Wall clock time and date at job start Mon Mar 30 2020 06:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47116 * 2 1 4 4 C 1.52998 * 109.46947 * 240.00440 * 2 1 3 5 5 C 1.52997 * 109.46995 * 120.00135 * 2 1 3 6 6 H 1.08997 * 115.54941 * 196.73938 * 5 2 1 7 7 C 1.53000 * 117.52094 * 342.44422 * 5 2 1 8 8 C 1.53000 * 60.00076 * 107.47843 * 7 5 2 9 9 H 1.09000 * 117.51831 * 107.48143 * 8 7 5 10 10 C 1.52998 * 117.49724 * 252.50980 * 8 7 5 11 11 N 1.46900 * 109.47014 * 230.70622 * 10 8 7 12 12 C 1.46900 * 111.00127 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46991 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47188 * 60.00188 * 13 12 11 15 15 C 1.52996 * 109.47102 * 299.99664 * 13 12 11 16 16 C 1.53007 * 109.46833 * 180.02562 * 13 12 11 17 17 C 1.50700 * 109.46901 * 180.02562 * 16 13 12 18 18 H 1.08004 * 120.00173 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99767 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99931 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99963 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47162 * 90.00075 * 21 19 17 23 23 H 1.48492 * 109.47470 * 329.99772 * 21 19 17 24 24 H 1.48501 * 109.47219 * 209.99677 * 21 19 17 25 25 H 1.09004 * 109.46707 * 285.41226 * 1 2 3 26 26 H 1.09001 * 109.46668 * 45.40765 * 1 2 3 27 27 H 1.08997 * 109.46889 * 165.41043 * 1 2 3 28 28 H 1.09000 * 109.47205 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47569 * 300.00311 * 3 2 1 30 30 H 1.09000 * 109.46894 * 60.00353 * 3 2 1 31 31 H 1.09006 * 109.47042 * 285.21342 * 4 2 1 32 32 H 1.09000 * 109.47394 * 45.20688 * 4 2 1 33 33 H 1.08996 * 109.47078 * 165.21076 * 4 2 1 34 34 H 1.09002 * 117.49619 * 359.97438 * 7 5 2 35 35 H 1.09000 * 117.49549 * 214.97339 * 7 5 2 36 36 H 1.08997 * 109.46972 * 110.71275 * 10 8 7 37 37 H 1.08995 * 109.47607 * 350.70532 * 10 8 7 38 38 H 1.00904 * 110.99983 * 303.95771 * 11 10 8 39 39 H 1.09002 * 109.47243 * 60.00431 * 12 11 10 40 40 H 1.08998 * 109.47043 * 300.00293 * 12 11 10 41 41 H 1.09006 * 109.46693 * 179.97438 * 14 13 12 42 42 H 1.08994 * 109.46878 * 299.99591 * 14 13 12 43 43 H 1.09004 * 109.46806 * 59.99934 * 14 13 12 44 44 H 1.08989 * 109.47975 * 300.00097 * 15 13 12 45 45 H 1.09003 * 109.47079 * 60.00877 * 15 13 12 46 46 H 1.09011 * 109.47019 * 179.97438 * 15 13 12 47 47 H 1.09000 * 109.47390 * 59.99754 * 16 13 12 48 48 H 1.09002 * 109.46788 * 299.99548 * 16 13 12 49 49 H 0.97003 * 120.00248 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.0846 -0.5407 1.5028 7 6 1.0560 -0.9157 2.4045 8 6 1.4715 -2.1108 1.5442 9 1 2.1422 -2.8444 1.9916 10 6 0.4361 -2.6723 0.5678 11 7 0.3293 -4.1260 0.7499 12 6 -0.6577 -4.7012 -0.1737 13 6 -0.7411 -6.2131 0.0458 14 6 -1.1665 -6.4964 1.4880 15 6 0.6287 -6.8426 -0.2150 16 6 -1.7687 -6.8122 -0.9166 17 6 -1.8513 -8.3013 -0.7000 18 1 -1.2325 -8.7732 0.0489 19 6 -2.7170 -9.0611 -1.4578 20 7 -2.7887 -10.3607 -1.2692 21 14 -3.7877 -8.2448 -2.7525 22 1 -3.0656 -8.2225 -4.0499 23 1 -4.0968 -6.8539 -2.3341 24 1 -5.0521 -9.0090 -2.9029 25 1 -0.3633 0.2731 0.9908 26 1 -0.3633 0.7215 -0.7318 27 1 -0.3633 -0.9945 -0.2589 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.9069 -1.7962 -1.1280 32 1 1.4785 -0.3815 -2.1196 33 1 3.0979 -0.4997 -1.3903 34 1 0.0450 -0.5293 2.2749 35 1 1.4532 -0.8629 3.4182 36 1 0.7461 -2.4561 -0.4545 37 1 -0.5322 -2.2101 0.7594 38 1 1.2283 -4.5711 0.6410 39 1 -0.3550 -4.4990 -1.2011 40 1 -1.6337 -4.2530 0.0124 41 1 -1.2263 -7.5735 1.6441 42 1 -0.4341 -6.0697 2.1732 43 1 -2.1425 -6.0479 1.6737 44 1 0.9317 -6.6409 -1.2423 45 1 1.3611 -6.4159 0.4704 46 1 0.5694 -7.9197 -0.0582 47 1 -1.4654 -6.6103 -1.9439 48 1 -2.7448 -6.3637 -0.7312 49 1 -3.3980 -10.8953 -1.8021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000699838547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:43 Heat of formation + Delta-G solvation = 10.294456 kcal Electronic energy + Delta-G solvation = -21410.682949 eV Core-core repulsion = 18566.091859 eV Total energy + Delta-G solvation = -2844.591090 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.98023 -37.56679 -34.65671 -33.46909 -32.03186 -28.29717 -27.64805 -27.52612 -26.44125 -26.31053 -24.11430 -23.01081 -21.73551 -20.70059 -18.55197 -17.72864 -16.77071 -16.17455 -15.44167 -15.31848 -14.69396 -14.22394 -13.98856 -13.90739 -13.54835 -13.15182 -12.90271 -12.65408 -12.58945 -12.36399 -12.29762 -12.14439 -11.90862 -11.55732 -11.44111 -11.10226 -11.05173 -10.95228 -10.83597 -10.77155 -10.54687 -10.47169 -10.31119 -10.04885 -9.84261 -9.72969 -9.62871 -9.23862 -8.87157 -8.47727 -8.02016 -5.98038 -3.93975 3.33322 3.41132 3.44929 3.63984 4.31917 4.41220 4.50119 4.62735 4.71585 4.93243 4.98182 5.07500 5.29913 5.35129 5.37992 5.41262 5.46499 5.50463 5.55206 5.61679 5.65725 5.71448 5.72909 5.78304 5.80820 5.89280 5.91557 5.96789 6.09240 6.18249 6.19078 6.24670 6.29350 6.30224 6.45498 6.63235 6.72874 6.83513 7.11656 7.17565 7.22539 7.36020 7.37656 7.50065 7.69224 7.87938 8.62225 9.08122 9.65223 11.15151 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030492 B = 0.003673 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.052556 B = 7621.171009 C = 8043.127375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.036 4.036 3 C -0.137 4.137 4 C -0.150 4.150 5 C -0.144 4.144 6 H 0.100 0.900 7 C -0.178 4.178 8 C -0.137 4.137 9 H 0.105 0.895 10 C 0.072 3.928 11 N -0.686 5.686 12 C 0.068 3.932 13 C -0.049 4.049 14 C -0.117 4.117 15 C -0.130 4.130 16 C -0.004 4.004 17 C -0.506 4.506 18 H 0.078 0.922 19 C 0.064 3.936 20 N -0.906 5.906 21 Si 0.875 3.125 22 H -0.279 1.279 23 H -0.267 1.267 24 H -0.289 1.289 25 H 0.063 0.937 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.101 0.899 35 H 0.089 0.911 36 H 0.046 0.954 37 H 0.076 0.924 38 H 0.338 0.662 39 H 0.021 0.979 40 H 0.064 0.936 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.069 0.931 47 H 0.007 0.993 48 H 0.014 0.986 49 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.661 21.943 3.430 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.036 4.036 3 C -0.194 4.194 4 C -0.207 4.207 5 C -0.162 4.162 6 H 0.118 0.882 7 C -0.215 4.215 8 C -0.155 4.155 9 H 0.124 0.876 10 C -0.056 4.056 11 N -0.318 5.318 12 C -0.061 4.061 13 C -0.049 4.049 14 C -0.174 4.174 15 C -0.188 4.188 16 C -0.042 4.042 17 C -0.544 4.544 18 H 0.096 0.904 19 C -0.136 4.136 20 N -0.546 5.546 21 Si 0.703 3.297 22 H -0.205 1.205 23 H -0.191 1.191 24 H -0.216 1.216 25 H 0.082 0.918 26 H 0.070 0.930 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.157 0.843 39 H 0.039 0.961 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.088 0.912 47 H 0.026 0.974 48 H 0.033 0.967 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.118 21.838 3.886 23.982 hybrid contribution -0.141 0.389 -1.585 1.638 sum 8.977 22.227 2.301 24.081 Atomic orbital electron populations 1.22605 0.94824 1.03284 1.02114 1.19986 0.95357 0.94705 0.93548 1.21845 1.00686 0.95397 1.01522 1.22085 1.00757 1.01230 0.96631 1.22453 0.98224 0.99054 0.96478 0.88214 1.23282 1.00277 1.02628 0.95319 1.22300 1.01220 0.90590 1.01401 0.87643 1.22143 0.97872 0.89004 0.96567 1.60563 1.12797 1.02654 1.55787 1.22112 0.95263 0.96309 0.92390 1.20417 0.96374 0.90944 0.97192 1.21604 0.99414 1.01577 0.94833 1.21780 0.95503 1.02360 0.99127 1.19632 0.93772 0.97132 0.93688 1.21148 1.22725 0.90127 1.20401 0.90420 1.25019 0.96865 0.94680 0.97064 1.69911 1.38364 1.05072 1.41254 0.86847 0.80327 0.80034 0.82458 1.20528 1.19135 1.21560 0.91810 0.92965 0.90609 0.92858 0.92805 0.92696 0.91393 0.92746 0.92824 0.88053 0.89287 0.93692 0.90590 0.84289 0.96061 0.91744 0.92196 0.93624 0.94286 0.94202 0.94561 0.91204 0.97437 0.96745 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.53 7.19 37.16 0.27 -1.26 16 2 C -0.04 -0.31 0.76 -154.51 -0.12 -0.43 16 3 C -0.14 -1.04 8.37 37.16 0.31 -0.73 16 4 C -0.15 -1.33 8.21 37.16 0.31 -1.03 16 5 C -0.14 -1.29 5.03 -90.62 -0.46 -1.74 16 6 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 7 C -0.18 -1.66 9.40 -26.73 -0.25 -1.92 16 8 C -0.14 -1.41 5.80 -90.62 -0.53 -1.94 16 9 H 0.11 1.13 8.11 -51.93 -0.42 0.71 16 10 C 0.07 0.85 3.80 -3.83 -0.01 0.83 16 11 N -0.69 -9.61 5.70 -113.78 -0.65 -10.26 16 12 C 0.07 1.12 4.65 -3.82 -0.02 1.10 16 13 C -0.05 -0.95 0.60 -154.50 -0.09 -1.04 16 14 C -0.12 -2.28 8.07 37.16 0.30 -1.98 16 15 C -0.13 -2.41 7.89 37.16 0.29 -2.11 16 16 C 0.00 -0.10 3.11 -27.88 -0.09 -0.19 16 17 C -0.51 -14.05 8.20 -34.44 -0.28 -14.33 16 18 H 0.08 2.30 5.92 -52.48 -0.31 1.99 16 19 C 0.06 1.86 5.47 -17.82 -0.10 1.76 16 20 N -0.91 -27.94 13.96 55.43 0.77 -27.17 16 21 Si 0.88 21.90 27.47 -169.99 -4.67 17.23 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 24 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 25 H 0.06 0.55 5.54 -51.93 -0.29 0.26 16 26 H 0.05 0.44 8.06 -51.93 -0.42 0.02 16 27 H 0.08 0.74 4.10 -51.93 -0.21 0.53 16 28 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.67 5.07 -51.93 -0.26 0.41 16 32 H 0.05 0.47 8.06 -51.93 -0.42 0.05 16 33 H 0.05 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.10 0.94 5.48 -51.93 -0.28 0.66 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.52 4.02 -51.93 -0.21 0.31 16 37 H 0.08 0.92 6.15 -51.93 -0.32 0.60 16 38 H 0.34 4.58 6.76 -39.29 -0.27 4.31 16 39 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.06 1.29 6.62 -51.93 -0.34 0.95 16 42 H 0.04 0.80 7.60 -51.93 -0.39 0.41 16 43 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.04 0.57 6.57 -51.93 -0.34 0.23 16 46 H 0.07 1.46 6.62 -51.92 -0.34 1.12 16 47 H 0.01 0.18 7.57 -51.93 -0.39 -0.22 16 48 H 0.01 0.35 7.20 -51.93 -0.37 -0.03 16 49 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 353.52 15.07 5.33 5.33 Total: -1.00 -29.08 353.52 -8.67 -37.75 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -8.99 Total: 2.11 kcal Atomic # 6 Polarization: -24.53 SS G_CDS: -0.47 Total: -24.99 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.12 Total: -37.42 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.67 Total: 17.23 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.08 -8.67 -37.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699838547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.045 kcal (2) G-P(sol) polarization free energy of solvation -29.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds