299.99711 * 15 13 12 46 46 H 1.08993 * 109.47839 * 59.99553 * 15 13 12 47 47 H 1.09001 * 109.47375 * 299.99867 * 16 13 12 48 48 H 1.09002 * 109.46777 * 60.00422 * 16 13 12 49 49 H 0.97005 * 119.99227 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7211 1.2493 6 1 3.0323 -0.4260 1.5907 7 6 1.0098 -1.1022 2.3154 8 6 1.6358 -2.1851 1.4344 9 1 1.0068 -2.6346 0.6659 10 6 2.6553 -3.1228 2.0844 11 7 2.1363 -4.4970 2.0686 12 6 3.0911 -5.4274 2.6856 13 6 2.5172 -6.8452 2.6501 14 6 2.2682 -7.2584 1.1980 15 6 1.1977 -6.8808 3.4237 16 6 3.5119 -7.8143 3.2921 17 6 2.9463 -9.2107 3.2576 18 1 1.9748 -9.3892 2.8211 19 6 3.6692 -10.2605 3.7835 20 7 4.8521 -10.0430 4.3156 21 14 2.9684 -11.9915 3.7401 22 1 3.3825 -12.6619 2.4815 23 1 3.4794 -12.7616 4.9025 24 1 1.4861 -11.9271 3.8021 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6768 -1.7489 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.1300 -0.7217 -1.2490 34 1 -0.0308 -0.8386 2.1265 35 1 1.3243 -1.0577 3.3581 36 1 2.8295 -2.8120 3.1146 37 1 3.5923 -3.0818 1.5291 38 1 1.2363 -4.5489 2.5215 39 1 3.2688 -5.1328 3.7199 40 1 4.0310 -5.4023 2.1341 41 1 1.5597 -6.5680 0.7403 42 1 3.2082 -7.2329 0.6468 43 1 1.8589 -8.2683 1.1728 44 1 0.7886 -7.8908 3.3981 45 1 1.3751 -6.5864 4.4582 46 1 0.4893 -6.1905 2.9660 47 1 4.4517 -7.7889 2.7405 48 1 3.6896 -7.5201 4.3265 49 1 5.3607 -10.7817 4.6852 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699838541.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:38 Heat of formation + Delta-G solvation = -28.516908 kcal Electronic energy + Delta-G solvation = -20867.779522 eV Core-core repulsion = 18021.505445 eV Total energy + Delta-G solvation = -2846.274077 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.27535 -39.05369 -36.19612 -34.73049 -33.61316 -29.21092 -28.34325 -28.08274 -27.89256 -27.65262 -25.79310 -23.79537 -23.72594 -21.52956 -19.50741 -19.17291 -18.33232 -17.26117 -16.57979 -16.29619 -15.80415 -15.55631 -15.09964 -14.86524 -14.73551 -14.43018 -14.08513 -13.93257 -13.84622 -13.55555 -13.24173 -13.08244 -12.87344 -12.75138 -12.68835 -12.48772 -12.44232 -12.25881 -12.17912 -12.11125 -11.94436 -11.81636 -11.73558 -11.41363 -11.37821 -10.90148 -10.82263 -10.69686 -10.50683 -10.48658 -9.28769 -8.14078 -6.21182 1.40972 1.41673 1.52235 2.43772 2.85798 3.19816 3.24408 3.76516 3.94083 4.01315 4.12045 4.16824 4.22461 4.30890 4.35086 4.39337 4.50020 4.66953 4.68338 4.76938 4.81550 4.84631 4.87294 4.90810 4.93823 4.97271 4.97762 5.08541 5.10850 5.14402 5.21165 5.22188 5.22929 5.27607 5.38808 5.44563 5.51659 5.53829 5.53860 5.58457 5.59982 5.66240 5.87355 5.92715 6.12072 6.37189 6.56183 6.93982 7.46163 8.98436 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.045323 B = 0.002921 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.643924 B = 9584.601460 C = 9625.489625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.038 4.038 3 C -0.136 4.136 4 C -0.139 4.139 5 C -0.131 4.131 6 H 0.098 0.902 7 C -0.177 4.177 8 C -0.143 4.143 9 H 0.107 0.893 10 C 0.091 3.909 11 N -0.680 5.680 12 C 0.082 3.918 13 C -0.055 4.055 14 C -0.106 4.106 15 C -0.121 4.121 16 C 0.039 3.961 17 C -0.514 4.514 18 H 0.067 0.933 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.957 3.043 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.262 1.262 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.025 0.975 37 H 0.063 0.937 38 H 0.344 0.656 39 H 0.015 0.985 40 H 0.054 0.946 41 H 0.067 0.933 42 H 0.029 0.971 43 H 0.039 0.961 44 H 0.047 0.953 45 H 0.035 0.965 46 H 0.068 0.932 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.228 22.022 -8.028 25.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.194 4.194 4 C -0.196 4.196 5 C -0.150 4.150 6 H 0.116 0.884 7 C -0.213 4.213 8 C -0.162 4.162 9 H 0.125 0.875 10 C -0.038 4.038 11 N -0.312 5.312 12 C -0.047 4.047 13 C -0.055 4.055 14 C -0.163 4.163 15 C -0.179 4.179 16 C 0.002 3.998 17 C -0.552 4.552 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.580 5.580 21 Si 0.782 3.218 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.186 1.186 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.082 0.918 38 H 0.164 0.836 39 H 0.033 0.967 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.048 0.952 43 H 0.058 0.942 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.086 0.914 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -8.881 21.819 -8.586 25.073 hybrid contribution 0.391 -1.044 1.325 1.732 sum -8.489 20.775 -7.261 23.588 Atomic orbital electron populations 1.21989 0.94244 1.01712 1.02074 1.20067 0.95633 0.95168 0.92949 1.21821 1.00875 0.94629 1.02031 1.21836 1.00844 1.00107 0.96826 1.22474 0.99172 0.95811 0.97552 0.88391 1.23382 0.99306 1.02765 0.95893 1.22227 1.01637 0.89717 1.02598 0.87479 1.21489 0.97275 0.87331 0.97711 1.60472 1.05881 1.05231 1.59575 1.21805 0.95305 0.92116 0.95484 1.20491 0.95883 0.92832 0.96333 1.21497 1.00171 1.00048 0.94622 1.21676 0.96323 1.01444 0.98433 1.19013 0.93449 0.93926 0.93429 1.21622 1.03489 0.93178 1.36883 0.91534 1.25941 0.95324 1.03494 0.95457 1.70116 1.13564 1.32849 1.41504 0.85560 0.79074 0.79615 0.77507 1.20110 1.21233 1.18596 0.91930 0.92146 0.92954 0.92816 0.92003 0.92434 0.93217 0.92085 0.93105 0.87335 0.89359 0.95710 0.91813 0.83601 0.96670 0.92751 0.91378 0.95220 0.94191 0.93395 0.94545 0.91367 0.99857 0.99844 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 7.07 71.98 0.51 -1.39 16 2 C -0.04 -0.55 0.88 -52.18 -0.05 -0.60 16 3 C -0.14 -1.72 8.46 71.98 0.61 -1.11 16 4 C -0.14 -2.17 8.31 71.98 0.60 -1.57 16 5 C -0.13 -2.22 4.87 -10.77 -0.05 -2.27 16 6 H 0.10 1.72 8.11 -2.38 -0.02 1.70 16 7 C -0.18 -2.95 9.22 30.62 0.28 -2.67 16 8 C -0.14 -2.82 4.80 -10.79 -0.05 -2.87 16 9 H 0.11 2.25 7.07 -2.39 -0.02 2.24 16 10 C 0.09 2.21 5.97 86.30 0.51 2.72 16 11 N -0.68 -19.17 5.71 -513.87 -2.94 -22.11 16 12 C 0.08 2.90 4.65 86.30 0.40 3.31 16 13 C -0.05 -2.23 0.60 -52.18 -0.03 -2.26 16 14 C -0.11 -4.11 8.06 71.98 0.58 -3.53 16 15 C -0.12 -4.44 7.89 71.98 0.57 -3.88 16 16 C 0.04 2.08 4.04 29.85 0.12 2.20 16 17 C -0.51 -28.77 7.65 25.60 0.20 -28.57 16 18 H 0.07 3.56 5.68 -2.91 -0.02 3.55 16 19 C -0.01 -0.32 5.46 84.66 0.46 0.14 16 20 N -0.94 -58.08 13.29 21.45 0.28 -57.79 16 21 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 H 0.06 0.77 6.98 -2.39 -0.02 0.75 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.05 0.76 7.07 -2.38 -0.02 0.74 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.88 7.29 -2.39 -0.02 0.86 16 32 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.11 1.60 5.85 -2.39 -0.01 1.59 16 35 H 0.09 1.50 8.03 -2.39 -0.02 1.48 16 36 H 0.02 0.61 7.88 -2.39 -0.02 0.59 16 37 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.34 9.08 6.77 -89.70 -0.61 8.47 16 39 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.07 2.28 7.60 -2.39 -0.02 2.26 16 42 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 44 H 0.05 1.90 6.62 -2.39 -0.02 1.89 16 45 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 2.02 6.57 -2.39 -0.02 2.00 16 47 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 48 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 49 H 0.26 15.18 8.31 -92.70 -0.77 14.41 16 Total: -1.00 -61.94 370.07 4.31 -57.64 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.27 Total: 17.77 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 4.66 Total: -42.35 kcal Atomic # 7 Polarization: -77.25 SS G_CDS: -2.65 Total: -79.90 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -61.94 4.31 -57.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699838541.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.119 kcal (2) G-P(sol) polarization free energy of solvation -61.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds