Wall clock time and date at job start Mon Mar 30 2020 06:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53001 * 109.47116 * 2 1 4 4 C 1.52998 * 109.46947 * 240.00440 * 2 1 3 5 5 C 1.52997 * 109.46995 * 120.00135 * 2 1 3 6 6 H 1.08997 * 115.54941 * 196.73938 * 5 2 1 7 7 C 1.53000 * 117.52094 * 342.44422 * 5 2 1 8 8 C 1.53000 * 60.00076 * 107.47843 * 7 5 2 9 9 H 1.09000 * 117.51831 * 107.48143 * 8 7 5 10 10 C 1.52998 * 117.49724 * 252.50980 * 8 7 5 11 11 N 1.46900 * 109.47014 * 230.70622 * 10 8 7 12 12 C 1.46900 * 111.00127 * 180.02562 * 11 10 8 13 13 C 1.53001 * 109.46991 * 180.02562 * 12 11 10 14 14 C 1.53003 * 109.47188 * 60.00188 * 13 12 11 15 15 C 1.52996 * 109.47102 * 299.99664 * 13 12 11 16 16 C 1.53007 * 109.46833 * 180.02562 * 13 12 11 17 17 C 1.50700 * 109.46901 * 180.02562 * 16 13 12 18 18 H 1.08004 * 120.00173 * 359.97438 * 17 16 13 19 19 C 1.37879 * 119.99767 * 179.97438 * 17 16 13 20 20 N 1.31514 * 119.99931 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 119.99963 * 359.97438 * 19 17 16 22 22 H 1.48501 * 109.47162 * 90.00075 * 21 19 17 23 23 H 1.48492 * 109.47470 * 329.99772 * 21 19 17 24 24 H 1.48501 * 109.47219 * 209.99677 * 21 19 17 25 25 H 1.09004 * 109.46707 * 285.41226 * 1 2 3 26 26 H 1.09001 * 109.46668 * 45.40765 * 1 2 3 27 27 H 1.08997 * 109.46889 * 165.41043 * 1 2 3 28 28 H 1.09000 * 109.47205 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47569 * 300.00311 * 3 2 1 30 30 H 1.09000 * 109.46894 * 60.00353 * 3 2 1 31 31 H 1.09006 * 109.47042 * 285.21342 * 4 2 1 32 32 H 1.09000 * 109.47394 * 45.20688 * 4 2 1 33 33 H 1.08996 * 109.47078 * 165.21076 * 4 2 1 34 34 H 1.09002 * 117.49619 * 359.97438 * 7 5 2 35 35 H 1.09000 * 117.49549 * 214.97339 * 7 5 2 36 36 H 1.08997 * 109.46972 * 110.71275 * 10 8 7 37 37 H 1.08995 * 109.47607 * 350.70532 * 10 8 7 38 38 H 1.00904 * 110.99983 * 303.95771 * 11 10 8 39 39 H 1.09002 * 109.47243 * 60.00431 * 12 11 10 40 40 H 1.08998 * 109.47043 * 300.00293 * 12 11 10 41 41 H 1.09006 * 109.46693 * 179.97438 * 14 13 12 42 42 H 1.08994 * 109.46878 * 299.99591 * 14 13 12 43 43 H 1.09004 * 109.46806 * 59.99934 * 14 13 12 44 44 H 1.08989 * 109.47975 * 300.00097 * 15 13 12 45 45 H 1.09003 * 109.47079 * 60.00877 * 15 13 12 46 46 H 1.09011 * 109.47019 * 179.97438 * 15 13 12 47 47 H 1.09000 * 109.47390 * 59.99754 * 16 13 12 48 48 H 1.09002 * 109.46788 * 299.99548 * 16 13 12 49 49 H 0.97003 * 120.00248 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0401 -0.7213 1.2492 6 1 3.0846 -0.5407 1.5028 7 6 1.0560 -0.9157 2.4045 8 6 1.4715 -2.1108 1.5442 9 1 2.1422 -2.8444 1.9916 10 6 0.4361 -2.6723 0.5678 11 7 0.3293 -4.1260 0.7499 12 6 -0.6577 -4.7012 -0.1737 13 6 -0.7411 -6.2131 0.0458 14 6 -1.1665 -6.4964 1.4880 15 6 0.6287 -6.8426 -0.2150 16 6 -1.7687 -6.8122 -0.9166 17 6 -1.8513 -8.3013 -0.7000 18 1 -1.2325 -8.7732 0.0489 19 6 -2.7170 -9.0611 -1.4578 20 7 -2.7887 -10.3607 -1.2692 21 14 -3.7877 -8.2448 -2.7525 22 1 -3.0656 -8.2225 -4.0499 23 1 -4.0968 -6.8539 -2.3341 24 1 -5.0521 -9.0090 -2.9029 25 1 -0.3633 0.2731 0.9908 26 1 -0.3633 0.7215 -0.7318 27 1 -0.3633 -0.9945 -0.2589 28 1 3.1301 1.4425 -0.0005 29 1 1.6768 1.9564 -0.8899 30 1 1.6768 1.9563 0.8900 31 1 1.9069 -1.7962 -1.1280 32 1 1.4785 -0.3815 -2.1196 33 1 3.0979 -0.4997 -1.3903 34 1 0.0450 -0.5293 2.2749 35 1 1.4532 -0.8629 3.4182 36 1 0.7461 -2.4561 -0.4545 37 1 -0.5322 -2.2101 0.7594 38 1 1.2283 -4.5711 0.6410 39 1 -0.3550 -4.4990 -1.2011 40 1 -1.6337 -4.2530 0.0124 41 1 -1.2263 -7.5735 1.6441 42 1 -0.4341 -6.0697 2.1732 43 1 -2.1425 -6.0479 1.6737 44 1 0.9317 -6.6409 -1.2423 45 1 1.3611 -6.4159 0.4704 46 1 0.5694 -7.9197 -0.0582 47 1 -1.4654 -6.6103 -1.9439 48 1 -2.7448 -6.3637 -0.7312 49 1 -3.3980 -10.8953 -1.8021 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000699838547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:43 Heat of formation + Delta-G solvation = -5.275009 kcal Electronic energy + Delta-G solvation = -21411.358091 eV Core-core repulsion = 18566.091859 eV Total energy + Delta-G solvation = -2845.266232 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74356 -39.03351 -35.76626 -34.67678 -33.85969 -29.87253 -28.68329 -28.31372 -27.91454 -27.48844 -25.54339 -23.72949 -23.43207 -21.53527 -19.52457 -19.03843 -18.86129 -17.14109 -16.55762 -16.21664 -16.03599 -15.71131 -15.20285 -15.04951 -14.85935 -14.35114 -14.31723 -13.86356 -13.76227 -13.59272 -13.34155 -13.08906 -12.98770 -12.79399 -12.74337 -12.46609 -12.30653 -12.19783 -12.15608 -12.04498 -11.77245 -11.71285 -11.43403 -11.37443 -11.32949 -11.02320 -10.87389 -10.69938 -10.67325 -10.50120 -9.12364 -8.21482 -6.21717 1.35475 1.37666 1.48775 2.39792 2.88948 3.13508 3.31649 3.69598 3.95328 3.98754 4.08930 4.15746 4.23156 4.29525 4.32001 4.34797 4.54904 4.61503 4.70530 4.73379 4.77507 4.82124 4.87246 4.89966 4.91605 4.94505 5.00939 5.04752 5.09051 5.11424 5.15700 5.19549 5.21635 5.27774 5.37517 5.39064 5.45067 5.48590 5.53752 5.56386 5.58522 5.63399 5.76697 5.82675 6.20879 6.42970 6.58857 6.85662 7.40745 8.94845 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.030492 B = 0.003673 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.052556 B = 7621.171009 C = 8043.127375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.036 4.036 3 C -0.135 4.135 4 C -0.150 4.150 5 C -0.133 4.133 6 H 0.107 0.893 7 C -0.177 4.177 8 C -0.147 4.147 9 H 0.102 0.898 10 C 0.077 3.923 11 N -0.688 5.688 12 C 0.081 3.919 13 C -0.049 4.049 14 C -0.108 4.108 15 C -0.124 4.124 16 C -0.003 4.003 17 C -0.503 4.503 18 H 0.044 0.956 19 C 0.000 4.000 20 N -0.955 5.955 21 Si 0.941 3.059 22 H -0.270 1.270 23 H -0.250 1.250 24 H -0.288 1.288 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.342 0.658 39 H 0.026 0.974 40 H 0.062 0.938 41 H 0.027 0.973 42 H 0.066 0.934 43 H 0.036 0.964 44 H 0.044 0.956 45 H 0.066 0.934 46 H 0.035 0.965 47 H 0.011 0.989 48 H 0.012 0.988 49 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.199 24.838 3.011 27.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.036 4.036 3 C -0.192 4.192 4 C -0.206 4.206 5 C -0.152 4.152 6 H 0.125 0.875 7 C -0.214 4.214 8 C -0.165 4.165 9 H 0.120 0.880 10 C -0.051 4.051 11 N -0.320 5.320 12 C -0.048 4.048 13 C -0.050 4.050 14 C -0.165 4.165 15 C -0.181 4.181 16 C -0.041 4.041 17 C -0.541 4.541 18 H 0.062 0.938 19 C -0.195 4.195 20 N -0.597 5.597 21 Si 0.765 3.235 22 H -0.195 1.195 23 H -0.174 1.174 24 H -0.214 1.214 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.120 0.880 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.161 0.839 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.046 0.954 42 H 0.084 0.916 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.085 0.915 46 H 0.054 0.946 47 H 0.030 0.970 48 H 0.030 0.970 49 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 9.671 24.758 3.475 26.806 hybrid contribution -0.246 -0.526 -1.377 1.495 sum 9.426 24.232 2.097 26.085 Atomic orbital electron populations 1.22592 0.95102 1.02776 1.02349 1.20005 0.95121 0.95314 0.93184 1.21822 1.01013 0.94590 1.01821 1.22072 1.01210 1.00525 0.96837 1.22491 0.98536 0.97683 0.96442 0.87516 1.23337 1.00524 1.01733 0.95771 1.22211 1.01314 0.91148 1.01869 0.87966 1.22149 0.98253 0.87293 0.97357 1.60509 1.12518 1.04062 1.54946 1.21832 0.96091 0.93701 0.93209 1.20359 0.95519 0.93225 0.95853 1.21500 0.99989 0.99450 0.95574 1.21689 0.95900 1.00229 1.00280 1.19597 0.95075 0.94379 0.95016 1.21437 1.21371 0.92449 1.18881 0.93763 1.25928 0.98697 0.95186 0.99716 1.70066 1.39827 1.06840 1.42991 0.85795 0.78319 0.79641 0.79703 1.19519 1.17351 1.21432 0.91615 0.92565 0.91595 0.92348 0.92457 0.92493 0.92402 0.92646 0.92246 0.88005 0.88622 0.93190 0.90936 0.83866 0.95598 0.91943 0.95377 0.91550 0.94495 0.93698 0.91549 0.94556 0.97040 0.96969 0.92894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.69 7.19 71.99 0.52 -2.17 16 2 C -0.04 -0.53 0.76 -52.18 -0.04 -0.57 16 3 C -0.14 -1.70 8.37 71.98 0.60 -1.10 16 4 C -0.15 -2.33 8.21 71.98 0.59 -1.74 16 5 C -0.13 -2.06 5.03 -10.79 -0.05 -2.11 16 6 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 7 C -0.18 -2.89 9.40 30.59 0.29 -2.61 16 8 C -0.15 -2.71 5.80 -10.79 -0.06 -2.77 16 9 H 0.10 1.97 8.11 -2.39 -0.02 1.95 16 10 C 0.08 1.64 3.80 86.30 0.33 1.97 16 11 N -0.69 -17.69 5.70 -513.90 -2.93 -20.62 16 12 C 0.08 2.50 4.65 86.30 0.40 2.90 16 13 C -0.05 -1.87 0.60 -52.18 -0.03 -1.90 16 14 C -0.11 -4.16 8.07 71.98 0.58 -3.58 16 15 C -0.12 -4.48 7.89 71.98 0.57 -3.91 16 16 C 0.00 -0.13 3.11 29.85 0.09 -0.04 16 17 C -0.50 -28.56 8.20 25.60 0.21 -28.35 16 18 H 0.04 2.75 5.92 -2.91 -0.02 2.73 16 19 C 0.00 0.02 5.47 84.66 0.46 0.48 16 20 N -0.96 -60.57 13.96 21.45 0.30 -60.27 16 21 Si 0.94 45.04 27.47 68.60 1.88 46.93 16 22 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.25 -11.18 6.54 99.48 0.65 -10.53 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 25 H 0.07 1.00 5.54 -2.39 -0.01 0.98 16 26 H 0.06 0.82 8.06 -2.39 -0.02 0.81 16 27 H 0.07 1.17 4.10 -2.39 -0.01 1.16 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 1.02 5.07 -2.38 -0.01 1.01 16 32 H 0.05 0.84 8.06 -2.39 -0.02 0.82 16 33 H 0.06 0.84 8.06 -2.39 -0.02 0.83 16 34 H 0.10 1.67 5.48 -2.39 -0.01 1.65 16 35 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.05 1.04 4.02 -2.39 -0.01 1.03 16 37 H 0.07 1.61 6.15 -2.39 -0.01 1.60 16 38 H 0.34 8.37 6.76 -89.69 -0.61 7.76 16 39 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.03 1.23 6.62 -2.38 -0.02 1.21 16 42 H 0.07 2.25 7.60 -2.39 -0.02 2.24 16 43 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.07 1.97 6.57 -2.39 -0.02 1.96 16 46 H 0.04 1.54 6.62 -2.38 -0.02 1.52 16 47 H 0.01 0.52 7.57 -2.39 -0.02 0.50 16 48 H 0.01 0.57 7.20 -2.39 -0.02 0.55 16 49 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -62.91 353.52 3.95 -58.96 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.25 Total: 20.51 kcal Atomic # 6 Polarization: -49.96 SS G_CDS: 4.45 Total: -45.51 kcal Atomic # 7 Polarization: -78.26 SS G_CDS: -2.63 Total: -80.89 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 1.88 Total: 46.93 kcal Total: -62.91 3.95 -58.96 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000699838547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.683 kcal (2) G-P(sol) polarization free energy of solvation -62.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds