Wall clock time and date at job start Mon Mar 30 2020 07:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46754 * 2 1 4 4 C 1.53005 * 109.46754 * 179.97438 * 3 2 1 5 5 H 1.09004 * 109.04147 * 56.01307 * 4 3 2 6 6 C 1.54503 * 109.00205 * 297.05392 * 4 3 2 7 7 C 1.50465 * 108.85519 * 162.30012 * 6 4 3 8 8 C 1.54290 * 113.03115 * 92.15300 * 7 6 4 9 9 C 1.54066 * 112.28985 * 318.30304 * 8 7 6 10 10 N 1.44272 * 111.98394 * 318.91888 * 9 8 7 11 11 C 1.46897 * 110.99763 * 219.31128 * 10 9 8 12 12 C 1.52999 * 109.47353 * 303.29519 * 11 10 9 13 13 C 1.52995 * 109.47482 * 182.22128 * 12 11 10 14 14 C 1.53006 * 109.47207 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.46996 * 180.02562 * 14 13 12 16 16 H 1.08000 * 120.00147 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99558 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00184 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 119.99869 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46927 * 359.97438 * 19 17 15 21 21 H 1.48498 * 109.47183 * 239.99865 * 19 17 15 22 22 H 1.48503 * 109.47170 * 119.99338 * 19 17 15 23 23 C 1.45856 * 109.05578 * 175.00036 * 4 3 2 24 24 H 1.08992 * 109.47278 * 59.99546 * 1 2 3 25 25 H 1.09002 * 109.46804 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47184 * 299.99581 * 1 2 3 27 27 H 1.08995 * 109.46389 * 240.00202 * 2 1 3 28 28 H 1.08997 * 109.46946 * 120.00148 * 2 1 3 29 29 H 1.09001 * 109.46837 * 60.00806 * 3 2 1 30 30 H 1.08997 * 109.47515 * 299.99800 * 3 2 1 31 31 H 1.09000 * 109.57183 * 282.11235 * 6 4 3 32 32 H 1.09004 * 109.57494 * 42.36390 * 6 4 3 33 33 H 1.09001 * 108.76789 * 213.07198 * 7 6 4 34 34 H 1.09001 * 108.76510 * 331.23700 * 7 6 4 35 35 H 1.08997 * 108.91590 * 79.02761 * 8 7 6 36 36 H 1.09000 * 108.91744 * 197.58165 * 8 7 6 37 37 H 1.08998 * 108.97979 * 198.27257 * 9 8 7 38 38 H 1.09000 * 108.97763 * 79.56353 * 9 8 7 39 39 H 1.09001 * 109.47040 * 183.29829 * 11 10 9 40 40 H 1.09001 * 109.47473 * 63.29680 * 11 10 9 41 41 H 1.09006 * 109.46794 * 62.22063 * 12 11 10 42 42 H 1.08997 * 109.47180 * 302.22577 * 12 11 10 43 43 H 1.09000 * 109.47013 * 60.00567 * 13 12 11 44 44 H 1.08997 * 109.47279 * 300.00388 * 13 12 11 45 45 H 1.09000 * 109.46691 * 60.00346 * 14 13 12 46 46 H 1.08997 * 109.47299 * 300.00352 * 14 13 12 47 47 H 0.96994 * 119.99767 * 0.02562 * 18 17 15 48 48 H 1.09004 * 108.79482 * 60.91386 * 23 4 3 49 49 H 1.09002 * 108.79552 * 302.68644 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9260 0.8664 -0.8535 6 6 4.0725 0.7783 1.3019 7 6 5.5135 0.3845 1.1218 8 6 6.5002 1.4749 1.5889 9 6 6.0500 2.8879 1.1715 10 7 5.5203 2.9116 -0.1702 11 6 5.9450 4.1241 -0.8825 12 6 5.5107 5.3593 -0.0908 13 6 5.9041 6.6222 -0.8596 14 6 5.4703 7.8573 -0.0675 15 6 5.8572 9.1013 -0.8251 16 1 6.3624 9.0191 -1.7762 17 6 5.5673 10.3442 -0.3035 18 7 4.9526 10.4441 0.8549 19 14 6.0475 11.8862 -1.2422 20 1 6.7231 11.5046 -2.5084 21 1 6.9722 12.7017 -0.4146 22 1 4.8294 12.6780 -1.5497 23 6 4.0463 2.8159 -0.1195 24 1 -0.3633 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8932 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.6767 1.9563 0.8901 30 1 1.6767 1.9564 -0.8900 31 1 3.9873 1.4838 2.1285 32 1 3.4738 -0.1074 1.5146 33 1 5.7019 -0.5261 1.6906 34 1 5.6916 0.1792 0.0662 35 1 6.5812 1.4362 2.6752 36 1 7.4800 1.2738 1.1558 37 1 6.9040 3.5630 1.2274 38 1 5.2811 3.2335 1.8624 39 1 5.4845 4.1454 -1.8703 40 1 7.0299 4.1228 -0.9874 41 1 6.0021 5.3583 0.8822 42 1 4.4298 5.3403 0.0480 43 1 5.4127 6.6231 -1.8326 44 1 6.9850 6.6412 -0.9985 45 1 5.9621 7.8562 0.9052 46 1 4.3894 7.8386 0.0717 47 1 4.7036 9.6434 1.3424 48 1 3.6864 3.3885 0.7354 49 1 3.6346 3.2520 -1.0297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000703653579.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:00 Heat of formation + Delta-G solvation = -65.022986 kcal Electronic energy + Delta-G solvation = -21062.880943 eV Core-core repulsion = 18215.023844 eV Total energy + Delta-G solvation = -2847.857099 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.83815 -37.74882 -36.36773 -35.14229 -33.68346 -32.90156 -30.08656 -28.26275 -27.00816 -25.89878 -25.00002 -23.31336 -22.35125 -21.96025 -20.92094 -20.15727 -18.89037 -17.01738 -16.97775 -16.31031 -15.83975 -15.77847 -15.69413 -15.28218 -15.05255 -14.70680 -14.54046 -14.11632 -14.02868 -13.74231 -13.47323 -13.30423 -12.98888 -12.72112 -12.68251 -12.45498 -12.35341 -12.18846 -12.04149 -11.95490 -11.78891 -11.65731 -11.63816 -11.48960 -11.43418 -11.23936 -11.19009 -10.87772 -10.72143 -10.59007 -9.26183 -8.73462 -6.44388 1.49446 1.59625 1.76329 2.53508 2.89731 3.11434 3.69873 3.84115 3.91903 4.00436 4.01546 4.11183 4.15090 4.22862 4.33026 4.35568 4.41963 4.46118 4.51103 4.63593 4.65348 4.72527 4.77471 4.80335 4.83901 4.90415 4.93237 4.95745 4.99547 5.00543 5.07253 5.13957 5.16661 5.25743 5.26133 5.32338 5.39625 5.41582 5.43064 5.49003 5.50577 5.56563 5.60630 5.96238 6.10121 6.14731 6.20160 6.53135 7.38693 8.66678 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.022989 B = 0.003286 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.695585 B = 8519.525411 C = 9282.852913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.114 4.114 4 C -0.076 4.076 5 H 0.074 0.926 6 C -0.110 4.110 7 C -0.105 4.105 8 C -0.106 4.106 9 C 0.051 3.949 10 N -0.523 5.523 11 C 0.064 3.936 12 C -0.140 4.140 13 C -0.088 4.088 14 C 0.008 3.992 15 C -0.620 4.620 16 H 0.051 0.949 17 C -0.043 4.043 18 N -0.939 5.939 19 Si 1.125 2.875 20 H -0.268 1.268 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.059 3.941 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.061 0.939 37 H 0.056 0.944 38 H 0.030 0.970 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.051 0.949 44 H 0.052 0.948 45 H -0.017 1.017 46 H -0.017 1.017 47 H 0.254 0.746 48 H 0.023 0.977 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 -24.343 -0.987 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.152 4.152 4 C -0.095 4.095 5 H 0.093 0.907 6 C -0.147 4.147 7 C -0.143 4.143 8 C -0.144 4.144 9 C -0.078 4.078 10 N -0.244 5.244 11 C -0.064 4.064 12 C -0.179 4.179 13 C -0.127 4.127 14 C -0.029 4.029 15 C -0.658 4.658 16 H 0.070 0.930 17 C -0.240 4.240 18 N -0.576 5.576 19 Si 0.945 3.055 20 H -0.193 1.193 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.068 4.068 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.048 0.952 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.066 0.934 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.002 0.998 46 H 0.001 0.999 47 H 0.063 0.937 48 H 0.041 0.959 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.830 -23.147 -1.206 23.351 hybrid contribution -0.410 -0.485 0.762 0.992 sum -3.240 -23.632 -0.444 23.857 Atomic orbital electron populations 1.21794 0.95799 1.01937 1.01624 1.21555 0.95776 0.95936 1.02463 1.21653 0.94207 0.97775 1.01599 1.20131 0.94943 0.95405 0.98989 0.90717 1.21462 0.96366 1.00506 0.96386 1.21144 0.94040 0.97441 1.01653 1.21924 0.99165 0.93255 1.00079 1.21957 0.98872 0.98024 0.88985 1.61895 1.09219 1.36628 1.16665 1.22307 1.01114 0.85818 0.97116 1.22192 1.00316 0.95925 0.99488 1.21258 0.99996 0.93147 0.98258 1.19198 0.93921 0.94893 0.94926 1.22589 1.41707 0.93651 1.07839 0.93037 1.27563 0.93724 1.05791 0.96892 1.70867 1.39613 1.32265 1.14903 0.82856 0.76833 0.71256 0.74546 1.19274 1.20247 1.20241 1.21079 0.87462 0.97876 1.00385 0.93039 0.92012 0.93037 0.91773 0.91163 0.92687 0.92409 0.93334 0.90279 0.91773 0.92235 0.91666 0.91975 0.92568 0.95215 0.90338 0.90216 0.93138 0.93415 0.93005 0.92937 0.99848 0.99898 0.93688 0.95889 0.92122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.12 -1.69 5.69 30.60 0.17 -1.51 16 3 C -0.11 -1.97 4.62 30.60 0.14 -1.83 16 4 C -0.08 -1.45 1.95 -12.47 -0.02 -1.47 16 5 H 0.07 1.46 7.59 -2.38 -0.02 1.44 16 6 C -0.11 -1.92 4.89 30.29 0.15 -1.77 16 7 C -0.11 -1.83 5.42 30.21 0.16 -1.67 16 8 C -0.11 -2.07 6.14 31.39 0.19 -1.87 16 9 C 0.05 1.23 4.04 87.15 0.35 1.58 16 10 N -0.52 -13.06 4.45 -911.84 -4.06 -17.12 16 11 C 0.06 1.79 5.05 86.30 0.44 2.23 16 12 C -0.14 -4.83 4.66 30.59 0.14 -4.69 16 13 C -0.09 -3.74 5.15 30.59 0.16 -3.59 16 14 C 0.01 0.42 4.28 29.85 0.13 0.55 16 15 C -0.62 -36.86 9.11 25.60 0.23 -36.63 16 16 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 17 C -0.04 -2.57 5.46 84.65 0.46 -2.11 16 18 N -0.94 -60.16 13.65 21.45 0.29 -59.87 16 19 Si 1.12 51.56 29.90 68.60 2.05 53.61 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 C 0.06 1.42 3.16 83.94 0.27 1.68 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.07 0.91 6.15 -2.39 -0.01 0.90 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.06 1.05 8.09 -2.39 -0.02 1.03 16 31 H 0.05 0.96 7.15 -2.39 -0.02 0.94 16 32 H 0.08 1.15 5.85 -2.39 -0.01 1.14 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.13 7.38 -2.39 -0.02 1.11 16 35 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.06 1.46 6.84 -2.39 -0.02 1.44 16 38 H 0.03 0.78 6.51 -2.39 -0.02 0.76 16 39 H 0.08 2.11 7.91 -2.39 -0.02 2.09 16 40 H 0.08 2.14 8.12 -2.39 -0.02 2.12 16 41 H 0.05 1.79 6.77 -2.38 -0.02 1.77 16 42 H 0.05 1.71 7.04 -2.39 -0.02 1.69 16 43 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 44 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 45 H -0.02 -0.98 8.01 -2.39 -0.02 -0.99 16 46 H -0.02 -1.01 8.01 -2.39 -0.02 -1.02 16 47 H 0.25 16.53 7.22 -92.71 -0.67 15.86 16 48 H 0.02 0.61 6.84 -2.39 -0.02 0.60 16 49 H 0.06 1.50 7.60 -2.39 -0.02 1.48 16 Total: -1.00 -65.59 361.12 2.93 -62.66 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.96 Total: 13.18 kcal Atomic # 6 Polarization: -56.14 SS G_CDS: 3.69 Total: -52.45 kcal Atomic # 7 Polarization: -73.23 SS G_CDS: -3.77 Total: -77.00 kcal Atomic # 14 Polarization: 51.56 SS G_CDS: 2.05 Total: 53.61 kcal Total: -65.59 2.93 -62.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703653579.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.366 kcal (2) G-P(sol) polarization free energy of solvation -65.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds