Wall clock time and date at job start Mon Mar 30 2020 06:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46900 * 2 1 4 4 C 1.53001 * 109.46658 * 240.00347 * 2 1 3 5 5 C 1.52989 * 109.47436 * 120.00000 * 2 1 3 6 6 H 1.09004 * 115.56709 * 274.30959 * 5 2 1 7 7 C 1.53000 * 117.50008 * 128.62226 * 5 2 1 8 8 C 1.52997 * 60.00347 * 252.51154 * 7 5 2 9 9 H 1.08997 * 117.50044 * 107.48590 * 8 7 5 10 10 C 1.53001 * 117.51528 * 252.52230 * 8 7 5 11 11 N 1.46903 * 109.46784 * 243.62107 * 10 8 7 12 12 C 1.46895 * 111.00260 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47609 * 180.02562 * 12 11 10 14 14 C 1.53009 * 109.46740 * 299.99742 * 13 12 11 15 15 C 1.52997 * 109.47422 * 59.99349 * 13 12 11 16 16 C 1.52995 * 109.47676 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47440 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00184 * 0.02562 * 17 16 13 19 19 C 1.37881 * 120.00011 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99742 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46862 * 90.00019 * 21 19 17 23 23 H 1.48496 * 109.47073 * 210.00150 * 21 19 17 24 24 H 1.48498 * 109.47095 * 330.00426 * 21 19 17 25 25 H 1.09001 * 109.47295 * 299.99779 * 1 2 3 26 26 H 1.09001 * 109.47711 * 59.99982 * 1 2 3 27 27 H 1.09006 * 109.46996 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47066 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46953 * 300.00482 * 3 2 1 30 30 H 1.09001 * 109.46966 * 60.00020 * 3 2 1 31 31 H 1.08996 * 109.47619 * 299.99274 * 4 2 1 32 32 H 1.09003 * 109.47500 * 60.00196 * 4 2 1 33 33 H 1.09000 * 109.46974 * 179.97438 * 4 2 1 34 34 H 1.09002 * 117.49696 * 0.02562 * 7 5 2 35 35 H 1.09002 * 117.50343 * 145.02258 * 7 5 2 36 36 H 1.08989 * 109.47304 * 3.62247 * 10 8 7 37 37 H 1.09003 * 109.47230 * 123.62620 * 10 8 7 38 38 H 1.00898 * 111.00281 * 303.95970 * 11 10 8 39 39 H 1.09007 * 109.47242 * 300.00089 * 12 11 10 40 40 H 1.08994 * 109.47372 * 59.99943 * 12 11 10 41 41 H 1.09006 * 109.46835 * 59.99999 * 14 13 12 42 42 H 1.08996 * 109.47014 * 179.97438 * 14 13 12 43 43 H 1.08991 * 109.47302 * 300.00043 * 14 13 12 44 44 H 1.09007 * 109.46815 * 60.00907 * 15 13 12 45 45 H 1.08996 * 109.47466 * 180.02562 * 15 13 12 46 46 H 1.08997 * 109.47420 * 300.01094 * 15 13 12 47 47 H 1.09003 * 109.47150 * 300.00222 * 16 13 12 48 48 H 1.09006 * 109.46992 * 59.99131 * 16 13 12 49 49 H 0.97001 * 119.99669 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2491 6 1 2.1272 -0.1061 2.1448 7 6 3.0742 -1.8312 1.0512 8 6 1.6358 -2.1852 1.4342 9 1 1.0065 -2.6345 0.6659 10 6 1.3843 -2.6735 2.8622 11 7 0.8946 -4.0581 2.8271 12 6 0.6410 -4.5614 4.1836 13 6 0.1341 -6.0029 4.1064 14 6 -1.1632 -6.0445 3.2962 15 6 1.1883 -6.8786 3.4263 16 6 -0.1306 -6.5269 5.5192 17 6 -0.6305 -7.9465 5.4431 18 1 -0.7473 -8.4271 4.4830 19 6 -0.9378 -8.6322 6.5992 20 7 -0.7951 -8.0470 7.7683 21 14 -1.5568 -10.3921 6.5048 22 1 -0.4031 -11.3257 6.5529 23 1 -2.4597 -10.6614 7.6526 24 1 -2.2995 -10.5881 5.2340 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7208 -1.2496 34 1 3.3915 -2.0474 0.0311 35 1 3.8417 -1.9465 1.8166 36 1 2.3139 -2.6312 3.4297 37 1 0.6388 -2.0364 3.3380 38 1 0.0685 -4.1350 2.2529 39 1 1.5653 -4.5322 4.7607 40 1 -0.1098 -3.9374 4.6683 41 1 -0.9750 -5.6710 2.2896 42 1 -1.5242 -7.0715 3.2408 43 1 -1.9143 -5.4207 3.7806 44 1 2.1126 -6.8490 4.0035 45 1 0.8270 -7.9054 3.3708 46 1 1.3765 -6.5051 2.4197 47 1 0.7933 -6.4971 6.0968 48 1 -0.8819 -5.9029 6.0033 49 1 -1.0109 -8.5295 8.5816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699838544.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:41 Heat of formation + Delta-G solvation = -14.128306 kcal Electronic energy + Delta-G solvation = -20869.160868 eV Core-core repulsion = 18023.510728 eV Total energy + Delta-G solvation = -2845.650140 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.48586 -37.53819 -35.07074 -33.25167 -31.94442 -27.77463 -27.50750 -27.16798 -26.39099 -26.25442 -24.15869 -22.98867 -22.04607 -20.71552 -18.53510 -17.78656 -16.21634 -16.12769 -15.41189 -14.85021 -14.66321 -14.31104 -14.00493 -13.88420 -13.38541 -13.29983 -12.85683 -12.59972 -12.45897 -12.38442 -11.98363 -11.93043 -11.90427 -11.75564 -11.42351 -11.15496 -11.06680 -10.93484 -10.85954 -10.74440 -10.73081 -10.46662 -10.24113 -10.12113 -9.96091 -9.80836 -9.62168 -8.97346 -8.79559 -8.29444 -8.00158 -5.94032 -3.93973 3.34941 3.41323 3.44148 3.67222 4.25870 4.50217 4.58714 4.65864 4.73872 4.91502 5.04745 5.11515 5.31481 5.40605 5.41803 5.43688 5.46040 5.54354 5.57766 5.68630 5.68970 5.72782 5.78510 5.80795 5.83811 5.89312 5.93575 6.02557 6.08771 6.14014 6.18685 6.29249 6.31519 6.38426 6.55109 6.70573 6.83208 6.86710 7.24608 7.27971 7.29920 7.46281 7.71750 7.75760 7.89096 8.06591 8.51215 9.11495 9.68658 11.17721 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.045397 B = 0.002921 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.626284 B = 9582.378447 C = 9625.863129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.038 4.038 3 C -0.138 4.138 4 C -0.145 4.145 5 C -0.144 4.144 6 H 0.100 0.900 7 C -0.173 4.173 8 C -0.135 4.135 9 H 0.104 0.896 10 C 0.088 3.912 11 N -0.684 5.684 12 C 0.070 3.930 13 C -0.058 4.058 14 C -0.129 4.129 15 C -0.115 4.115 16 C 0.033 3.967 17 C -0.506 4.506 18 H 0.059 0.941 19 C 0.054 3.946 20 N -0.898 5.898 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.027 0.973 38 H 0.337 0.663 39 H 0.065 0.935 40 H 0.022 0.978 41 H 0.033 0.967 42 H 0.064 0.936 43 H 0.039 0.961 44 H 0.038 0.962 45 H 0.053 0.947 46 H 0.042 0.958 47 H 0.015 0.985 48 H 0.012 0.988 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.995 16.709 -15.725 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.038 4.038 3 C -0.195 4.195 4 C -0.202 4.202 5 C -0.163 4.163 6 H 0.118 0.882 7 C -0.210 4.210 8 C -0.153 4.153 9 H 0.122 0.878 10 C -0.041 4.041 11 N -0.315 5.315 12 C -0.059 4.059 13 C -0.059 4.059 14 C -0.186 4.186 15 C -0.173 4.173 16 C -0.004 4.004 17 C -0.544 4.544 18 H 0.077 0.923 19 C -0.147 4.147 20 N -0.538 5.538 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.199 1.199 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.109 0.891 36 H 0.087 0.913 37 H 0.045 0.955 38 H 0.156 0.844 39 H 0.083 0.917 40 H 0.040 0.960 41 H 0.052 0.948 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.061 0.939 47 H 0.033 0.967 48 H 0.031 0.969 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.599 16.406 -15.568 23.299 hybrid contribution -1.142 -0.495 0.473 1.331 sum 4.457 15.912 -15.095 22.381 Atomic orbital electron populations 1.21847 0.94423 1.02011 1.01392 1.20043 0.95356 0.94929 0.93509 1.21838 1.01007 0.95162 1.01511 1.22005 1.01092 1.00427 0.96670 1.22464 1.04147 0.90743 0.98918 0.88177 1.23244 0.92541 1.02514 1.02709 1.22313 0.98396 0.96431 0.98185 0.87815 1.21499 0.99641 0.89186 0.93810 1.60549 1.38180 1.19018 1.13801 1.22100 0.99257 0.96396 0.88121 1.20621 0.94334 0.91851 0.99046 1.21767 0.97285 1.02317 0.97223 1.21591 0.97634 0.99443 0.98604 1.19126 0.96591 0.95675 0.89022 1.21245 1.42809 0.98033 0.92328 0.92292 1.25022 0.96087 0.97912 0.95632 1.69971 1.49528 1.36961 0.97357 0.86661 0.78739 0.85506 0.77498 1.20782 1.21410 1.19948 0.92686 0.92943 0.92442 0.92636 0.92821 0.92723 0.92381 0.92914 0.92294 0.88466 0.89124 0.91317 0.95519 0.84402 0.91697 0.95991 0.94818 0.91743 0.94151 0.94235 0.92760 0.93862 0.96714 0.96947 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.14 8.31 37.16 0.31 -0.83 16 2 C -0.04 -0.31 0.88 -154.51 -0.14 -0.45 16 3 C -0.14 -1.00 8.46 37.16 0.31 -0.69 16 4 C -0.14 -1.12 7.07 37.16 0.26 -0.86 16 5 C -0.14 -1.33 4.87 -90.62 -0.44 -1.77 16 6 H 0.10 0.95 8.11 -51.93 -0.42 0.53 16 7 C -0.17 -1.70 9.21 -26.73 -0.25 -1.94 16 8 C -0.13 -1.44 4.80 -90.62 -0.44 -1.88 16 9 H 0.10 1.14 7.06 -51.93 -0.37 0.77 16 10 C 0.09 1.12 5.97 -3.82 -0.02 1.10 16 11 N -0.68 -10.17 5.71 -113.78 -0.65 -10.82 16 12 C 0.07 1.24 4.65 -3.83 -0.02 1.22 16 13 C -0.06 -1.18 0.60 -154.51 -0.09 -1.27 16 14 C -0.13 -2.43 7.89 37.16 0.29 -2.13 16 15 C -0.12 -2.28 8.06 37.16 0.30 -1.98 16 16 C 0.03 0.85 4.04 -27.89 -0.11 0.74 16 17 C -0.51 -13.98 7.65 -34.44 -0.26 -14.25 16 18 H 0.06 1.59 5.68 -52.49 -0.30 1.29 16 19 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 20 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 21 Si 0.89 21.77 29.54 -169.99 -5.02 16.75 16 22 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.50 7.29 -51.93 -0.38 0.12 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.48 7.07 -51.93 -0.37 0.11 16 32 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.44 6.98 -51.93 -0.36 0.08 16 34 H 0.10 0.89 5.85 -51.93 -0.30 0.59 16 35 H 0.09 0.91 8.03 -51.93 -0.42 0.49 16 36 H 0.07 0.90 7.88 -51.94 -0.41 0.49 16 37 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.34 4.81 6.76 -39.29 -0.27 4.54 16 39 H 0.06 1.20 8.14 -51.92 -0.42 0.77 16 40 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 42 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.79 8.14 -51.92 -0.42 0.37 16 45 H 0.05 1.14 6.62 -51.93 -0.34 0.80 16 46 H 0.04 0.77 7.60 -51.93 -0.39 0.38 16 47 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.01 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -28.79 370.05 -9.39 -38.18 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -9.64 Total: 0.24 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -0.39 Total: -23.55 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: 0.09 Total: -37.20 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -28.79 -9.39 -38.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699838544.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.050 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds