Wall clock time and date at job start Mon Mar 30 2020 06:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46900 * 2 1 4 4 C 1.53001 * 109.46658 * 240.00347 * 2 1 3 5 5 C 1.52989 * 109.47436 * 120.00000 * 2 1 3 6 6 H 1.09004 * 115.56709 * 274.30959 * 5 2 1 7 7 C 1.53000 * 117.50008 * 128.62226 * 5 2 1 8 8 C 1.52997 * 60.00347 * 252.51154 * 7 5 2 9 9 H 1.08997 * 117.50044 * 107.48590 * 8 7 5 10 10 C 1.53001 * 117.51528 * 252.52230 * 8 7 5 11 11 N 1.46903 * 109.46784 * 243.62107 * 10 8 7 12 12 C 1.46895 * 111.00260 * 180.02562 * 11 10 8 13 13 C 1.52996 * 109.47609 * 180.02562 * 12 11 10 14 14 C 1.53009 * 109.46740 * 299.99742 * 13 12 11 15 15 C 1.52997 * 109.47422 * 59.99349 * 13 12 11 16 16 C 1.52995 * 109.47676 * 180.02562 * 13 12 11 17 17 C 1.50697 * 109.47440 * 179.97438 * 16 13 12 18 18 H 1.08001 * 120.00184 * 0.02562 * 17 16 13 19 19 C 1.37881 * 120.00011 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99742 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 120.00106 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.46862 * 90.00019 * 21 19 17 23 23 H 1.48496 * 109.47073 * 210.00150 * 21 19 17 24 24 H 1.48498 * 109.47095 * 330.00426 * 21 19 17 25 25 H 1.09001 * 109.47295 * 299.99779 * 1 2 3 26 26 H 1.09001 * 109.47711 * 59.99982 * 1 2 3 27 27 H 1.09006 * 109.46996 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47066 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46953 * 300.00482 * 3 2 1 30 30 H 1.09001 * 109.46966 * 60.00020 * 3 2 1 31 31 H 1.08996 * 109.47619 * 299.99274 * 4 2 1 32 32 H 1.09003 * 109.47500 * 60.00196 * 4 2 1 33 33 H 1.09000 * 109.46974 * 179.97438 * 4 2 1 34 34 H 1.09002 * 117.49696 * 0.02562 * 7 5 2 35 35 H 1.09002 * 117.50343 * 145.02258 * 7 5 2 36 36 H 1.08989 * 109.47304 * 3.62247 * 10 8 7 37 37 H 1.09003 * 109.47230 * 123.62620 * 10 8 7 38 38 H 1.00898 * 111.00281 * 303.95970 * 11 10 8 39 39 H 1.09007 * 109.47242 * 300.00089 * 12 11 10 40 40 H 1.08994 * 109.47372 * 59.99943 * 12 11 10 41 41 H 1.09006 * 109.46835 * 59.99999 * 14 13 12 42 42 H 1.08996 * 109.47014 * 179.97438 * 14 13 12 43 43 H 1.08991 * 109.47302 * 300.00043 * 14 13 12 44 44 H 1.09007 * 109.46815 * 60.00907 * 15 13 12 45 45 H 1.08996 * 109.47466 * 180.02562 * 15 13 12 46 46 H 1.08997 * 109.47420 * 300.01094 * 15 13 12 47 47 H 1.09003 * 109.47150 * 300.00222 * 16 13 12 48 48 H 1.09006 * 109.46992 * 59.99131 * 16 13 12 49 49 H 0.97001 * 119.99669 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 2.0400 -0.7212 1.2491 6 1 2.1272 -0.1061 2.1448 7 6 3.0742 -1.8312 1.0512 8 6 1.6358 -2.1852 1.4342 9 1 1.0065 -2.6345 0.6659 10 6 1.3843 -2.6735 2.8622 11 7 0.8946 -4.0581 2.8271 12 6 0.6410 -4.5614 4.1836 13 6 0.1341 -6.0029 4.1064 14 6 -1.1632 -6.0445 3.2962 15 6 1.1883 -6.8786 3.4263 16 6 -0.1306 -6.5269 5.5192 17 6 -0.6305 -7.9465 5.4431 18 1 -0.7473 -8.4271 4.4830 19 6 -0.9378 -8.6322 6.5992 20 7 -0.7951 -8.0470 7.7683 21 14 -1.5568 -10.3921 6.5048 22 1 -0.4031 -11.3257 6.5529 23 1 -2.4597 -10.6614 7.6526 24 1 -2.2995 -10.5881 5.2340 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1299 1.4426 -0.0005 29 1 1.6765 1.9564 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 -1.7489 -1.2494 32 1 1.6765 -0.2073 -2.1393 33 1 3.1299 -0.7208 -1.2496 34 1 3.3915 -2.0474 0.0311 35 1 3.8417 -1.9465 1.8166 36 1 2.3139 -2.6312 3.4297 37 1 0.6388 -2.0364 3.3380 38 1 0.0685 -4.1350 2.2529 39 1 1.5653 -4.5322 4.7607 40 1 -0.1098 -3.9374 4.6683 41 1 -0.9750 -5.6710 2.2896 42 1 -1.5242 -7.0715 3.2408 43 1 -1.9143 -5.4207 3.7806 44 1 2.1126 -6.8490 4.0035 45 1 0.8270 -7.9054 3.3708 46 1 1.3765 -6.5051 2.4197 47 1 0.7933 -6.4971 6.0968 48 1 -0.8819 -5.9029 6.0033 49 1 -1.0109 -8.5295 8.5816 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699838544.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:40 Heat of formation + Delta-G solvation = -28.314697 kcal Electronic energy + Delta-G solvation = -20869.776036 eV Core-core repulsion = 18023.510728 eV Total energy + Delta-G solvation = -2846.265308 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.27100 -39.05774 -36.18904 -34.73412 -33.63018 -29.21255 -28.34820 -28.09152 -27.89348 -27.65769 -25.78267 -23.80146 -23.67657 -21.63324 -19.48384 -19.17761 -18.33207 -16.98505 -16.64560 -16.52317 -15.80061 -15.52019 -15.09245 -14.86366 -14.75892 -14.42573 -14.10627 -13.99118 -13.85808 -13.49557 -13.23335 -13.06285 -12.82899 -12.74959 -12.68193 -12.50276 -12.45449 -12.26022 -12.17568 -12.11986 -11.94899 -11.82006 -11.74557 -11.40764 -11.39121 -10.89449 -10.83913 -10.70433 -10.51082 -10.49683 -9.25153 -8.14078 -6.21186 1.40977 1.41664 1.52251 2.43786 2.84815 3.19790 3.29912 3.77488 3.92260 3.98026 4.12874 4.17973 4.22364 4.32451 4.35299 4.39352 4.51568 4.66778 4.68201 4.75699 4.80937 4.83759 4.85856 4.87217 4.95731 4.96461 4.97789 5.08466 5.10142 5.14435 5.21169 5.22130 5.22477 5.27997 5.38540 5.44650 5.51618 5.52699 5.53861 5.58473 5.58856 5.66273 5.87309 5.92704 6.11441 6.37142 6.55453 6.93981 7.46145 8.98440 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.045397 B = 0.002921 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.626284 B = 9582.378447 C = 9625.863129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.038 4.038 3 C -0.136 4.136 4 C -0.143 4.143 5 C -0.133 4.133 6 H 0.098 0.902 7 C -0.172 4.172 8 C -0.141 4.141 9 H 0.105 0.895 10 C 0.091 3.909 11 N -0.679 5.679 12 C 0.082 3.918 13 C -0.055 4.055 14 C -0.122 4.122 15 C -0.106 4.106 16 C 0.039 3.961 17 C -0.514 4.514 18 H 0.067 0.933 19 C -0.006 4.006 20 N -0.939 5.939 21 Si 0.957 3.043 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.262 1.262 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.060 0.940 33 H 0.061 0.939 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.026 0.974 38 H 0.344 0.656 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.036 0.964 44 H 0.028 0.972 45 H 0.039 0.961 46 H 0.067 0.933 47 H -0.017 1.017 48 H -0.017 1.017 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.977 17.001 -17.988 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.038 4.038 3 C -0.194 4.194 4 C -0.200 4.200 5 C -0.152 4.152 6 H 0.116 0.884 7 C -0.209 4.209 8 C -0.159 4.159 9 H 0.123 0.877 10 C -0.038 4.038 11 N -0.311 5.311 12 C -0.047 4.047 13 C -0.055 4.055 14 C -0.179 4.179 15 C -0.163 4.163 16 C 0.002 3.998 17 C -0.552 4.552 18 H 0.085 0.915 19 C -0.202 4.202 20 N -0.580 5.580 21 Si 0.783 3.217 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.186 1.186 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.124 0.876 35 H 0.105 0.895 36 H 0.081 0.919 37 H 0.044 0.956 38 H 0.163 0.837 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.086 0.914 42 H 0.066 0.934 43 H 0.055 0.945 44 H 0.048 0.952 45 H 0.058 0.942 46 H 0.086 0.914 47 H 0.001 0.999 48 H 0.002 0.998 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 5.582 16.706 -17.856 25.082 hybrid contribution -1.109 -0.521 1.185 1.705 sum 4.473 16.185 -16.671 23.662 Atomic orbital electron populations 1.21843 0.94446 1.01658 1.01684 1.20071 0.95312 0.95383 0.93066 1.21824 1.01093 0.94536 1.01924 1.21988 1.01237 1.00098 0.96722 1.22503 1.03206 0.90055 0.99436 0.88386 1.23291 0.91970 1.02509 1.03082 1.22176 0.99289 0.97758 0.96723 0.87688 1.21498 0.99164 0.87848 0.95331 1.60486 1.38319 1.20553 1.11772 1.21805 0.98351 0.94792 0.89777 1.20490 0.95713 0.93381 0.95952 1.21680 0.96049 1.01400 0.98756 1.21493 0.96709 0.98487 0.99637 1.19012 0.93964 0.94980 0.91857 1.21621 1.42046 0.98896 0.92605 0.91537 1.25942 0.96468 1.02506 0.95304 1.70115 1.50900 1.38885 0.98135 0.85558 0.78291 0.80009 0.77891 1.20120 1.21229 1.18593 0.93054 0.92037 0.93096 0.92500 0.91982 0.92790 0.92947 0.92110 0.92047 0.87585 0.89466 0.91880 0.95579 0.83672 0.92785 0.96629 0.91374 0.93397 0.94516 0.95246 0.94194 0.91382 0.99874 0.99830 0.93165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.02 8.31 71.98 0.60 -1.42 16 2 C -0.04 -0.54 0.88 -52.18 -0.05 -0.59 16 3 C -0.14 -1.70 8.46 71.98 0.61 -1.09 16 4 C -0.14 -1.89 7.07 71.98 0.51 -1.39 16 5 C -0.13 -2.24 4.87 -10.80 -0.05 -2.29 16 6 H 0.10 1.71 8.11 -2.38 -0.02 1.69 16 7 C -0.17 -3.06 9.21 30.59 0.28 -2.78 16 8 C -0.14 -2.78 4.80 -10.79 -0.05 -2.83 16 9 H 0.11 2.08 7.06 -2.39 -0.02 2.07 16 10 C 0.09 2.20 5.97 86.30 0.51 2.71 16 11 N -0.68 -19.16 5.71 -513.90 -2.94 -22.09 16 12 C 0.08 2.90 4.65 86.30 0.40 3.30 16 13 C -0.05 -2.23 0.60 -52.18 -0.03 -2.26 16 14 C -0.12 -4.44 7.89 71.99 0.57 -3.87 16 15 C -0.11 -4.11 8.06 71.98 0.58 -3.53 16 16 C 0.04 2.08 4.04 29.85 0.12 2.20 16 17 C -0.51 -28.76 7.65 25.60 0.20 -28.57 16 18 H 0.07 3.56 5.68 -2.91 -0.02 3.55 16 19 C -0.01 -0.33 5.46 84.66 0.46 0.14 16 20 N -0.94 -58.07 13.29 21.45 0.28 -57.79 16 21 Si 0.96 44.82 29.54 68.60 2.03 46.85 16 22 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.29 -13.25 7.11 99.48 0.71 -12.55 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 H 0.05 0.77 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.05 0.80 7.29 -2.38 -0.02 0.79 16 28 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.75 7.07 -2.39 -0.02 0.74 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.78 6.98 -2.39 -0.02 0.76 16 34 H 0.11 1.71 5.85 -2.39 -0.01 1.69 16 35 H 0.09 1.62 8.03 -2.39 -0.02 1.60 16 36 H 0.06 1.60 7.88 -2.39 -0.02 1.59 16 37 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.34 8.98 6.76 -89.70 -0.61 8.38 16 39 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 41 H 0.07 2.01 6.57 -2.38 -0.02 1.99 16 42 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 43 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 45 H 0.04 1.64 6.62 -2.39 -0.02 1.62 16 46 H 0.07 2.29 7.60 -2.39 -0.02 2.27 16 47 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 48 H -0.02 -0.97 8.14 -2.38 -0.02 -0.98 16 49 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 Total: -1.00 -62.08 370.05 4.30 -57.78 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.27 Total: 17.51 kcal Atomic # 6 Polarization: -46.91 SS G_CDS: 4.66 Total: -42.26 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -2.65 Total: -79.88 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -62.08 4.30 -57.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699838544.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.464 kcal (2) G-P(sol) polarization free energy of solvation -62.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds