Wall clock time and date at job start Mon Mar 30 2020 07:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47291 * 2 1 4 4 C 1.53000 * 109.47021 * 120.00250 * 2 1 3 5 5 H 1.08998 * 108.81498 * 294.58310 * 4 2 1 6 6 C 1.45877 * 108.84407 * 52.96405 * 4 2 1 7 7 C 1.54525 * 111.67222 * 182.32213 * 6 4 2 8 8 C 1.50544 * 108.85754 * 282.75018 * 7 6 4 9 9 C 1.53917 * 112.93702 * 91.75599 * 8 7 6 10 10 N 1.47982 * 113.35810 * 317.73229 * 9 8 7 11 11 C 1.46900 * 111.06190 * 192.20705 * 10 9 8 12 12 C 1.52999 * 109.47199 * 297.44155 * 11 10 9 13 13 C 1.53006 * 109.46868 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46868 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47147 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00167 * 359.97438 * 15 14 13 17 17 C 1.37882 * 120.00163 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00025 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99840 * 0.02562 * 17 15 14 20 20 H 1.48501 * 109.47243 * 89.99599 * 19 17 15 21 21 H 1.48499 * 109.47118 * 209.99910 * 19 17 15 22 22 H 1.48498 * 109.47146 * 329.99896 * 19 17 15 23 23 C 1.44307 * 113.63198 * 318.20145 * 10 9 8 24 24 H 1.09000 * 109.46733 * 300.00284 * 1 2 3 25 25 H 1.09007 * 109.46855 * 59.99592 * 1 2 3 26 26 H 1.08994 * 109.47055 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47416 * 239.99977 * 2 1 3 28 28 H 1.09000 * 109.46649 * 186.62309 * 3 2 1 29 29 H 1.08998 * 109.46975 * 306.62132 * 3 2 1 30 30 H 1.08994 * 109.46827 * 66.62205 * 3 2 1 31 31 H 1.08994 * 109.03943 * 302.88164 * 6 4 2 32 32 H 1.08992 * 109.04090 * 61.83139 * 6 4 2 33 33 H 1.08996 * 109.57524 * 42.56377 * 7 6 4 34 34 H 1.08998 * 109.57249 * 162.81548 * 7 6 4 35 35 H 1.08999 * 108.78823 * 212.65022 * 8 7 6 36 36 H 1.09005 * 108.79045 * 330.86516 * 8 7 6 37 37 H 1.08999 * 108.70942 * 78.74738 * 9 8 7 38 38 H 1.08998 * 108.71347 * 196.88799 * 9 8 7 39 39 H 1.09002 * 109.47066 * 57.43964 * 11 10 9 40 40 H 1.09004 * 109.47113 * 177.43775 * 11 10 9 41 41 H 1.08998 * 109.47427 * 299.99782 * 12 11 10 42 42 H 1.08997 * 109.47237 * 60.00176 * 12 11 10 43 43 H 1.08993 * 109.46965 * 299.99883 * 13 12 11 44 44 H 1.08997 * 109.46737 * 60.00250 * 13 12 11 45 45 H 1.09010 * 109.47083 * 299.99931 * 14 13 12 46 46 H 1.09000 * 109.47081 * 59.99797 * 14 13 12 47 47 H 0.96999 * 119.99758 * 179.97438 * 18 17 15 48 48 H 1.09002 * 109.68911 * 335.61867 * 23 10 9 49 49 H 1.08998 * 109.69144 * 215.06815 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7525 -0.1461 2.1293 6 6 1.4130 -2.0364 1.3229 7 6 1.8398 -2.8016 2.5958 8 6 3.2271 -3.3495 2.3920 9 6 4.3281 -2.3927 2.8832 10 7 4.0780 -0.9783 2.5273 11 6 5.2741 -0.1568 2.7563 12 6 5.6294 -0.1769 4.2443 13 6 6.8756 0.6783 4.4826 14 6 7.2312 0.6577 5.9706 15 6 8.4583 1.5004 6.2054 16 1 8.9369 2.0003 5.3763 17 6 8.9700 1.6333 7.4788 18 7 10.0411 2.3684 7.6837 19 14 8.1427 0.7682 8.9128 20 1 8.7345 -0.5830 9.0839 21 1 8.3475 1.5590 10.1529 22 1 6.6882 0.6407 8.6416 23 6 3.5766 -0.7993 1.1861 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 3.1236 1.4447 -0.1185 29 1 1.5832 1.9894 -0.8248 30 1 1.7767 1.9209 0.9433 31 1 0.3300 -1.9142 1.3279 32 1 1.7012 -2.6173 0.4468 33 1 1.8371 -2.1224 3.4483 34 1 1.1449 -3.6210 2.7795 35 1 3.3148 -4.2925 2.9316 36 1 3.3765 -3.5406 1.3292 37 1 4.4024 -2.4726 3.9677 38 1 5.2781 -2.6983 2.4449 39 1 6.1066 -0.5583 2.1785 40 1 5.0760 0.8685 2.4437 41 1 4.7969 0.2246 4.8221 42 1 5.8275 -1.2021 4.5568 43 1 7.7079 0.2764 3.9049 44 1 6.6778 1.7036 4.1700 45 1 6.3989 1.0594 6.5487 46 1 7.4290 -0.3677 6.2827 47 1 10.4009 2.4621 8.5796 48 1 3.8763 -1.6442 0.5661 49 1 3.9742 0.1244 0.7656 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000703686218.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:03 Heat of formation + Delta-G solvation = -37.669429 kcal Electronic energy + Delta-G solvation = -21200.386088 eV Core-core repulsion = 18353.715129 eV Total energy + Delta-G solvation = -2846.670960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 267.226 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88779 -36.81173 -34.94594 -33.76174 -32.07301 -30.82450 -29.24730 -27.69404 -26.14938 -24.99597 -23.93109 -21.59151 -21.15177 -20.01027 -19.75386 -19.54698 -16.62555 -16.29567 -15.63728 -15.42796 -14.67066 -14.53387 -14.19911 -14.05637 -13.94849 -13.59136 -13.13021 -12.81709 -12.63307 -12.59463 -12.30771 -12.12194 -11.82070 -11.79722 -11.58534 -11.43076 -11.20083 -11.00142 -10.93271 -10.77643 -10.63462 -10.53202 -10.37923 -10.26126 -10.19045 -9.80706 -9.62360 -9.40716 -9.10478 -8.49187 -8.08440 -5.99991 -3.97291 3.34155 3.41258 3.46378 3.88875 4.47477 4.49718 4.67131 4.68715 4.80426 4.89985 4.98820 5.13970 5.22561 5.31357 5.34140 5.37471 5.45033 5.47576 5.49965 5.57581 5.64769 5.66401 5.69774 5.72860 5.77635 5.85984 5.89037 5.92663 6.01160 6.05750 6.07657 6.12555 6.15356 6.21592 6.29251 6.31601 6.43086 6.47999 6.72237 6.83143 6.98265 7.23072 7.37027 7.39928 7.52408 7.85766 8.59742 9.05566 9.63243 11.13722 Molecular weight = 267.23amu Principal moments of inertia in cm(-1) A = 0.026549 B = 0.003414 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.406482 B = 8198.688013 C = 8726.582440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 C -0.148 4.148 4 C -0.077 4.077 5 H 0.079 0.921 6 C -0.113 4.113 7 C -0.112 4.112 8 C -0.118 4.118 9 C 0.061 3.939 10 N -0.548 5.548 11 C 0.062 3.938 12 C -0.117 4.117 13 C -0.102 4.102 14 C -0.013 4.013 15 C -0.519 4.519 16 H 0.070 0.930 17 C 0.064 3.936 18 N -0.906 5.906 19 Si 0.881 3.119 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.265 1.265 23 C 0.066 3.934 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.029 0.971 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.015 0.985 46 H 0.009 0.991 47 H 0.262 0.738 48 H 0.037 0.963 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.724 -9.556 -16.002 27.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.096 4.096 5 H 0.097 0.903 6 C -0.150 4.150 7 C -0.150 4.150 8 C -0.156 4.156 9 C -0.066 4.066 10 N -0.273 5.273 11 C -0.065 4.065 12 C -0.155 4.155 13 C -0.140 4.140 14 C -0.051 4.051 15 C -0.557 4.557 16 H 0.088 0.912 17 C -0.137 4.137 18 N -0.546 5.546 19 Si 0.708 3.292 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.189 1.189 23 C -0.062 4.062 24 H 0.074 0.926 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.047 0.953 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.033 0.967 46 H 0.027 0.973 47 H 0.072 0.928 48 H 0.055 0.945 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.946 -9.346 -15.574 26.977 hybrid contribution 0.434 -0.700 0.289 0.873 sum -19.512 -10.046 -15.285 26.745 Atomic orbital electron populations 1.21935 0.95498 1.01668 1.01555 1.21200 0.95548 0.96309 0.98277 1.21898 1.01010 0.95895 1.01754 1.20146 0.94819 0.96619 0.98038 0.90290 1.20724 1.00347 0.96336 0.97601 1.21288 0.95408 0.99512 0.98786 1.21387 0.95162 0.98130 1.00945 1.22412 0.96149 0.86810 1.01233 1.60658 1.32836 1.08509 1.25251 1.22261 0.89545 0.96866 0.97812 1.21707 0.99088 1.00540 0.94141 1.21424 0.94957 0.98383 0.99214 1.19561 0.96903 0.96403 0.92198 1.21201 1.10193 1.29455 0.94853 0.91157 1.25053 0.94715 0.94999 0.98896 1.69924 1.22558 1.40177 1.21921 0.86759 0.80757 0.79708 0.81969 1.20379 1.21450 1.18939 1.21884 0.94735 1.00522 0.89105 0.92632 0.93105 0.92372 0.91748 0.92548 0.93103 0.92419 0.91839 0.92951 0.90713 0.92640 0.91813 0.92702 0.90695 0.95197 0.95318 0.90954 0.91746 0.92707 0.93189 0.92889 0.96675 0.97280 0.92825 0.94517 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.57 37.16 0.32 -0.78 16 2 C -0.09 -0.77 2.48 -90.62 -0.22 -1.00 16 3 C -0.15 -1.25 8.82 37.16 0.33 -0.93 16 4 C -0.08 -0.72 1.46 -93.48 -0.14 -0.86 16 5 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 6 C -0.11 -0.97 4.17 -29.30 -0.12 -1.10 16 7 C -0.11 -1.04 5.63 -27.16 -0.15 -1.20 16 8 C -0.12 -1.14 5.28 -27.48 -0.14 -1.29 16 9 C 0.06 0.72 4.79 -2.75 -0.01 0.70 16 10 N -0.55 -6.78 4.02 -234.60 -0.94 -7.72 16 11 C 0.06 0.87 4.80 -3.82 -0.02 0.85 16 12 C -0.12 -1.92 5.06 -26.73 -0.14 -2.06 16 13 C -0.10 -2.05 5.15 -26.73 -0.14 -2.19 16 14 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 15 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 16 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 17 C 0.06 1.91 5.47 -17.82 -0.10 1.82 16 18 N -0.91 -28.58 13.96 55.43 0.77 -27.80 16 19 Si 0.88 22.27 27.47 -169.99 -4.67 17.60 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 22 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 23 C 0.07 0.70 4.72 -4.70 -0.02 0.68 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.06 0.40 6.24 -51.93 -0.32 0.08 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.49 6.42 -51.93 -0.33 0.16 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 31 H 0.06 0.51 5.90 -51.93 -0.31 0.20 16 32 H 0.05 0.44 7.58 -51.93 -0.39 0.05 16 33 H 0.07 0.81 7.78 -51.93 -0.40 0.41 16 34 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.05 0.52 6.66 -51.93 -0.35 0.17 16 37 H 0.07 0.94 6.97 -51.93 -0.36 0.58 16 38 H 0.03 0.36 7.95 -51.93 -0.41 -0.05 16 39 H 0.03 0.40 8.05 -51.93 -0.42 -0.01 16 40 H 0.07 0.99 7.79 -51.93 -0.40 0.59 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.05 0.89 6.72 -51.93 -0.35 0.54 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.01 0.37 7.20 -51.92 -0.37 0.00 16 46 H 0.01 0.22 7.57 -51.93 -0.39 -0.18 16 47 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 48 H 0.04 0.39 6.79 -51.93 -0.35 0.04 16 49 H 0.07 0.75 5.18 -51.93 -0.27 0.48 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -30.29 356.87 -10.14 -40.43 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -9.67 Total: -4.55 kcal Atomic # 6 Polarization: -22.33 SS G_CDS: -1.00 Total: -23.33 kcal Atomic # 7 Polarization: -35.35 SS G_CDS: -0.17 Total: -35.52 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -4.67 Total: 17.60 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.29 -10.14 -40.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000703686218.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.758 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds