Wall clock time and date at job start Mon Mar 30 2020 07:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46754 * 2 1 4 4 C 1.53005 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.04147 * 56.01307 * 4 3 2 6 6 C 1.54503 * 109.00205 * 297.05392 * 4 3 2 7 7 C 1.50465 * 108.85519 * 162.30012 * 6 4 3 8 8 C 1.54290 * 113.03115 * 92.15300 * 7 6 4 9 9 C 1.54066 * 112.28985 * 318.30304 * 8 7 6 10 10 N 1.44272 * 111.98394 * 318.91888 * 9 8 7 11 11 C 1.46897 * 110.99763 * 219.31128 * 10 9 8 12 12 C 1.52999 * 109.47353 * 303.29519 * 11 10 9 13 13 C 1.52995 * 109.47482 * 182.22128 * 12 11 10 14 14 C 1.53006 * 109.47207 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46996 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00147 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99558 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00184 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99869 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46927 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47183 * 239.99865 * 19 17 15 22 22 H 1.48503 * 109.47170 * 119.99338 * 19 17 15 23 23 C 1.45856 * 109.05578 * 175.00036 * 4 3 2 24 24 H 1.08992 * 109.47278 * 59.99546 * 1 2 3 25 25 H 1.09002 * 109.46804 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47184 * 299.99581 * 1 2 3 27 27 H 1.08995 * 109.46389 * 240.00202 * 2 1 3 28 28 H 1.08997 * 109.46946 * 120.00148 * 2 1 3 29 29 H 1.09001 * 109.46837 * 60.00806 * 3 2 1 30 30 H 1.08997 * 109.47515 * 299.99800 * 3 2 1 31 31 H 1.09000 * 109.57183 * 282.11235 * 6 4 3 32 32 H 1.09004 * 109.57494 * 42.36390 * 6 4 3 33 33 H 1.09001 * 108.76789 * 213.07198 * 7 6 4 34 34 H 1.09001 * 108.76510 * 331.23700 * 7 6 4 35 35 H 1.08997 * 108.91590 * 79.02761 * 8 7 6 36 36 H 1.09000 * 108.91744 * 197.58165 * 8 7 6 37 37 H 1.08998 * 108.97979 * 198.27257 * 9 8 7 38 38 H 1.09000 * 108.97763 * 79.56353 * 9 8 7 39 39 H 1.09001 * 109.47040 * 183.29829 * 11 10 9 40 40 H 1.09001 * 109.47473 * 63.29680 * 11 10 9 41 41 H 1.09006 * 109.46794 * 62.22063 * 12 11 10 42 42 H 1.08997 * 109.47180 * 302.22577 * 12 11 10 43 43 H 1.09000 * 109.47013 * 60.00567 * 13 12 11 44 44 H 1.08997 * 109.47279 * 300.00388 * 13 12 11 45 45 H 1.09000 * 109.46691 * 60.00346 * 14 13 12 46 46 H 1.08997 * 109.47299 * 300.00352 * 14 13 12 47 47 H 0.96994 * 119.99767 * 0.02562 * 18 17 15 48 48 H 1.09004 * 108.79482 * 60.91386 * 23 4 3 49 49 H 1.09002 * 108.79552 * 302.68644 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9260 0.8664 -0.8535 6 6 4.0725 0.7783 1.3019 7 6 5.5135 0.3845 1.1218 8 6 6.5002 1.4749 1.5889 9 6 6.0500 2.8879 1.1715 10 7 5.5203 2.9116 -0.1702 11 6 5.9450 4.1241 -0.8825 12 6 5.5107 5.3593 -0.0908 13 6 5.9041 6.6222 -0.8596 14 6 5.4703 7.8573 -0.0675 15 6 5.8572 9.1013 -0.8251 16 1 6.3624 9.0191 -1.7762 17 6 5.5673 10.3442 -0.3035 18 7 4.9526 10.4441 0.8549 19 14 6.0475 11.8862 -1.2422 20 1 6.7231 11.5046 -2.5084 21 1 6.9722 12.7017 -0.4146 22 1 4.8294 12.6780 -1.5497 23 6 4.0463 2.8159 -0.1195 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9564 -0.8900 31 1 3.9873 1.4838 2.1285 32 1 3.4738 -0.1074 1.5146 33 1 5.7019 -0.5261 1.6906 34 1 5.6916 0.1792 0.0662 35 1 6.5812 1.4362 2.6752 36 1 7.4800 1.2738 1.1558 37 1 6.9040 3.5630 1.2274 38 1 5.2811 3.2335 1.8624 39 1 5.4845 4.1454 -1.8703 40 1 7.0299 4.1228 -0.9874 41 1 6.0021 5.3583 0.8822 42 1 4.4298 5.3403 0.0480 43 1 5.4127 6.6231 -1.8326 44 1 6.9850 6.6412 -0.9985 45 1 5.9621 7.8562 0.9052 46 1 4.3894 7.8386 0.0717 47 1 4.7036 9.6434 1.3424 48 1 3.6864 3.3885 0.7354 49 1 3.6346 3.2520 -1.0297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703653579.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:01 Heat of formation + Delta-G solvation = -49.454466 kcal Electronic energy + Delta-G solvation = -21062.205841 eV Core-core repulsion = 18215.023844 eV Total energy + Delta-G solvation = -2847.181997 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.86354 -36.65837 -34.86528 -33.78430 -32.22083 -31.84704 -28.55019 -27.26880 -25.77558 -24.71707 -23.45996 -22.05515 -21.19863 -20.61407 -20.01293 -19.11877 -16.66127 -16.02029 -15.96099 -15.32584 -14.81568 -14.59536 -14.20524 -13.97162 -13.71026 -13.51313 -13.25795 -13.06937 -12.66493 -12.52685 -12.27941 -12.21275 -11.90936 -11.59395 -11.42328 -11.21953 -10.98382 -10.94428 -10.77933 -10.73532 -10.59394 -10.52833 -10.37705 -10.32659 -10.11679 -10.09449 -9.77540 -9.75776 -8.57736 -8.29833 -8.07506 -6.33966 -4.02488 3.44465 3.48807 3.62197 3.92043 4.53568 4.56139 4.73511 4.74802 4.88164 4.94960 5.00315 5.17904 5.21562 5.24761 5.32591 5.35880 5.43420 5.45408 5.52841 5.59684 5.62343 5.69107 5.70556 5.77104 5.80458 5.82814 5.90537 5.95707 6.00452 6.03363 6.06030 6.13385 6.19727 6.24919 6.29416 6.32610 6.39207 6.41759 6.63417 6.78527 7.00098 7.19153 7.27578 7.44784 7.58002 8.26178 8.50222 8.91770 9.70205 11.06712 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.003286 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.695585 B = 8519.525411 C = 9282.852913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.117 4.117 4 C -0.081 4.081 5 H 0.074 0.926 6 C -0.113 4.113 7 C -0.108 4.108 8 C -0.109 4.109 9 C 0.052 3.948 10 N -0.528 5.528 11 C 0.056 3.944 12 C -0.154 4.154 13 C -0.100 4.100 14 C 0.008 3.992 15 C -0.601 4.601 16 H 0.049 0.951 17 C 0.012 3.988 18 N -0.916 5.916 19 Si 1.074 2.926 20 H -0.289 1.289 21 H -0.287 1.287 22 H -0.287 1.287 23 C 0.058 3.942 24 H 0.053 0.947 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.059 0.941 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.048 0.952 45 H 0.004 0.996 46 H 0.004 0.996 47 H 0.268 0.732 48 H 0.037 0.963 49 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.394 -23.127 -0.088 23.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.155 4.155 4 C -0.100 4.100 5 H 0.093 0.907 6 C -0.151 4.151 7 C -0.145 4.145 8 C -0.147 4.147 9 C -0.077 4.077 10 N -0.250 5.250 11 C -0.072 4.072 12 C -0.193 4.193 13 C -0.138 4.138 14 C -0.029 4.029 15 C -0.639 4.639 16 H 0.067 0.933 17 C -0.191 4.191 18 N -0.553 5.553 19 Si 0.903 3.097 20 H -0.215 1.215 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.070 4.070 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.022 0.978 46 H 0.022 0.978 47 H 0.079 0.921 48 H 0.055 0.945 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.232 -21.894 -0.312 22.134 hybrid contribution -0.265 -0.853 0.445 0.998 sum -3.497 -22.747 0.133 23.015 Atomic orbital electron populations 1.21791 0.96151 1.01345 1.01825 1.21585 0.95487 0.97018 1.02036 1.21686 0.94943 0.96794 1.02111 1.20190 0.94371 0.96837 0.98571 0.90739 1.21478 0.96093 1.00239 0.97248 1.21160 0.94350 0.97201 1.01834 1.21942 0.98876 0.94447 0.99453 1.21905 0.99580 0.96662 0.89509 1.61780 1.08719 1.38050 1.16418 1.22406 1.00714 0.86791 0.97280 1.22342 1.00894 0.96265 0.99816 1.21418 0.99935 0.93838 0.98593 1.19226 0.95512 0.92877 0.95309 1.22148 1.41893 0.92339 1.07528 0.93306 1.25875 0.94634 1.01740 0.96873 1.70721 1.37863 1.32999 1.13691 0.83482 0.76390 0.74930 0.74942 1.21524 1.21348 1.21344 1.21024 0.88023 0.96637 1.01299 0.92802 0.92993 0.92824 0.92131 0.91734 0.92067 0.91956 0.92353 0.91805 0.93344 0.91631 0.92599 0.92246 0.91690 0.94225 0.90940 0.90855 0.92564 0.92671 0.93321 0.93296 0.97786 0.97796 0.92128 0.94468 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.16 0.37 -0.77 16 2 C -0.12 -0.98 5.69 -26.73 -0.15 -1.13 16 3 C -0.12 -1.07 4.62 -26.73 -0.12 -1.19 16 4 C -0.08 -0.81 1.95 -93.21 -0.18 -1.00 16 5 H 0.07 0.79 7.59 -51.93 -0.39 0.39 16 6 C -0.11 -1.08 4.89 -27.21 -0.13 -1.21 16 7 C -0.11 -1.05 5.42 -27.32 -0.15 -1.20 16 8 C -0.11 -1.14 6.14 -25.50 -0.16 -1.30 16 9 C 0.05 0.65 4.04 -4.67 -0.02 0.63 16 10 N -0.53 -6.81 4.45 -239.56 -1.07 -7.88 16 11 C 0.06 0.80 5.05 -3.83 -0.02 0.78 16 12 C -0.15 -2.64 4.66 -26.73 -0.12 -2.77 16 13 C -0.10 -2.10 5.15 -26.73 -0.14 -2.24 16 14 C 0.01 0.21 4.28 -27.88 -0.12 0.09 16 15 C -0.60 -17.70 9.11 -34.44 -0.31 -18.01 16 16 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 17 C 0.01 0.36 5.46 -17.82 -0.10 0.26 16 18 N -0.92 -28.85 13.65 55.43 0.76 -28.09 16 19 Si 1.07 26.00 29.90 -169.99 -5.08 20.91 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 C 0.06 0.70 3.16 -6.71 -0.02 0.68 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.49 6.15 -51.93 -0.32 0.17 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.06 0.61 7.15 -51.93 -0.37 0.23 16 32 H 0.06 0.54 5.85 -51.93 -0.30 0.24 16 33 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.69 7.38 -51.93 -0.38 0.31 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.06 0.85 6.84 -51.93 -0.36 0.50 16 38 H 0.04 0.52 6.51 -51.93 -0.34 0.18 16 39 H 0.07 1.02 7.91 -51.93 -0.41 0.61 16 40 H 0.07 1.04 8.12 -51.93 -0.42 0.62 16 41 H 0.06 0.98 6.77 -51.93 -0.35 0.63 16 42 H 0.05 0.97 7.04 -51.93 -0.37 0.60 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.00 0.11 8.01 -51.93 -0.42 -0.31 16 46 H 0.00 0.10 8.01 -51.93 -0.42 -0.31 16 47 H 0.27 8.43 7.22 -40.82 -0.29 8.14 16 48 H 0.04 0.49 6.84 -51.93 -0.36 0.13 16 49 H 0.07 0.83 7.60 -51.93 -0.39 0.43 16 LS Contribution 361.12 15.07 5.44 5.44 Total: -1.00 -30.58 361.12 -11.07 -41.65 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -9.74 Total: -3.66 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: -1.38 Total: -28.38 kcal Atomic # 7 Polarization: -35.66 SS G_CDS: -0.31 Total: -35.96 kcal Atomic # 14 Polarization: 26.00 SS G_CDS: -5.08 Total: 20.91 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.58 -11.07 -41.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703653579.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.806 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds